Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46947 * 2 1 4 4 N 1.46502 * 109.46885 * 119.99957 * 2 1 3 5 5 C 1.36562 * 125.45868 * 299.97069 * 4 2 1 6 6 C 1.34507 * 108.63067 * 180.02562 * 5 4 2 7 7 C 1.42020 * 107.31171 * 0.02562 * 6 5 4 8 8 C 1.47751 * 126.51388 * 179.97438 * 7 6 5 9 9 C 1.39170 * 120.33166 * 130.28303 * 8 7 6 10 10 C 1.38273 * 119.95504 * 180.29686 * 9 8 7 11 11 F 1.35098 * 119.68619 * 179.69059 * 10 9 8 12 12 C 1.39269 * 120.62459 * 359.67402 * 10 9 8 13 13 C 1.36312 * 120.67082 * 0.04164 * 12 10 9 14 14 C 1.40790 * 120.02253 * 0.02562 * 13 12 10 15 15 C 1.40798 * 120.30654 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99754 * 153.36241 * 15 14 13 17 17 C 1.39947 * 120.00049 * 333.35681 * 15 14 13 18 18 N 1.30869 * 119.99925 * 344.01594 * 17 15 14 19 19 Si 1.86799 * 119.99852 * 164.01235 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00559 * 19 17 15 21 21 H 1.48501 * 109.47015 * 210.00120 * 19 17 15 22 22 H 1.48496 * 109.47506 * 330.00279 * 19 17 15 23 23 C 1.35901 * 125.46042 * 120.28537 * 4 2 1 24 24 H 1.09000 * 109.47101 * 300.00056 * 1 2 3 25 25 H 1.08995 * 109.46808 * 60.00208 * 1 2 3 26 26 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47101 * 239.99944 * 2 1 3 28 28 H 1.08995 * 109.47196 * 299.99554 * 3 2 1 29 29 H 1.09000 * 109.47266 * 60.00046 * 3 2 1 30 30 H 1.09005 * 109.47208 * 179.97438 * 3 2 1 31 31 H 1.08003 * 125.68199 * 0.04217 * 5 4 2 32 32 H 1.07998 * 126.34102 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.01777 * 359.97438 * 9 8 7 34 34 H 1.08003 * 119.66447 * 180.02562 * 12 10 9 35 35 H 1.08002 * 119.98634 * 179.97438 * 13 12 10 36 36 H 0.97001 * 119.99838 * 179.97438 * 18 17 15 37 37 H 1.07998 * 125.99221 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7585 -0.3222 2.4852 6 6 2.3715 -1.1885 3.3117 7 6 3.0451 -2.1408 2.5016 8 6 3.8539 -3.2829 2.9754 9 6 3.6343 -4.5591 2.4656 10 6 4.3915 -5.6234 2.9191 11 9 4.1696 -6.8611 2.4251 12 6 5.3811 -5.4316 3.8801 13 6 5.6216 -4.1916 4.3926 14 6 4.8661 -3.0884 3.9517 15 6 5.1091 -1.8051 4.4774 16 1 4.8790 -0.9285 3.8899 17 6 5.6487 -1.6654 5.7611 18 7 5.6385 -2.6789 6.5890 19 14 6.3835 -0.0324 6.2927 20 1 5.3278 0.8063 6.9151 21 1 7.4679 -0.2748 7.2778 22 1 6.9390 0.6697 5.1079 23 6 2.8074 -1.7971 1.2009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.1602 0.5237 2.7903 32 1 2.3551 -1.1639 4.3913 33 1 2.8694 -4.7189 1.7201 34 1 5.9637 -6.2739 4.2230 35 1 6.3915 -4.0555 5.1378 36 1 6.0128 -2.5821 7.4786 37 1 3.1801 -2.3146 0.3293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239068733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = -2.609991 kcal Electronic energy + Delta-G solvation = -20359.829101 eV Core-core repulsion = 17209.093328 eV Total energy + Delta-G solvation = -3150.735773 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.28156 -41.92110 -39.15235 -36.14720 -35.43045 -32.45004 -31.28942 -30.15007 -28.80904 -28.13038 -26.77542 -23.80656 -22.80738 -22.73299 -20.36757 -20.08091 -19.19568 -18.16166 -17.32821 -17.06002 -16.35259 -16.03876 -15.79174 -15.48802 -15.33450 -14.67942 -14.40437 -14.22504 -13.96745 -13.72912 -13.49644 -13.37405 -13.17304 -12.98593 -12.85858 -12.79252 -12.59395 -12.49387 -12.14609 -12.10010 -11.88476 -11.68772 -11.28434 -10.98965 -9.73880 -9.20828 -9.04912 -8.71479 -8.46038 -6.21447 0.75460 0.91599 1.40311 1.48258 1.54882 1.59916 2.22200 2.22595 2.36931 2.71718 3.68489 3.76531 4.00221 4.08381 4.16386 4.25909 4.33621 4.37539 4.51888 4.68942 4.71356 4.82765 4.87142 4.96332 5.05574 5.12752 5.16588 5.24639 5.29633 5.34447 5.41846 5.61587 5.74054 5.84618 5.98536 6.12312 6.29635 6.36961 6.55373 6.68307 6.78038 6.95153 7.03439 8.33899 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.007271 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.133656 B = 3849.958516 C = 5785.521090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 C -0.157 4.157 4 N -0.437 5.437 5 C -0.014 4.014 6 C -0.198 4.198 7 C -0.110 4.110 8 C -0.117 4.117 9 C -0.111 4.111 10 C -0.061 4.061 11 F -0.172 7.172 12 C -0.135 4.135 13 C -0.160 4.160 14 C 0.088 3.912 15 C -0.451 4.451 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.026 4.026 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.180 0.820 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.289 0.711 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 9.384 -9.596 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 C -0.215 4.215 4 N -0.114 5.114 5 C -0.143 4.143 6 C -0.223 4.223 7 C -0.117 4.117 8 C -0.120 4.120 9 C -0.130 4.130 10 C -0.081 4.081 11 F -0.151 7.151 12 C -0.154 4.154 13 C -0.179 4.179 14 C 0.085 3.915 15 C -0.480 4.480 16 H 0.098 0.902 17 C -0.179 4.179 18 N -0.447 5.447 19 Si 0.797 3.203 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.157 4.157 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.198 0.802 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.833 9.469 -9.693 15.176 hybrid contribution 0.527 -0.210 0.741 0.933 sum -6.306 9.259 -8.952 14.340 Atomic orbital electron populations 1.22138 0.92447 1.02651 1.04076 1.21685 0.96145 0.94287 0.85799 1.22152 1.01243 0.94020 1.04080 1.44182 1.38867 1.22079 1.06253 1.21695 1.07009 1.02903 0.82678 1.20893 1.04353 0.98653 0.98367 1.18192 1.02878 0.97854 0.92784 1.18279 0.98603 0.91308 1.03770 1.20737 0.99611 0.91757 1.00938 1.17317 1.06050 0.79464 1.05247 1.91269 1.95037 1.41182 1.87645 1.20595 0.98671 0.98209 0.97974 1.20855 1.02028 0.92067 1.02966 1.17991 0.89006 0.93932 0.90530 1.19601 1.35470 0.93361 0.99573 0.90220 1.26748 0.93376 1.01811 0.96010 1.69879 1.33935 1.34008 1.06902 0.85287 0.78693 0.77649 0.78679 1.18670 1.19124 1.18459 1.21965 1.02619 0.93470 0.97619 0.91877 0.88356 0.93016 0.87715 0.88283 0.91906 0.93295 0.80244 0.87158 0.86468 0.86785 0.86816 0.90006 0.81547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.24 71.98 0.66 -1.71 16 2 C 0.12 2.33 3.54 44.99 0.16 2.49 16 3 C -0.16 -2.54 9.23 71.98 0.66 -1.87 16 4 N -0.44 -12.77 2.61 -500.91 -1.31 -14.08 16 5 C -0.01 -0.44 10.29 83.10 0.86 0.42 16 6 C -0.20 -8.25 9.21 22.35 0.21 -8.04 16 7 C -0.11 -4.87 4.95 -20.20 -0.10 -4.97 16 8 C -0.12 -5.90 5.82 -19.61 -0.11 -6.02 16 9 C -0.11 -5.35 9.68 22.50 0.22 -5.13 16 10 C -0.06 -3.01 7.30 22.53 0.16 -2.85 16 11 F -0.17 -8.02 17.26 44.97 0.78 -7.25 16 12 C -0.14 -6.77 9.94 22.07 0.22 -6.55 16 13 C -0.16 -8.55 8.61 22.44 0.19 -8.36 16 14 C 0.09 4.79 5.58 -21.11 -0.12 4.67 16 15 C -0.45 -23.86 7.75 23.31 0.18 -23.68 16 16 H 0.08 4.20 6.71 -2.91 -0.02 4.18 16 17 C 0.04 1.78 5.16 85.25 0.44 2.22 16 18 N -0.82 -42.36 10.98 21.83 0.24 -42.12 16 19 Si 0.98 37.91 29.59 68.60 2.03 39.94 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 C -0.03 -0.95 11.27 83.68 0.94 0.00 16 24 H 0.06 0.99 7.91 -2.39 -0.02 0.97 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 1.77 8.06 -2.39 -0.02 1.75 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.04 7.91 -2.39 -0.02 1.02 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.11 5.00 7.97 -2.91 -0.02 4.98 16 33 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 35 H 0.11 6.22 6.24 -2.91 -0.02 6.20 16 36 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 37 H 0.17 5.32 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -62.43 317.24 7.38 -55.05 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 1.06 Total: 27.87 kcal Atomic # 6 Polarization: -63.98 SS G_CDS: 4.58 Total: -59.40 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -1.07 Total: -56.20 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.78 Total: -7.25 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -62.43 7.38 -55.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239068733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.437 kcal (2) G-P(sol) polarization free energy of solvation -62.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds