Wall clock time and date at job start Mon Mar 30 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.17232 * 272.37577 * 12 11 10 14 14 C 1.35760 * 117.00097 * 243.84407 * 13 12 11 15 15 C 1.38364 * 119.32582 * 180.02562 * 14 13 12 16 16 C 1.39147 * 118.83952 * 179.97438 * 15 14 13 17 17 N 1.37125 * 134.57052 * 180.02562 * 16 15 14 18 18 H 0.96998 * 125.05188 * 359.93299 * 17 16 15 19 19 C 1.37105 * 109.89260 * 179.97438 * 17 16 15 20 20 C 1.34198 * 109.96189 * 359.97438 * 19 17 16 21 21 C 1.41144 * 118.18737 * 359.97438 * 16 15 14 22 22 C 1.39186 * 119.23284 * 0.02562 * 21 16 15 23 23 N 1.31783 * 120.22349 * 359.70278 * 22 21 16 24 24 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 27 27 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 28 28 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 29 29 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 30 30 H 1.08999 * 114.34242 * 139.68978 * 12 11 10 31 31 H 1.08003 * 120.57912 * 359.95522 * 15 14 13 32 32 H 1.08003 * 125.01726 * 179.97438 * 19 17 16 33 33 H 1.08004 * 126.51173 * 179.97438 * 20 19 17 34 34 H 1.07994 * 119.88442 * 180.02562 * 22 21 16 35 35 H 1.08997 * 113.47356 * 253.46676 * 24 10 9 36 36 H 1.08997 * 113.47044 * 23.93734 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3426 -5.0420 0.3465 14 6 5.9807 -6.0450 1.0021 15 6 5.8220 -7.3484 0.5657 16 6 6.4811 -8.3685 1.2448 17 7 6.5546 -9.7301 1.0999 18 1 6.0977 -10.2429 0.4150 19 6 7.3692 -10.2589 2.0677 20 6 7.8412 -9.2796 2.8546 21 6 7.2847 -8.0216 2.3521 22 6 7.3891 -6.6844 2.7238 23 7 6.7484 -5.7549 2.0439 24 6 5.4559 -2.6254 -0.2387 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6797 -0.8895 27 1 3.8746 -0.6808 0.8905 28 1 4.4654 -2.2360 2.0761 29 1 3.5271 -3.7542 1.7430 30 1 6.4064 -3.6257 1.4964 31 1 5.1972 -7.5702 -0.2869 32 1 7.5974 -11.3086 2.1801 33 1 8.5047 -9.3970 3.6986 34 1 8.0014 -6.4071 3.5690 35 1 5.7214 -2.9782 -1.2352 36 1 5.9701 -1.7038 0.0339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234524810.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:38 Heat of formation + Delta-G solvation = 58.184579 kcal Electronic energy + Delta-G solvation = -19765.104564 eV Core-core repulsion = 16636.925003 eV Total energy + Delta-G solvation = -3128.179561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.47673 -41.39488 -39.60072 -37.40144 -34.95596 -32.98890 -31.68224 -31.53264 -29.38308 -27.39355 -26.88408 -24.87905 -23.63315 -23.04574 -21.65176 -21.17661 -19.37109 -18.99661 -18.51260 -17.22021 -17.13065 -16.69411 -16.48515 -16.13079 -15.79326 -15.24916 -15.08752 -14.89041 -14.58030 -14.39828 -14.33091 -13.86877 -13.67364 -13.33006 -13.06741 -12.70271 -12.51321 -12.33953 -11.79577 -11.63907 -11.58217 -11.41778 -10.81730 -10.64253 -10.58832 -9.72599 -9.60652 -8.58011 -8.31237 -6.36287 -0.00872 0.53849 1.33139 1.36521 1.47547 1.73928 1.79958 2.33021 2.41952 2.86927 3.00849 3.27998 3.35784 3.42194 3.77256 3.91463 3.93214 4.22366 4.32902 4.37488 4.48310 4.54383 4.55677 4.61393 4.70994 4.73614 4.81120 4.86671 4.93867 5.06082 5.41305 5.45632 5.68523 5.70234 5.91279 5.95467 6.38263 6.55349 6.62459 6.69368 6.97450 7.27032 8.86457 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.049016 B = 0.003177 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.110519 B = 8811.431096 C = 9035.683270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.245 1.245 6 H -0.280 1.280 7 C -0.523 4.523 8 H 0.024 0.976 9 C 0.136 3.864 10 N -0.487 5.487 11 C -0.006 4.006 12 C 0.078 3.922 13 O -0.292 6.292 14 C 0.301 3.699 15 C -0.223 4.223 16 C 0.144 3.856 17 N -0.582 5.582 18 H 0.431 0.569 19 C 0.055 3.945 20 C -0.191 4.191 21 C -0.212 4.212 22 C 0.193 3.807 23 N -0.569 5.569 24 C -0.002 4.002 25 H 0.268 0.732 26 H 0.032 0.968 27 H 0.011 0.989 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.218 0.782 33 H 0.177 0.823 34 H 0.192 0.808 35 H 0.090 0.910 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.942 -20.249 6.213 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.169 1.169 6 H -0.205 1.205 7 C -0.561 4.561 8 H 0.043 0.957 9 C 0.008 3.992 10 N -0.209 5.209 11 C -0.135 4.135 12 C 0.020 3.980 13 O -0.200 6.200 14 C 0.130 3.870 15 C -0.248 4.248 16 C 0.027 3.973 17 N -0.187 5.187 18 H 0.271 0.729 19 C -0.070 4.070 20 C -0.217 4.217 21 C -0.219 4.219 22 C 0.030 3.970 23 N -0.292 5.292 24 C -0.131 4.131 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.234 0.766 33 H 0.194 0.806 34 H 0.209 0.791 35 H 0.108 0.892 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 21.105 -19.689 5.626 29.407 hybrid contribution -0.529 0.431 -0.214 0.715 sum 20.577 -19.258 5.412 28.698 Atomic orbital electron populations 1.70077 1.08401 1.28319 1.52392 1.26012 0.95755 1.03617 0.94014 0.85575 0.79406 0.77658 0.79457 1.18673 1.16863 1.20538 1.21222 0.91390 0.93019 1.50456 0.95743 1.20544 0.94833 0.87684 0.96105 1.68936 1.13505 1.21520 1.16985 1.24263 0.97021 0.99430 0.92819 1.23283 0.98486 0.79243 0.96939 1.86292 1.65746 1.15198 1.52749 1.19438 0.90682 0.87228 0.89676 1.19601 1.09851 0.88789 1.06529 1.17919 0.97567 0.85457 0.96325 1.41871 1.43270 1.03593 1.29972 0.72949 1.22676 0.93941 1.00924 0.89415 1.22004 1.06851 0.88430 1.04367 1.20509 1.05096 0.96330 0.99997 1.22456 0.92442 0.86263 0.95868 1.67230 1.13274 1.39002 1.09667 1.24208 0.90703 0.97535 1.00663 0.92297 0.94982 0.97136 0.89219 0.92082 0.85661 0.84435 0.76552 0.80581 0.79108 0.89207 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 2 C 0.00 0.17 5.47 84.66 0.46 0.64 16 3 Si 0.96 44.91 27.47 68.60 1.88 46.80 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.52 -32.41 9.94 25.60 0.25 -32.16 16 8 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.14 6.85 3.64 85.55 0.31 7.16 16 10 N -0.49 -22.35 6.32 -932.93 -5.89 -28.24 16 11 C -0.01 -0.24 7.55 83.58 0.63 0.39 16 12 C 0.08 2.65 4.53 30.94 0.14 2.79 16 13 O -0.29 -10.69 10.16 -90.86 -0.92 -11.61 16 14 C 0.30 9.60 7.48 84.60 0.63 10.23 16 15 C -0.22 -6.12 10.06 22.52 0.23 -5.89 16 16 C 0.14 3.15 7.34 39.25 0.29 3.44 16 17 N -0.58 -7.70 6.06 -187.44 -1.14 -8.84 16 18 H 0.43 3.31 8.96 -92.71 -0.83 2.48 16 19 C 0.05 0.49 11.82 82.95 0.98 1.47 16 20 C -0.19 -2.40 11.08 23.49 0.26 -2.14 16 21 C -0.21 -4.32 6.41 -20.20 -0.13 -4.45 16 22 C 0.19 4.22 11.26 84.93 0.96 5.18 16 23 N -0.57 -16.29 8.53 -308.06 -2.63 -18.92 16 24 C 0.00 -0.08 7.52 83.57 0.63 0.55 16 25 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 26 H 0.03 1.58 7.14 -2.38 -0.02 1.56 16 27 H 0.01 0.51 6.73 -2.39 -0.02 0.50 16 28 H 0.09 3.30 7.42 -2.39 -0.02 3.29 16 29 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.13 3.75 6.84 -2.39 -0.02 3.74 16 31 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.22 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.10 3.04 7.91 -2.39 -0.02 3.02 16 Total: -1.00 -81.16 307.21 -2.53 -83.68 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.22 Total: 11.59 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.64 Total: -12.79 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -9.35 Total: -117.67 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.92 Total: -11.61 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Total: -81.16 -2.53 -83.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234524810.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.869 kcal (2) G-P(sol) polarization free energy of solvation -81.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds