Wall clock time and date at job start Mon Mar 30 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99843 * 2 1 4 4 N 1.46500 * 109.46641 * 180.02562 * 3 2 1 5 5 C 1.34611 * 125.80777 * 0.02562 * 4 3 2 6 6 C 1.37913 * 107.39736 * 180.02562 * 5 4 3 7 7 C 1.47896 * 126.37827 * 179.97438 * 6 5 4 8 8 C 1.39965 * 119.45764 * 180.02562 * 7 6 5 9 9 C 1.36540 * 119.46883 * 180.02562 * 8 7 6 10 10 C 1.41336 * 118.42418 * 359.97438 * 9 8 7 11 11 C 1.41062 * 120.54586 * 179.72382 * 10 9 8 12 12 H 1.07999 * 119.99409 * 149.94308 * 11 10 9 13 13 C 1.39952 * 120.00219 * 329.94379 * 11 10 9 14 14 N 1.30845 * 119.99917 * 162.13688 * 13 11 10 15 15 Si 1.86805 * 120.00207 * 342.13704 * 13 11 10 16 16 H 1.48497 * 109.47028 * 95.38109 * 15 13 11 17 17 H 1.48496 * 109.46922 * 215.38276 * 15 13 11 18 18 H 1.48502 * 109.46847 * 335.38348 * 15 13 11 19 19 C 1.40909 * 118.90380 * 0.02562 * 10 9 8 20 20 C 1.50695 * 119.79610 * 179.97438 * 19 10 9 21 21 N 1.31299 * 120.39973 * 359.97438 * 19 10 9 22 22 C 1.41135 * 107.24054 * 0.26868 * 6 5 4 23 23 N 1.30522 * 108.10507 * 359.54902 * 22 6 5 24 24 H 1.09007 * 109.47162 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47173 * 299.99292 * 1 2 3 26 26 H 1.08997 * 109.47617 * 59.99730 * 1 2 3 27 27 H 1.08996 * 109.46787 * 60.00787 * 3 2 1 28 28 H 1.08995 * 109.47176 * 299.99859 * 3 2 1 29 29 H 1.08002 * 126.30179 * 0.04228 * 5 4 3 30 30 H 1.07996 * 120.26200 * 359.97414 * 8 7 6 31 31 H 1.08006 * 120.78790 * 179.97438 * 9 8 7 32 32 H 0.97002 * 120.00096 * 179.97438 * 14 13 11 33 33 H 1.09007 * 109.47177 * 90.00226 * 20 19 10 34 34 H 1.09000 * 109.47217 * 209.99486 * 20 19 10 35 35 H 1.08997 * 109.47644 * 330.00064 * 20 19 10 36 36 H 1.08004 * 125.94439 * 179.70040 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 7 3.4706 1.1897 -0.0006 5 6 4.1694 0.0392 -0.0016 6 6 5.5083 0.3700 -0.0013 7 6 6.6455 -0.5756 -0.0016 8 6 7.9539 -0.0786 -0.0007 9 6 9.0039 -0.9513 -0.0014 10 6 8.7268 -2.3372 -0.0026 11 6 9.7775 -3.2785 -0.0093 12 1 9.6417 -4.2425 0.4581 13 6 10.9958 -2.9629 -0.6216 14 7 12.0684 -3.6577 -0.3407 15 14 11.0906 -1.5499 -1.8398 16 1 11.5399 -0.3207 -1.1381 17 1 12.0575 -1.8875 -2.9151 18 1 9.7498 -1.3183 -2.4345 19 6 7.3836 -2.7632 -0.0035 20 6 7.0652 -4.2361 -0.0053 21 7 6.4080 -1.8846 -0.0027 22 6 5.5910 1.7789 0.0062 23 7 4.3764 2.2566 0.0004 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8462 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 3.7574 -0.9592 -0.0027 30 1 8.1315 0.9867 -0.0002 31 1 10.0222 -0.5911 -0.0012 32 1 12.9127 -3.4392 -0.7654 33 1 6.9881 -4.5925 1.0220 34 1 6.1186 -4.4026 -0.5195 35 1 7.8584 -4.7788 -0.5195 36 1 6.5011 2.3605 0.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245219834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:32 Heat of formation + Delta-G solvation = 60.726949 kcal Electronic energy + Delta-G solvation = -19960.036625 eV Core-core repulsion = 16831.967310 eV Total energy + Delta-G solvation = -3128.069315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74001 -38.63246 -38.11119 -34.12071 -32.69877 -31.64372 -31.48830 -29.29506 -27.50803 -27.08061 -25.91765 -24.17361 -22.02670 -21.33933 -20.03706 -19.67720 -17.52137 -17.28109 -16.62854 -16.53500 -15.66725 -14.90587 -14.74748 -14.47400 -14.18228 -13.58757 -13.38142 -13.27271 -12.82392 -12.63428 -12.38152 -12.00888 -11.90424 -11.73457 -11.60205 -11.28196 -11.10401 -10.78276 -10.54401 -10.36821 -10.24206 -9.85570 -9.51850 -9.11200 -8.59240 -8.33548 -8.11688 -7.12370 -7.07024 -4.51917 2.01177 2.23132 2.38705 2.66704 3.00438 3.13126 3.23213 3.51385 3.63362 3.88903 4.58536 4.67322 4.83233 4.86561 4.99946 5.10435 5.27679 5.34354 5.41847 5.60266 5.92872 6.02383 6.07578 6.24017 6.44907 6.49794 6.61214 6.63901 6.74882 6.81668 6.94659 6.98805 7.27025 7.30352 7.53597 7.63201 7.82805 8.05829 8.19424 8.44890 8.62928 9.48034 9.91854 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.030292 B = 0.004325 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.113566 B = 6472.537041 C = 7170.265687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.397 6.397 3 C 0.323 3.677 4 N -0.388 5.388 5 C 0.081 3.919 6 C -0.150 4.150 7 C 0.056 3.944 8 C -0.112 4.112 9 C -0.207 4.207 10 C 0.046 3.954 11 C -0.424 4.424 12 H 0.099 0.901 13 C 0.083 3.917 14 N -0.797 5.797 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.288 1.288 18 H -0.244 1.244 19 C 0.031 3.969 20 C -0.074 4.074 21 N -0.452 5.452 22 C 0.060 3.940 23 N -0.306 5.306 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.179 0.821 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.288 0.712 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 6.923 -0.732 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.314 6.314 3 C 0.162 3.838 4 N -0.172 5.172 5 C -0.065 4.065 6 C -0.161 4.161 7 C -0.078 4.078 8 C -0.132 4.132 9 C -0.231 4.231 10 C 0.041 3.959 11 C -0.453 4.453 12 H 0.117 0.883 13 C -0.137 4.137 14 N -0.420 5.420 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.167 1.167 19 C -0.114 4.114 20 C -0.132 4.132 21 N -0.161 5.161 22 C -0.127 4.127 23 N -0.128 5.128 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.196 0.804 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.060 7.436 -0.744 17.714 hybrid contribution 1.549 0.401 -0.446 1.661 sum -14.512 7.837 -1.191 16.535 Atomic orbital electron populations 1.22769 0.78205 1.03895 1.00558 1.87774 1.21401 1.26696 1.95573 1.21815 0.75711 0.84846 1.01455 1.48126 1.04918 1.05056 1.59106 1.22788 0.91300 0.91831 1.00544 1.18943 0.91656 0.91769 1.13750 1.18014 0.89152 0.88607 1.12073 1.21074 0.93088 0.98542 1.00497 1.21008 0.97646 0.93695 1.10788 1.18463 0.93719 0.92355 0.91411 1.19458 0.93929 1.02228 1.29665 0.88342 1.26228 0.94342 0.96769 0.96394 1.69692 1.00388 1.37083 1.34836 0.86322 0.79999 0.80270 0.79882 1.19393 1.21489 1.16719 1.21008 0.88400 0.94479 1.07553 1.20301 1.00876 0.91226 1.00767 1.66819 1.37196 1.01731 1.10340 1.23921 0.95272 0.93904 0.99605 1.77002 0.98724 1.09893 1.27218 0.88455 0.93332 0.93342 0.90955 0.90978 0.80355 0.87884 0.87366 0.90152 0.93004 0.93003 0.91045 0.79851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 11.01 101.05 1.11 1.40 16 2 O -0.40 -4.56 9.83 -35.23 -0.35 -4.91 16 3 C 0.32 3.73 7.65 59.85 0.46 4.19 16 4 N -0.39 -6.28 3.99 -65.55 -0.26 -6.54 16 5 C 0.08 1.48 10.63 -16.45 -0.17 1.31 16 6 C -0.15 -2.96 6.10 -104.96 -0.64 -3.60 16 7 C 0.06 1.27 6.76 -82.74 -0.56 0.71 16 8 C -0.11 -2.46 9.54 -39.55 -0.38 -2.84 16 9 C -0.21 -4.93 7.20 -39.02 -0.28 -5.22 16 10 C 0.05 1.14 5.11 -106.64 -0.54 0.60 16 11 C -0.42 -10.93 8.53 -37.87 -0.32 -11.26 16 12 H 0.10 2.60 7.23 -52.49 -0.38 2.22 16 13 C 0.08 2.09 5.42 -17.33 -0.09 2.00 16 14 N -0.80 -20.28 13.93 55.55 0.77 -19.50 16 15 Si 0.91 20.15 24.53 -169.99 -4.17 15.98 16 16 H -0.27 -5.73 6.71 56.52 0.38 -5.35 16 17 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.24 -5.67 6.85 56.52 0.39 -5.28 16 19 C 0.03 0.75 6.86 -81.81 -0.56 0.19 16 20 C -0.07 -1.52 9.59 36.00 0.35 -1.17 16 21 N -0.45 -10.70 9.96 -5.40 -0.05 -10.76 16 22 C 0.06 1.03 11.40 -17.01 -0.19 0.84 16 23 N -0.31 -5.24 12.51 30.84 0.39 -4.85 16 24 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 25 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.18 3.20 7.77 -52.49 -0.41 2.79 16 30 H 0.10 1.92 7.00 -52.49 -0.37 1.56 16 31 H 0.11 2.52 4.84 -52.48 -0.25 2.26 16 32 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.45 6.84 -51.93 -0.36 1.10 16 36 H 0.18 2.65 7.31 -52.48 -0.38 2.27 16 LS Contribution 307.47 15.07 4.63 4.63 Total: -1.00 -30.05 307.47 -5.15 -35.20 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.28 Total: 3.59 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.83 Total: -12.85 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.84 Total: -41.65 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.35 Total: -4.91 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.17 Total: 15.98 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.05 -5.15 -35.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245219834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.931 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds