Wall clock time and date at job start Mon Mar 30 2020 01:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35514 * 116.99900 * 2 1 4 4 C 1.39149 * 120.46920 * 359.96981 * 3 2 1 5 5 C 1.38263 * 118.66290 * 180.02562 * 4 3 2 6 6 C 1.40271 * 119.55811 * 359.97438 * 5 4 3 7 7 C 1.47763 * 119.53575 * 179.97438 * 6 5 4 8 8 C 1.37776 * 126.44073 * 350.72601 * 7 6 5 9 9 C 1.39415 * 107.68155 * 179.97438 * 8 7 6 10 10 C 1.50700 * 125.65571 * 180.02562 * 9 8 7 11 11 N 1.30910 * 108.69333 * 359.97438 * 9 8 7 12 12 N 1.36427 * 126.43819 * 170.41103 * 7 6 5 13 13 C 1.46496 * 126.12032 * 0.02562 * 12 7 6 14 14 N 1.32345 * 120.92817 * 0.02562 * 6 5 4 15 15 C 1.33568 * 121.44086 * 359.97438 * 14 6 5 16 16 C 1.40967 * 119.82762 * 179.72217 * 15 14 6 17 17 H 1.08001 * 120.00307 * 164.94630 * 16 15 14 18 18 C 1.40001 * 119.99920 * 344.95445 * 16 15 14 19 19 N 1.30784 * 120.00102 * 350.48393 * 18 16 15 20 20 Si 1.86800 * 120.00077 * 170.48964 * 18 16 15 21 21 H 1.48509 * 109.47079 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47222 * 119.99308 * 20 18 16 23 23 H 1.48501 * 109.47147 * 239.99646 * 20 18 16 24 24 H 1.09004 * 109.47079 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47454 * 300.00294 * 1 2 3 26 26 H 1.08996 * 109.46855 * 60.00907 * 1 2 3 27 27 H 1.08006 * 120.67103 * 0.05198 * 4 3 2 28 28 H 1.07997 * 120.22367 * 179.97438 * 5 4 3 29 29 H 1.07997 * 126.15723 * 359.95871 * 8 7 6 30 30 H 1.08994 * 109.47052 * 89.99917 * 10 9 8 31 31 H 1.08994 * 109.47232 * 210.00210 * 10 9 8 32 32 H 1.09004 * 109.46862 * 329.99932 * 10 9 8 33 33 H 1.09005 * 109.47516 * 85.16116 * 13 12 7 34 34 H 1.08995 * 109.47151 * 205.16551 * 13 12 7 35 35 H 1.09002 * 109.47330 * 325.15797 * 13 12 7 36 36 H 0.97003 * 120.00436 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.2959 2.3806 -0.0006 5 6 1.9621 3.5921 -0.0012 6 6 3.3647 3.6106 -0.0005 7 6 4.0762 4.9056 -0.0016 8 6 3.5116 6.1494 -0.1819 9 6 4.5349 7.0935 -0.1097 10 6 4.3664 8.5842 -0.2520 11 7 5.6663 6.4704 0.1035 12 7 5.4147 5.0950 0.1817 13 6 6.4111 4.0468 0.4156 14 7 4.0598 2.4843 0.0001 15 6 3.4559 1.2930 0.0006 16 6 4.2297 0.1147 -0.0046 17 1 3.7722 -0.8330 0.2386 18 6 5.5913 0.1729 -0.3250 19 7 6.1051 1.2786 -0.7981 20 14 6.6742 -1.3289 -0.0770 21 1 5.8576 -2.4437 0.4667 22 1 7.2631 -1.7350 -1.3783 23 1 7.7630 -1.0017 0.8785 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.2164 2.3455 -0.0003 28 1 1.4063 4.5181 -0.0021 29 1 2.4648 6.3558 -0.3494 30 1 4.1800 9.0240 0.7277 31 1 5.2739 9.0136 -0.6763 32 1 3.5233 8.7933 -0.9105 33 1 6.7459 3.6438 -0.5402 34 1 7.2623 4.4676 0.9507 35 1 5.9664 3.2490 1.0106 36 1 7.0485 1.3189 -1.0205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240857997.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:04 Heat of formation + Delta-G solvation = 50.123465 kcal Electronic energy + Delta-G solvation = -20784.223193 eV Core-core repulsion = 17655.694076 eV Total energy + Delta-G solvation = -3128.529117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94156 -40.62442 -38.44157 -35.62331 -34.70187 -32.66358 -32.13744 -30.57129 -29.81009 -28.10150 -27.21556 -26.14951 -23.80283 -23.43079 -21.19678 -20.28265 -19.26640 -18.44547 -17.90247 -17.01073 -16.62919 -16.44995 -16.24163 -15.75014 -15.07546 -14.70147 -14.43031 -14.26353 -14.12673 -13.92084 -13.86142 -13.53118 -13.11149 -12.98544 -12.96835 -12.85124 -12.76365 -12.42168 -12.11934 -12.03020 -11.68768 -11.45571 -11.21684 -10.21128 -10.10942 -9.71475 -9.46588 -8.75797 -8.43687 -6.36347 0.20640 0.91863 1.35460 1.43095 1.53314 1.56467 1.71353 1.97995 2.24389 2.78268 2.84356 3.56923 3.73866 3.79757 4.14089 4.31964 4.34147 4.45119 4.49325 4.52295 4.63560 4.68581 4.74897 4.76973 4.90103 4.90601 4.93853 5.12926 5.15591 5.25886 5.34250 5.49779 5.59322 5.91092 5.94520 6.14125 6.31129 6.35160 6.79125 6.90068 7.08681 7.94052 8.41220 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.007235 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.412554 B = 3869.187131 C = 5598.747603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.331 6.331 3 C -0.029 4.029 4 C -0.146 4.146 5 C -0.236 4.236 6 C 0.133 3.867 7 C 0.136 3.864 8 C -0.271 4.271 9 C 0.061 3.939 10 C -0.062 4.062 11 N -0.337 5.337 12 N -0.364 5.364 13 C 0.131 3.869 14 N -0.480 5.480 15 C 0.224 3.776 16 C -0.452 4.452 17 H 0.084 0.916 18 C 0.039 3.961 19 N -0.759 5.759 20 Si 0.980 3.020 21 H -0.261 1.261 22 H -0.268 1.268 23 H -0.265 1.265 24 H 0.114 0.886 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.147 0.853 28 H 0.136 0.864 29 H 0.169 0.831 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 4.804 1.020 7.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C -0.079 4.079 4 C -0.170 4.170 5 C -0.261 4.261 6 C -0.008 4.008 7 C 0.007 3.993 8 C -0.301 4.301 9 C -0.103 4.103 10 C -0.120 4.120 11 N -0.162 5.162 12 N -0.145 5.145 13 C -0.010 4.010 14 N -0.196 5.196 15 C 0.096 3.904 16 C -0.485 4.485 17 H 0.102 0.898 18 C -0.182 4.182 19 N -0.382 5.382 20 Si 0.801 3.199 21 H -0.185 1.185 22 H -0.193 1.193 23 H -0.190 1.190 24 H 0.132 0.868 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.186 0.814 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.559 4.748 1.128 5.510 hybrid contribution -1.386 -0.926 -0.133 1.672 sum -3.945 3.822 0.995 5.582 Atomic orbital electron populations 1.23163 0.78250 1.04572 1.01226 1.85901 1.21822 1.27004 1.89684 1.20484 0.93478 0.84858 1.09068 1.21280 0.99871 0.91319 1.04505 1.21263 0.92646 0.98191 1.13970 1.19281 0.90782 0.90170 1.00599 1.20168 0.84321 0.94097 1.00743 1.21702 1.01403 0.89107 1.17863 1.22816 0.89752 0.98917 0.98815 1.20277 1.03828 0.83937 1.03975 1.77061 1.24499 0.87007 1.27655 1.48921 1.06151 1.05219 1.54226 1.21827 0.89588 0.86598 1.02994 1.68674 1.36448 0.96045 1.18480 1.18424 0.86887 0.92139 0.92967 1.19602 0.94412 0.93534 1.40906 0.89781 1.26701 0.99189 0.99956 0.92364 1.70062 1.14145 1.27770 1.26232 0.85190 0.77806 0.78060 0.78844 1.18460 1.19287 1.18988 0.86807 0.92647 0.92804 0.83549 0.84586 0.81404 0.89162 0.90735 0.88380 0.90977 0.90216 0.89759 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.83 113.37 1.11 1.78 16 2 O -0.33 -14.29 9.67 -88.16 -0.85 -15.15 16 3 C -0.03 -1.41 6.74 23.27 0.16 -1.25 16 4 C -0.15 -6.02 9.11 22.49 0.20 -5.82 16 5 C -0.24 -10.01 9.61 22.77 0.22 -9.79 16 6 C 0.13 6.44 6.73 42.08 0.28 6.72 16 7 C 0.14 6.11 6.91 40.84 0.28 6.40 16 8 C -0.27 -10.09 10.14 22.44 0.23 -9.87 16 9 C 0.06 2.12 7.18 42.98 0.31 2.43 16 10 C -0.06 -1.39 10.44 71.24 0.74 -0.65 16 11 N -0.34 -13.91 12.55 -47.63 -0.60 -14.51 16 12 N -0.36 -16.38 4.06 -356.07 -1.44 -17.82 16 13 C 0.13 5.65 9.95 127.77 1.27 6.92 16 14 N -0.48 -25.60 5.74 -178.05 -1.02 -26.62 16 15 C 0.22 12.13 6.46 40.33 0.26 12.39 16 16 C -0.45 -24.13 8.87 23.37 0.21 -23.93 16 17 H 0.08 4.43 7.43 -2.91 -0.02 4.40 16 18 C 0.04 1.93 5.43 85.28 0.46 2.40 16 19 N -0.76 -38.09 9.85 21.83 0.22 -37.88 16 20 Si 0.98 37.51 29.57 68.60 2.03 39.54 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 24 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 26 H 0.05 1.43 7.69 -2.39 -0.02 1.42 16 27 H 0.15 4.80 6.43 -2.91 -0.02 4.78 16 28 H 0.14 4.80 7.07 -2.91 -0.02 4.78 16 29 H 0.17 5.16 7.36 -2.91 -0.02 5.13 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 3.25 7.15 -2.38 -0.02 3.23 16 34 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.08 4.03 6.52 -2.39 -0.02 4.01 16 36 H 0.28 12.77 8.30 -92.71 -0.77 12.00 16 Total: -1.00 -65.63 306.48 5.17 -60.45 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 1.10 Total: 24.25 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 5.74 Total: -12.27 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -2.85 Total: -96.83 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.85 Total: -15.15 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -65.63 5.17 -60.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240857997.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.577 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds