Wall clock time and date at job start Mon Mar 30 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.17232 * 272.37577 * 12 11 10 14 14 C 1.35760 * 117.00097 * 243.84407 * 13 12 11 15 15 C 1.38364 * 119.32582 * 180.02562 * 14 13 12 16 16 C 1.39147 * 118.83952 * 179.97438 * 15 14 13 17 17 N 1.37125 * 134.57052 * 180.02562 * 16 15 14 18 18 H 0.96998 * 125.05188 * 359.93299 * 17 16 15 19 19 C 1.37105 * 109.89260 * 179.97438 * 17 16 15 20 20 C 1.34198 * 109.96189 * 359.97438 * 19 17 16 21 21 C 1.41144 * 118.18737 * 359.97438 * 16 15 14 22 22 C 1.39186 * 119.23284 * 0.02562 * 21 16 15 23 23 N 1.31783 * 120.22349 * 359.70278 * 22 21 16 24 24 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 27 27 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 28 28 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 29 29 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 30 30 H 1.08999 * 114.34242 * 139.68978 * 12 11 10 31 31 H 1.08003 * 120.57912 * 359.95522 * 15 14 13 32 32 H 1.08003 * 125.01726 * 179.97438 * 19 17 16 33 33 H 1.08004 * 126.51173 * 179.97438 * 20 19 17 34 34 H 1.07994 * 119.88442 * 180.02562 * 22 21 16 35 35 H 1.08997 * 113.47356 * 253.46676 * 24 10 9 36 36 H 1.08997 * 113.47044 * 23.93734 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3426 -5.0420 0.3465 14 6 5.9807 -6.0450 1.0021 15 6 5.8220 -7.3484 0.5657 16 6 6.4811 -8.3685 1.2448 17 7 6.5546 -9.7301 1.0999 18 1 6.0977 -10.2429 0.4150 19 6 7.3692 -10.2589 2.0677 20 6 7.8412 -9.2796 2.8546 21 6 7.2847 -8.0216 2.3521 22 6 7.3891 -6.6844 2.7238 23 7 6.7484 -5.7549 2.0439 24 6 5.4559 -2.6254 -0.2387 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6797 -0.8895 27 1 3.8746 -0.6808 0.8905 28 1 4.4654 -2.2360 2.0761 29 1 3.5271 -3.7542 1.7430 30 1 6.4064 -3.6257 1.4964 31 1 5.1972 -7.5702 -0.2869 32 1 7.5974 -11.3086 2.1801 33 1 8.5047 -9.3970 3.6986 34 1 8.0014 -6.4071 3.5690 35 1 5.7214 -2.9782 -1.2352 36 1 5.9701 -1.7038 0.0339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234524810.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:38 Heat of formation + Delta-G solvation = 87.031694 kcal Electronic energy + Delta-G solvation = -19763.853659 eV Core-core repulsion = 16636.925003 eV Total energy + Delta-G solvation = -3126.928656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.67204 -40.06058 -38.45098 -36.25812 -32.76554 -32.09198 -30.73760 -29.84852 -28.46404 -25.62416 -25.34474 -23.95771 -22.52759 -21.24887 -20.99846 -19.95088 -18.26890 -17.63753 -16.74084 -16.13809 -15.91670 -15.55666 -14.96610 -14.65443 -14.45951 -14.26431 -13.89437 -13.71861 -13.38009 -13.32874 -12.76675 -12.44266 -12.37320 -11.85201 -11.72225 -11.30137 -11.05570 -10.55329 -10.22661 -9.98369 -9.77083 -9.67054 -9.60238 -9.30732 -8.89354 -8.54937 -7.92467 -7.75012 -6.01854 -3.98953 0.84985 1.45625 2.42860 2.61553 3.29011 3.33041 3.36775 3.38164 3.81384 4.26965 4.43814 4.51645 4.59809 4.79377 4.82820 5.01281 5.11337 5.22380 5.28564 5.37748 5.52866 5.61654 5.79596 5.80766 5.89910 6.03665 6.10601 6.21677 6.33716 6.38647 6.52461 6.67817 6.73481 7.17567 7.35418 7.49926 7.72936 7.87938 7.94191 8.67305 9.09757 9.59278 11.11699 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.049016 B = 0.003177 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.110519 B = 8811.431096 C = 9035.683270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.285 1.285 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.125 3.875 10 N -0.447 5.447 11 C -0.001 4.001 12 C 0.056 3.944 13 O -0.266 6.266 14 C 0.337 3.663 15 C -0.217 4.217 16 C 0.165 3.835 17 N -0.592 5.592 18 H 0.418 0.582 19 C 0.037 3.963 20 C -0.176 4.176 21 C -0.205 4.205 22 C 0.201 3.799 23 N -0.550 5.550 24 C -0.008 4.008 25 H 0.263 0.737 26 H 0.028 0.972 27 H -0.003 1.003 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.172 0.828 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.085 0.915 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.637 -19.416 5.246 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.192 1.192 6 H -0.211 1.211 7 C -0.543 4.543 8 H 0.098 0.902 9 C -0.003 4.003 10 N -0.170 5.170 11 C -0.131 4.131 12 C -0.001 4.001 13 O -0.172 6.172 14 C 0.164 3.836 15 C -0.241 4.241 16 C 0.050 3.950 17 N -0.196 5.196 18 H 0.255 0.745 19 C -0.088 4.088 20 C -0.202 4.202 21 C -0.212 4.212 22 C 0.037 3.963 23 N -0.273 5.273 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.014 0.986 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.156 0.844 32 H 0.190 0.810 33 H 0.168 0.832 34 H 0.178 0.822 35 H 0.103 0.897 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.781 -18.798 4.662 26.292 hybrid contribution 0.515 0.491 0.044 0.713 sum 18.296 -18.307 4.706 26.307 Atomic orbital electron populations 1.69901 1.06125 1.26768 1.51220 1.24938 0.94773 0.98839 0.94955 0.86853 0.80341 0.84049 0.78464 1.20280 1.19231 1.21087 1.20973 0.88556 0.94816 1.49948 0.90172 1.20767 0.98202 0.85669 0.95613 1.69037 1.09953 1.23096 1.14878 1.24201 0.95994 0.99131 0.93742 1.23524 0.99727 0.79250 0.97624 1.86348 1.64452 1.14723 1.51706 1.19263 0.88862 0.87217 0.88239 1.19509 1.09637 0.88693 1.06302 1.17841 0.97119 0.84138 0.95909 1.41697 1.43605 1.04823 1.29518 0.74488 1.21871 0.96365 0.99116 0.91408 1.21608 1.05869 0.89824 1.02946 1.20077 1.05533 0.95368 1.00257 1.21908 0.92735 0.86106 0.95533 1.67298 1.12656 1.37799 1.09520 1.24127 0.93689 0.96079 0.99860 0.92686 0.95370 0.98578 0.90506 0.89806 0.87620 0.84377 0.81048 0.83224 0.82165 0.89694 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.50 -15.06 9.94 -34.44 -0.34 -15.40 16 8 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 9 C 0.12 3.14 3.64 -4.98 -0.02 3.12 16 10 N -0.45 -10.08 6.32 -246.10 -1.55 -11.63 16 11 C 0.00 -0.02 7.55 -7.54 -0.06 -0.08 16 12 C 0.06 0.95 4.53 -26.20 -0.12 0.84 16 13 O -0.27 -4.69 10.16 -18.99 -0.19 -4.89 16 14 C 0.34 5.22 7.48 -17.16 -0.13 5.10 16 15 C -0.22 -2.90 10.06 -39.20 -0.39 -3.29 16 16 C 0.17 1.89 7.34 -84.06 -0.62 1.28 16 17 N -0.59 -4.66 6.06 -10.60 -0.06 -4.73 16 18 H 0.42 2.11 8.96 -40.82 -0.37 1.74 16 19 C 0.04 0.24 11.82 -16.62 -0.20 0.04 16 20 C -0.18 -1.41 11.08 -37.70 -0.42 -1.83 16 21 C -0.21 -2.27 6.41 -105.14 -0.67 -2.95 16 22 C 0.20 2.32 11.26 -17.22 -0.19 2.13 16 23 N -0.55 -7.92 8.53 -13.12 -0.11 -8.04 16 24 C -0.01 -0.14 7.52 -7.54 -0.06 -0.20 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 27 H 0.00 -0.08 6.73 -51.93 -0.35 -0.43 16 28 H 0.08 1.42 7.42 -51.93 -0.39 1.04 16 29 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.11 1.63 6.84 -51.93 -0.36 1.27 16 31 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.17 0.47 8.06 -52.48 -0.42 0.04 16 33 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -35.31 307.21 -8.86 -44.17 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.36 Total: 0.27 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.31 Total: -9.38 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.96 Total: -52.02 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.19 Total: -4.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.31 -8.86 -44.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234524810.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.203 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds