Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46947 * 2 1 4 4 N 1.46502 * 109.46885 * 119.99957 * 2 1 3 5 5 C 1.36562 * 125.45868 * 299.97069 * 4 2 1 6 6 C 1.34507 * 108.63067 * 180.02562 * 5 4 2 7 7 C 1.42020 * 107.31171 * 0.02562 * 6 5 4 8 8 C 1.47751 * 126.51388 * 179.97438 * 7 6 5 9 9 C 1.39170 * 120.33166 * 130.28303 * 8 7 6 10 10 C 1.38273 * 119.95504 * 180.29686 * 9 8 7 11 11 F 1.35098 * 119.68619 * 179.69059 * 10 9 8 12 12 C 1.39269 * 120.62459 * 359.67402 * 10 9 8 13 13 C 1.36312 * 120.67082 * 0.04164 * 12 10 9 14 14 C 1.40790 * 120.02253 * 0.02562 * 13 12 10 15 15 C 1.40798 * 120.30654 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99754 * 153.36241 * 15 14 13 17 17 C 1.39947 * 120.00049 * 333.35681 * 15 14 13 18 18 N 1.30869 * 119.99925 * 344.01594 * 17 15 14 19 19 Si 1.86799 * 119.99852 * 164.01235 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00559 * 19 17 15 21 21 H 1.48501 * 109.47015 * 210.00120 * 19 17 15 22 22 H 1.48496 * 109.47506 * 330.00279 * 19 17 15 23 23 C 1.35901 * 125.46042 * 120.28537 * 4 2 1 24 24 H 1.09000 * 109.47101 * 300.00056 * 1 2 3 25 25 H 1.08995 * 109.46808 * 60.00208 * 1 2 3 26 26 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47101 * 239.99944 * 2 1 3 28 28 H 1.08995 * 109.47196 * 299.99554 * 3 2 1 29 29 H 1.09000 * 109.47266 * 60.00046 * 3 2 1 30 30 H 1.09005 * 109.47208 * 179.97438 * 3 2 1 31 31 H 1.08003 * 125.68199 * 0.04217 * 5 4 2 32 32 H 1.07998 * 126.34102 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.01777 * 359.97438 * 9 8 7 34 34 H 1.08003 * 119.66447 * 180.02562 * 12 10 9 35 35 H 1.08002 * 119.98634 * 179.97438 * 13 12 10 36 36 H 0.97001 * 119.99838 * 179.97438 * 18 17 15 37 37 H 1.07998 * 125.99221 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7585 -0.3222 2.4852 6 6 2.3715 -1.1885 3.3117 7 6 3.0451 -2.1408 2.5016 8 6 3.8539 -3.2829 2.9754 9 6 3.6343 -4.5591 2.4656 10 6 4.3915 -5.6234 2.9191 11 9 4.1696 -6.8611 2.4251 12 6 5.3811 -5.4316 3.8801 13 6 5.6216 -4.1916 4.3926 14 6 4.8661 -3.0884 3.9517 15 6 5.1091 -1.8051 4.4774 16 1 4.8790 -0.9285 3.8899 17 6 5.6487 -1.6654 5.7611 18 7 5.6385 -2.6789 6.5890 19 14 6.3835 -0.0324 6.2927 20 1 5.3278 0.8063 6.9151 21 1 7.4679 -0.2748 7.2778 22 1 6.9390 0.6697 5.1079 23 6 2.8074 -1.7971 1.2009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.1602 0.5237 2.7903 32 1 2.3551 -1.1639 4.3913 33 1 2.8694 -4.7189 1.7201 34 1 5.9637 -6.2739 4.2230 35 1 6.3915 -4.0555 5.1378 36 1 6.0128 -2.5821 7.4786 37 1 3.1801 -2.3146 0.3293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239068733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = 8.998309 kcal Electronic energy + Delta-G solvation = -20359.325727 eV Core-core repulsion = 17209.093328 eV Total energy + Delta-G solvation = -3150.232399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.37612 -40.54178 -37.31968 -35.06375 -33.55158 -30.78820 -29.40687 -28.73799 -27.38473 -27.22061 -24.89614 -22.36549 -21.35292 -20.88534 -18.85972 -18.63832 -17.33169 -16.80278 -15.65086 -15.29145 -14.55345 -14.40986 -14.31027 -14.12536 -13.96930 -13.26750 -13.05073 -12.64167 -12.59793 -12.28273 -12.05470 -11.85135 -11.78817 -11.64160 -11.57458 -11.26005 -11.14907 -11.08770 -10.86955 -10.68035 -10.24877 -9.87617 -9.42831 -9.13346 -8.01976 -7.56942 -7.28941 -6.97266 -6.71468 -4.28180 2.57640 2.77883 3.05348 3.07285 3.10754 3.17819 3.41957 3.92744 4.00825 4.57904 4.60770 4.91860 5.00459 5.34924 5.38328 5.59191 5.59806 5.62585 5.73453 5.85933 5.94149 5.96104 6.05262 6.19542 6.23741 6.46553 6.65865 6.92914 6.99362 7.15078 7.23396 7.26480 7.54078 7.67650 7.80700 7.91925 8.04837 8.07918 8.13795 8.26896 8.60495 8.86327 8.95119 10.15886 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.007271 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.133656 B = 3849.958516 C = 5785.521090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.162 4.162 4 N -0.449 5.449 5 C -0.038 4.038 6 C -0.161 4.161 7 C -0.066 4.066 8 C -0.117 4.117 9 C -0.105 4.105 10 C -0.050 4.050 11 F -0.177 7.177 12 C -0.130 4.130 13 C -0.140 4.140 14 C 0.118 3.882 15 C -0.434 4.434 16 H 0.086 0.914 17 C 0.074 3.926 18 N -0.792 5.792 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.036 4.036 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.281 0.719 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 7.242 -8.017 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 C -0.219 4.219 4 N -0.128 5.128 5 C -0.165 4.165 6 C -0.186 4.186 7 C -0.072 4.072 8 C -0.119 4.119 9 C -0.125 4.125 10 C -0.070 4.070 11 F -0.156 7.156 12 C -0.149 4.149 13 C -0.159 4.159 14 C 0.115 3.885 15 C -0.463 4.463 16 H 0.104 0.896 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.731 3.269 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.164 4.164 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.143 0.857 36 H 0.092 0.908 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.750 7.327 -8.088 12.336 hybrid contribution 0.294 0.441 0.346 0.633 sum -5.456 7.768 -7.742 12.250 Atomic orbital electron populations 1.22160 0.94256 1.02897 1.02544 1.21229 0.94759 0.93699 0.87441 1.22165 1.02243 0.95013 1.02517 1.43838 1.40667 1.23199 1.05101 1.21393 1.08787 1.03572 0.82774 1.21004 1.01766 0.96846 0.98983 1.18134 1.00934 0.97239 0.90922 1.17908 0.99225 0.89968 1.04799 1.20520 0.99299 0.92104 1.00544 1.17177 1.05766 0.79039 1.05016 1.91268 1.95061 1.41563 1.87736 1.20438 0.98384 0.98076 0.98022 1.20896 1.01502 0.91306 1.02179 1.17604 0.88176 0.93370 0.89373 1.19530 1.34240 0.93749 0.98806 0.89565 1.25966 0.93663 0.98294 0.96515 1.69832 1.33527 1.32023 1.06315 0.86336 0.79347 0.82148 0.79115 1.19427 1.20187 1.18459 1.21841 1.03210 0.92949 0.98427 0.91860 0.91383 0.91884 0.89095 0.91397 0.91852 0.91755 0.83602 0.84770 0.88322 0.88492 0.85743 0.90782 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.24 37.16 0.34 -1.20 16 2 C 0.13 1.50 3.54 -67.93 -0.24 1.25 16 3 C -0.16 -1.61 9.23 37.16 0.34 -1.27 16 4 N -0.45 -7.07 2.61 -109.68 -0.29 -7.36 16 5 C -0.04 -0.64 10.29 -16.76 -0.17 -0.81 16 6 C -0.16 -3.30 9.21 -39.45 -0.36 -3.67 16 7 C -0.07 -1.43 4.95 -105.15 -0.52 -1.95 16 8 C -0.12 -2.85 5.82 -104.24 -0.61 -3.46 16 9 C -0.11 -2.50 9.68 -39.22 -0.38 -2.88 16 10 C -0.05 -1.23 7.30 -39.19 -0.29 -1.51 16 11 F -0.18 -4.15 17.26 2.25 0.04 -4.11 16 12 C -0.13 -3.17 9.94 -39.89 -0.40 -3.57 16 13 C -0.14 -3.59 8.61 -39.31 -0.34 -3.93 16 14 C 0.12 3.07 5.58 -106.54 -0.59 2.47 16 15 C -0.43 -11.08 7.75 -37.97 -0.29 -11.38 16 16 H 0.09 2.19 6.71 -52.48 -0.35 1.84 16 17 C 0.07 1.79 5.16 -17.32 -0.09 1.70 16 18 N -0.79 -19.86 10.98 55.55 0.61 -19.25 16 19 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.04 -0.67 11.27 -16.34 -0.18 -0.85 16 24 H 0.06 0.62 7.91 -51.93 -0.41 0.21 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.94 8.06 -51.93 -0.42 0.52 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.15 2.03 8.06 -52.48 -0.42 1.61 16 32 H 0.13 2.89 7.97 -52.49 -0.42 2.47 16 33 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 35 H 0.12 3.24 6.24 -52.49 -0.33 2.91 16 36 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 37 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -27.96 317.24 -8.52 -36.48 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.85 Total: 7.18 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -3.78 Total: -31.05 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.32 Total: -26.61 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.96 -8.52 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239068733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.480 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds