Wall clock time and date at job start Mon Mar 30 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99843 * 2 1 4 4 N 1.46500 * 109.46641 * 180.02562 * 3 2 1 5 5 C 1.34611 * 125.80777 * 0.02562 * 4 3 2 6 6 C 1.37913 * 107.39736 * 180.02562 * 5 4 3 7 7 C 1.47896 * 126.37827 * 179.97438 * 6 5 4 8 8 C 1.39965 * 119.45764 * 180.02562 * 7 6 5 9 9 C 1.36540 * 119.46883 * 180.02562 * 8 7 6 10 10 C 1.41336 * 118.42418 * 359.97438 * 9 8 7 11 11 C 1.41062 * 120.54586 * 179.72382 * 10 9 8 12 12 H 1.07999 * 119.99409 * 149.94308 * 11 10 9 13 13 C 1.39952 * 120.00219 * 329.94379 * 11 10 9 14 14 N 1.30845 * 119.99917 * 162.13688 * 13 11 10 15 15 Si 1.86805 * 120.00207 * 342.13704 * 13 11 10 16 16 H 1.48497 * 109.47028 * 95.38109 * 15 13 11 17 17 H 1.48496 * 109.46922 * 215.38276 * 15 13 11 18 18 H 1.48502 * 109.46847 * 335.38348 * 15 13 11 19 19 C 1.40909 * 118.90380 * 0.02562 * 10 9 8 20 20 C 1.50695 * 119.79610 * 179.97438 * 19 10 9 21 21 N 1.31299 * 120.39973 * 359.97438 * 19 10 9 22 22 C 1.41135 * 107.24054 * 0.26868 * 6 5 4 23 23 N 1.30522 * 108.10507 * 359.54902 * 22 6 5 24 24 H 1.09007 * 109.47162 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47173 * 299.99292 * 1 2 3 26 26 H 1.08997 * 109.47617 * 59.99730 * 1 2 3 27 27 H 1.08996 * 109.46787 * 60.00787 * 3 2 1 28 28 H 1.08995 * 109.47176 * 299.99859 * 3 2 1 29 29 H 1.08002 * 126.30179 * 0.04228 * 5 4 3 30 30 H 1.07996 * 120.26200 * 359.97414 * 8 7 6 31 31 H 1.08006 * 120.78790 * 179.97438 * 9 8 7 32 32 H 0.97002 * 120.00096 * 179.97438 * 14 13 11 33 33 H 1.09007 * 109.47177 * 90.00226 * 20 19 10 34 34 H 1.09000 * 109.47217 * 209.99486 * 20 19 10 35 35 H 1.08997 * 109.47644 * 330.00064 * 20 19 10 36 36 H 1.08004 * 125.94439 * 179.70040 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 7 3.4706 1.1897 -0.0006 5 6 4.1694 0.0392 -0.0016 6 6 5.5083 0.3700 -0.0013 7 6 6.6455 -0.5756 -0.0016 8 6 7.9539 -0.0786 -0.0007 9 6 9.0039 -0.9513 -0.0014 10 6 8.7268 -2.3372 -0.0026 11 6 9.7775 -3.2785 -0.0093 12 1 9.6417 -4.2425 0.4581 13 6 10.9958 -2.9629 -0.6216 14 7 12.0684 -3.6577 -0.3407 15 14 11.0906 -1.5499 -1.8398 16 1 11.5399 -0.3207 -1.1381 17 1 12.0575 -1.8875 -2.9151 18 1 9.7498 -1.3183 -2.4345 19 6 7.3836 -2.7632 -0.0035 20 6 7.0652 -4.2361 -0.0053 21 7 6.4080 -1.8846 -0.0027 22 6 5.5910 1.7789 0.0062 23 7 4.3764 2.2566 0.0004 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8462 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 3.7574 -0.9592 -0.0027 30 1 8.1315 0.9867 -0.0002 31 1 10.0222 -0.5911 -0.0012 32 1 12.9127 -3.4392 -0.7654 33 1 6.9881 -4.5925 1.0220 34 1 6.1186 -4.4026 -0.5195 35 1 7.8584 -4.7788 -0.5195 36 1 6.5011 2.3605 0.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245219834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:32 Heat of formation + Delta-G solvation = 40.181544 kcal Electronic energy + Delta-G solvation = -19960.927541 eV Core-core repulsion = 16831.967310 eV Total energy + Delta-G solvation = -3128.960231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07901 -40.36773 -38.96761 -35.93904 -34.19644 -33.33438 -33.01955 -30.78421 -28.91241 -28.28798 -27.04636 -25.60920 -23.75776 -22.89124 -21.47027 -21.17541 -19.35619 -18.55807 -17.58296 -17.47487 -17.21370 -16.68504 -16.11367 -15.57964 -15.57313 -15.11392 -14.99316 -14.67144 -14.46476 -13.84450 -13.65939 -13.55352 -13.44245 -13.37372 -12.94927 -12.79210 -12.55436 -12.45561 -12.12335 -11.85848 -11.61485 -11.35304 -11.12814 -10.38429 -10.28193 -10.02467 -9.92451 -8.93934 -8.77296 -6.42189 0.36838 0.81896 0.98001 1.19943 1.25373 1.37273 1.47421 1.91782 2.10820 2.74600 2.75543 3.59354 3.71150 3.77221 3.95724 4.07302 4.13972 4.30469 4.38963 4.44799 4.52116 4.59688 4.62054 4.79064 4.84098 4.97308 5.01783 5.04950 5.07898 5.22558 5.44152 5.57973 5.63600 5.80729 5.89917 6.01108 6.04032 6.28502 6.59866 6.73814 6.75193 7.66169 8.12184 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.030292 B = 0.004325 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.113566 B = 6472.537041 C = 7170.265687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.424 6.424 3 C 0.313 3.687 4 N -0.383 5.383 5 C 0.090 3.910 6 C -0.188 4.188 7 C 0.067 3.933 8 C -0.120 4.120 9 C -0.213 4.213 10 C 0.024 3.976 11 C -0.454 4.454 12 H 0.074 0.926 13 C 0.053 3.947 14 N -0.834 5.834 15 Si 0.957 3.043 16 H -0.252 1.252 17 H -0.274 1.274 18 H -0.262 1.262 19 C 0.015 3.985 20 C -0.068 4.068 21 N -0.468 5.468 22 C 0.065 3.935 23 N -0.308 5.308 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.177 0.823 30 H 0.141 0.859 31 H 0.113 0.887 32 H 0.297 0.703 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.697 9.349 -1.125 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.343 6.343 3 C 0.154 3.846 4 N -0.166 5.166 5 C -0.058 4.058 6 C -0.200 4.200 7 C -0.069 4.069 8 C -0.140 4.140 9 C -0.238 4.238 10 C 0.020 3.980 11 C -0.483 4.483 12 H 0.093 0.907 13 C -0.164 4.164 14 N -0.459 5.459 15 Si 0.781 3.219 16 H -0.177 1.177 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.129 4.129 20 C -0.126 4.126 21 N -0.177 5.177 22 C -0.121 4.121 23 N -0.131 5.131 24 H 0.123 0.877 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.194 0.806 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.086 9.857 -1.130 20.628 hybrid contribution 1.799 -0.239 -0.276 1.835 sum -16.287 9.618 -1.405 18.967 Atomic orbital electron populations 1.23037 0.75823 1.05007 1.02169 1.87748 1.23924 1.26717 1.95863 1.22252 0.73211 0.85529 1.03563 1.48548 1.06679 1.04088 1.57314 1.22795 0.91287 0.92560 0.99207 1.18964 0.91448 0.92561 1.16999 1.18616 0.90571 0.88766 1.08915 1.21444 0.92338 1.00343 0.99857 1.21215 0.98562 0.93557 1.10464 1.18635 0.94030 0.93030 0.92349 1.19371 0.95221 1.01880 1.31834 0.90749 1.26763 0.93830 0.98570 0.97214 1.69704 1.01031 1.38776 1.36379 0.85602 0.79137 0.78705 0.78495 1.17732 1.20079 1.18620 1.21481 0.88336 0.96007 1.07116 1.20281 1.01356 0.89479 1.01478 1.66933 1.37041 1.02404 1.11282 1.24285 0.96366 0.92905 0.98568 1.76984 0.98777 1.10188 1.27106 0.87698 0.91696 0.91715 0.88754 0.88792 0.80551 0.84158 0.86930 0.89271 0.92099 0.91399 0.91643 0.77247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -8.67 9.83 -148.98 -1.46 -10.14 16 3 C 0.31 6.25 7.65 127.77 0.98 7.23 16 4 N -0.38 -11.32 3.99 -461.76 -1.84 -13.16 16 5 C 0.09 3.10 10.63 84.19 0.90 4.00 16 6 C -0.19 -7.04 6.10 -20.09 -0.12 -7.16 16 7 C 0.07 2.95 6.76 41.94 0.28 3.23 16 8 C -0.12 -5.08 9.54 22.29 0.21 -4.86 16 9 C -0.21 -10.04 7.20 22.64 0.16 -9.88 16 10 C 0.02 1.24 5.11 -21.17 -0.11 1.13 16 11 C -0.45 -24.28 8.53 23.38 0.20 -24.08 16 12 H 0.07 4.18 7.23 -2.91 -0.02 4.16 16 13 C 0.05 2.72 5.42 85.26 0.46 3.18 16 14 N -0.83 -43.54 13.93 21.83 0.30 -43.24 16 15 Si 0.96 41.39 24.53 68.60 1.68 43.07 16 16 H -0.25 -10.17 6.71 99.48 0.67 -9.50 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.26 -11.99 6.85 99.48 0.68 -11.30 16 19 C 0.01 0.71 6.86 43.29 0.30 1.00 16 20 C -0.07 -2.85 9.59 71.23 0.68 -2.16 16 21 N -0.47 -21.92 9.96 -170.99 -1.70 -23.62 16 22 C 0.07 2.06 11.40 85.60 0.98 3.04 16 23 N -0.31 -9.57 12.51 -56.34 -0.70 -10.27 16 24 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.18 6.12 7.77 -2.91 -0.02 6.09 16 30 H 0.14 4.77 7.00 -2.91 -0.02 4.75 16 31 H 0.11 5.13 4.84 -2.91 -0.01 5.11 16 32 H 0.30 13.89 8.30 -92.71 -0.77 13.12 16 33 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.06 2.76 6.84 -2.39 -0.02 2.75 16 36 H 0.21 5.23 7.31 -2.91 -0.02 5.21 16 Total: -1.00 -64.99 307.47 3.47 -61.52 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.03 Total: 19.57 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 6.17 Total: -23.72 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -3.95 Total: -90.29 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -1.46 Total: -10.14 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.68 Total: 43.07 kcal Total: -64.99 3.47 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245219834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.700 kcal (2) G-P(sol) polarization free energy of solvation -64.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds