Wall clock time and date at job start Mon Mar 30 2020 01:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35514 * 116.99900 * 2 1 4 4 C 1.39149 * 120.46920 * 359.96981 * 3 2 1 5 5 C 1.38263 * 118.66290 * 180.02562 * 4 3 2 6 6 C 1.40271 * 119.55811 * 359.97438 * 5 4 3 7 7 C 1.47763 * 119.53575 * 179.97438 * 6 5 4 8 8 C 1.37776 * 126.44073 * 350.72601 * 7 6 5 9 9 C 1.39415 * 107.68155 * 179.97438 * 8 7 6 10 10 C 1.50700 * 125.65571 * 180.02562 * 9 8 7 11 11 N 1.30910 * 108.69333 * 359.97438 * 9 8 7 12 12 N 1.36427 * 126.43819 * 170.41103 * 7 6 5 13 13 C 1.46496 * 126.12032 * 0.02562 * 12 7 6 14 14 N 1.32345 * 120.92817 * 0.02562 * 6 5 4 15 15 C 1.33568 * 121.44086 * 359.97438 * 14 6 5 16 16 C 1.40967 * 119.82762 * 179.72217 * 15 14 6 17 17 H 1.08001 * 120.00307 * 164.94630 * 16 15 14 18 18 C 1.40001 * 119.99920 * 344.95445 * 16 15 14 19 19 N 1.30784 * 120.00102 * 350.48393 * 18 16 15 20 20 Si 1.86800 * 120.00077 * 170.48964 * 18 16 15 21 21 H 1.48509 * 109.47079 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47222 * 119.99308 * 20 18 16 23 23 H 1.48501 * 109.47147 * 239.99646 * 20 18 16 24 24 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47454 * 300.00294 * 1 2 3 26 26 H 1.08996 * 109.46855 * 60.00907 * 1 2 3 27 27 H 1.08006 * 120.67103 * 0.05198 * 4 3 2 28 28 H 1.07997 * 120.22367 * 179.97438 * 5 4 3 29 29 H 1.07997 * 126.15723 * 359.95871 * 8 7 6 30 30 H 1.08994 * 109.47052 * 89.99917 * 10 9 8 31 31 H 1.08994 * 109.47232 * 210.00210 * 10 9 8 32 32 H 1.09004 * 109.46862 * 329.99932 * 10 9 8 33 33 H 1.09005 * 109.47516 * 85.16116 * 13 12 7 34 34 H 1.08995 * 109.47151 * 205.16551 * 13 12 7 35 35 H 1.09002 * 109.47330 * 325.15797 * 13 12 7 36 36 H 0.97003 * 120.00436 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.2959 2.3806 -0.0006 5 6 1.9621 3.5921 -0.0012 6 6 3.3647 3.6106 -0.0005 7 6 4.0762 4.9056 -0.0016 8 6 3.5116 6.1494 -0.1819 9 6 4.5349 7.0935 -0.1097 10 6 4.3664 8.5842 -0.2520 11 7 5.6663 6.4704 0.1035 12 7 5.4147 5.0950 0.1817 13 6 6.4111 4.0468 0.4156 14 7 4.0598 2.4843 0.0001 15 6 3.4559 1.2930 0.0006 16 6 4.2297 0.1147 -0.0046 17 1 3.7722 -0.8330 0.2386 18 6 5.5913 0.1729 -0.3250 19 7 6.1051 1.2786 -0.7981 20 14 6.6742 -1.3289 -0.0770 21 1 5.8576 -2.4437 0.4667 22 1 7.2631 -1.7350 -1.3783 23 1 7.7630 -1.0017 0.8785 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.2164 2.3455 -0.0003 28 1 1.4063 4.5181 -0.0021 29 1 2.4648 6.3558 -0.3494 30 1 4.1800 9.0240 0.7277 31 1 5.2739 9.0136 -0.6763 32 1 3.5233 8.7933 -0.9105 33 1 6.7459 3.6438 -0.5402 34 1 7.2623 4.4676 0.9507 35 1 5.9664 3.2490 1.0106 36 1 7.0485 1.3189 -1.0205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240857997.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:04 Heat of formation + Delta-G solvation = 67.367071 kcal Electronic energy + Delta-G solvation = -20783.475454 eV Core-core repulsion = 17655.694076 eV Total energy + Delta-G solvation = -3127.781378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37056 -38.95523 -36.79120 -33.86369 -33.21029 -30.94227 -30.44095 -29.14514 -28.29299 -26.66286 -25.50321 -24.65575 -22.13810 -21.69796 -19.58545 -18.75035 -17.50442 -16.80965 -16.28134 -15.37619 -14.95852 -14.89036 -14.72113 -14.18096 -13.49375 -13.14991 -13.01664 -12.87769 -12.59977 -12.42825 -12.32027 -12.14176 -11.56775 -11.48498 -11.38790 -11.31631 -11.27795 -10.75062 -10.59930 -10.54010 -10.07464 -9.88112 -9.49265 -8.60371 -8.35417 -7.96156 -7.87054 -7.03651 -6.70090 -4.52502 1.90523 2.64289 2.95194 3.04843 3.08600 3.10112 3.27613 3.56022 3.87253 4.27293 4.60531 5.11122 5.20705 5.57221 5.59105 5.63511 5.71557 5.79209 5.84822 5.86613 5.90580 6.01693 6.10220 6.24195 6.33106 6.35272 6.44427 6.57575 6.80766 6.85551 7.07134 7.19910 7.31733 7.34835 7.61444 7.80275 8.04475 8.17298 8.44651 8.56831 8.82351 9.72636 10.13463 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.007235 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.412554 B = 3869.187131 C = 5598.747603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C -0.016 4.016 4 C -0.149 4.149 5 C -0.242 4.242 6 C 0.160 3.840 7 C 0.169 3.831 8 C -0.277 4.277 9 C 0.056 3.944 10 C -0.064 4.064 11 N -0.316 5.316 12 N -0.345 5.345 13 C 0.118 3.882 14 N -0.462 5.462 15 C 0.261 3.739 16 C -0.417 4.417 17 H 0.093 0.907 18 C 0.077 3.923 19 N -0.734 5.734 20 Si 0.909 3.091 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.272 1.272 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 3.496 1.046 5.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.065 4.065 4 C -0.173 4.173 5 C -0.267 4.267 6 C 0.019 3.981 7 C 0.039 3.961 8 C -0.308 4.308 9 C -0.107 4.107 10 C -0.123 4.123 11 N -0.141 5.141 12 N -0.126 5.126 13 C -0.023 4.023 14 N -0.177 5.177 15 C 0.133 3.867 16 C -0.449 4.449 17 H 0.111 0.889 18 C -0.148 4.148 19 N -0.356 5.356 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.197 1.197 24 H 0.103 0.897 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.200 3.425 1.154 3.808 hybrid contribution -1.626 -0.640 -0.134 1.753 sum -2.826 2.785 1.020 4.097 Atomic orbital electron populations 1.22797 0.81393 1.02118 1.00101 1.85950 1.18562 1.27639 1.89759 1.20402 0.93699 0.83352 1.09047 1.20901 0.98087 0.92368 1.05910 1.20866 0.93193 0.96695 1.15984 1.18811 0.89453 0.89906 0.99963 1.19891 0.83711 0.93574 0.98909 1.21295 0.99916 0.90121 1.19455 1.21931 0.91014 0.96558 1.01204 1.20060 1.02275 0.87906 1.02062 1.77082 1.22961 0.87481 1.26617 1.48796 1.06053 1.04631 1.53074 1.22080 0.89264 0.86941 1.03975 1.68729 1.35396 0.95582 1.18040 1.18005 0.85129 0.91681 0.91880 1.19474 0.93039 0.93735 1.38616 0.88931 1.25977 0.98619 0.97166 0.92993 1.70003 1.13583 1.26202 1.25836 0.86234 0.79799 0.81776 0.78838 1.18281 1.19909 1.19687 0.89696 0.94027 0.93965 0.87274 0.87607 0.84098 0.91227 0.91544 0.90968 0.89596 0.92284 0.87418 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.83 101.05 0.99 1.49 16 2 O -0.31 -6.62 9.67 -18.23 -0.18 -6.80 16 3 C -0.02 -0.37 6.74 -38.03 -0.26 -0.63 16 4 C -0.15 -3.17 9.11 -39.23 -0.36 -3.53 16 5 C -0.24 -5.29 9.61 -38.81 -0.37 -5.66 16 6 C 0.16 3.84 6.73 -82.99 -0.56 3.29 16 7 C 0.17 3.81 6.91 -82.10 -0.57 3.24 16 8 C -0.28 -5.46 10.14 -39.31 -0.40 -5.86 16 9 C 0.06 1.04 7.18 -82.55 -0.59 0.45 16 10 C -0.06 -0.85 10.44 36.01 0.38 -0.47 16 11 N -0.32 -6.65 12.55 33.59 0.42 -6.23 16 12 N -0.34 -7.66 4.06 -63.90 -0.26 -7.92 16 13 C 0.12 2.45 9.95 59.84 0.60 3.05 16 14 N -0.46 -11.84 5.74 -7.63 -0.04 -11.89 16 15 C 0.26 6.79 6.46 -84.86 -0.55 6.24 16 16 C -0.42 -10.61 8.87 -37.89 -0.34 -10.95 16 17 H 0.09 2.31 7.43 -52.49 -0.39 1.92 16 18 C 0.08 1.81 5.43 -17.34 -0.09 1.72 16 19 N -0.73 -17.64 9.85 55.55 0.55 -17.09 16 20 Si 0.91 17.74 29.57 -169.99 -5.03 12.71 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.11 1.96 6.43 -52.48 -0.34 1.63 16 28 H 0.11 2.03 7.07 -52.49 -0.37 1.66 16 29 H 0.14 2.41 7.36 -52.49 -0.39 2.03 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.84 7.15 -51.93 -0.37 1.47 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.11 2.43 6.52 -51.93 -0.34 2.09 16 36 H 0.28 6.00 8.30 -40.82 -0.34 5.66 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -28.98 306.48 -6.28 -35.26 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.24 Total: 4.95 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.12 Total: -7.61 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.67 Total: -43.12 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.18 Total: -6.80 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.98 -6.28 -35.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240857997.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.624 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds