Wall clock time and date at job start Mon Mar 30 2020 01:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46692 * 2 1 4 4 C 1.38343 * 119.94575 * 270.01785 * 3 2 1 5 5 C 1.38291 * 120.24383 * 179.97438 * 4 3 2 6 6 C 1.38042 * 120.11968 * 0.04473 * 5 4 3 7 7 C 1.39300 * 119.88181 * 359.70848 * 6 5 4 8 8 C 1.48418 * 120.12427 * 180.27299 * 7 6 5 9 9 N 1.30758 * 126.41299 * 179.97438 * 8 7 6 10 10 O 1.21294 * 110.09687 * 179.86645 * 9 8 7 11 11 C 1.33669 * 110.02439 * 0.39432 * 10 9 8 12 12 C 1.50705 * 126.43477 * 179.71747 * 11 10 9 13 13 H 1.09005 * 109.46755 * 195.04256 * 12 11 10 14 14 N 1.46901 * 109.47218 * 315.04263 * 12 11 10 15 15 C 1.50700 * 109.47197 * 75.04707 * 12 11 10 16 16 H 1.08001 * 119.99700 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99798 * 179.97438 * 15 12 11 18 18 N 1.31505 * 120.00263 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99648 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47310 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46948 * 120.00081 * 19 17 15 22 22 H 1.48502 * 109.47236 * 239.99820 * 19 17 15 23 23 N 1.30968 * 107.12432 * 359.75355 * 11 10 9 24 24 C 1.38007 * 119.93647 * 90.00781 * 3 2 1 25 25 H 1.08996 * 109.47306 * 59.99751 * 1 2 3 26 26 H 1.09007 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47510 * 299.99651 * 1 2 3 28 28 H 1.09001 * 109.46783 * 240.00242 * 2 1 3 29 29 H 1.08996 * 109.47306 * 120.00249 * 2 1 3 30 30 H 1.07998 * 119.87355 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.94204 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.05721 * 179.97438 * 6 5 4 33 33 H 1.00893 * 110.99905 * 60.00319 * 14 12 11 34 34 H 1.00898 * 110.99616 * 183.95498 * 14 12 11 35 35 H 0.97000 * 120.00367 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.05837 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2620 2.0721 -1.1987 5 6 2.7224 3.3761 -1.2059 6 6 2.9560 4.0348 -0.0155 7 6 2.7215 3.3857 1.1945 8 6 2.9651 4.0908 2.4775 9 7 2.7869 3.6028 3.6775 10 8 3.0795 4.4324 4.5125 11 6 3.4747 5.5619 3.9168 12 6 3.9142 6.8294 4.6032 13 1 3.9193 7.6489 3.8844 14 7 2.9837 7.1425 5.6961 15 6 5.3012 6.6430 5.1623 16 1 5.8130 5.7007 5.0337 17 6 5.9167 7.6753 5.8378 18 7 5.2937 8.8229 5.9939 19 14 7.6357 7.4439 6.5313 20 1 8.1136 6.0722 6.2226 21 1 8.5543 8.4372 5.9190 22 1 7.6060 7.6388 8.0032 23 7 3.4074 5.3601 2.6245 24 6 2.2619 2.0701 1.1959 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0812 1.5601 -2.1323 31 1 2.8997 3.8800 -2.1446 32 1 3.3160 5.0531 -0.0223 33 1 2.9610 6.3975 6.3761 34 1 3.2195 8.0219 6.1309 35 1 5.7268 9.5493 6.4688 36 1 2.0816 1.5610 2.1312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:25 Heat of formation + Delta-G solvation = 72.322824 kcal Electronic energy + Delta-G solvation = -19857.268570 eV Core-core repulsion = 16729.702090 eV Total energy + Delta-G solvation = -3127.566481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.73243 -39.42164 -35.51012 -35.17097 -33.98554 -32.34015 -31.19317 -29.90610 -29.44963 -26.48059 -24.39072 -24.21718 -23.56503 -22.34234 -20.91039 -19.88905 -17.52210 -17.05148 -16.46914 -16.21522 -15.63995 -15.33855 -15.10335 -14.41788 -14.08629 -13.75735 -13.49551 -13.29180 -13.07161 -12.59452 -12.38628 -12.26420 -11.99594 -11.58204 -11.36649 -11.27546 -11.09173 -11.04414 -11.03599 -10.91829 -10.44417 -10.27282 -10.18663 -9.57153 -8.87606 -8.80704 -8.42100 -7.55580 -6.36167 -4.53087 0.92969 1.35704 2.10044 2.99240 3.12855 3.21932 3.27365 3.73351 3.88726 3.99007 4.19333 4.51783 4.67331 4.80956 4.95157 5.04837 5.07057 5.18140 5.34575 5.41311 5.47949 5.64228 5.71035 5.80829 5.93383 5.99453 6.06259 6.27985 6.35891 6.47616 6.50361 6.60833 6.69067 6.91856 7.14773 7.50593 7.64095 8.29908 8.58231 8.81144 8.89306 9.19661 10.64486 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.003697 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.366212 B = 7571.591636 C = 7726.315406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.082 4.082 7 C -0.001 4.001 8 C 0.194 3.806 9 N -0.398 5.398 10 O 0.074 5.926 11 C 0.255 3.745 12 C 0.295 3.705 13 H 0.087 0.913 14 N -0.848 5.848 15 C -0.557 4.557 16 H 0.062 0.938 17 C 0.074 3.926 18 N -0.887 5.887 19 Si 0.909 3.091 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 N -0.502 5.502 24 C -0.086 4.086 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.323 0.677 34 H 0.369 0.631 35 H 0.272 0.728 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -11.821 -10.649 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.127 4.127 5 C -0.139 4.139 6 C -0.102 4.102 7 C -0.003 4.003 8 C -0.076 4.076 9 N -0.109 5.109 10 O 0.017 5.983 11 C 0.035 3.965 12 C 0.183 3.817 13 H 0.105 0.895 14 N -0.382 5.382 15 C -0.598 4.598 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.525 5.525 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.235 5.235 24 C -0.106 4.106 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.132 0.868 34 H 0.188 0.812 35 H 0.082 0.918 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.881 -12.272 -11.379 18.095 hybrid contribution 1.935 0.112 1.114 2.235 sum -4.946 -12.160 -10.265 16.665 Atomic orbital electron populations 1.21759 0.94704 1.01634 1.02377 1.20522 0.96215 0.92372 1.02897 1.19762 1.00013 0.96497 0.92672 1.21107 0.99311 0.94922 0.97391 1.21069 1.00114 0.94850 0.97847 1.21275 0.97529 1.00593 0.90804 1.17383 1.01674 0.93018 0.88179 1.23841 1.00888 0.89702 0.93215 1.74749 1.21543 1.15097 0.99472 1.85217 1.60053 1.19285 1.33777 1.29887 0.88610 0.91304 0.86657 1.17795 0.89731 0.82756 0.91442 0.89526 1.59382 1.53679 1.09480 1.15613 1.21609 1.00361 1.00527 1.37259 0.92013 1.24947 0.98704 0.94360 0.95008 1.69714 1.38326 1.03364 1.41074 0.86253 0.82910 0.78597 0.78660 1.19557 1.20492 1.20521 1.71977 1.22149 1.13520 1.15857 1.21042 0.98057 0.93189 0.98327 0.92548 0.92424 0.92410 0.90966 0.90935 0.85950 0.85431 0.84565 0.86752 0.81238 0.91837 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.75 6.06 -27.88 -0.17 -0.92 16 3 C -0.09 -1.06 5.13 -104.67 -0.54 -1.60 16 4 C -0.11 -1.18 9.69 -39.52 -0.38 -1.57 16 5 C -0.12 -1.43 10.03 -39.63 -0.40 -1.83 16 6 C -0.08 -1.24 9.70 -39.26 -0.38 -1.62 16 7 C 0.00 -0.01 5.88 -104.89 -0.62 -0.63 16 8 C 0.19 4.02 7.80 -156.12 -1.22 2.80 16 9 N -0.40 -8.50 11.86 30.97 0.37 -8.13 16 10 O 0.07 1.65 11.27 18.04 0.20 1.85 16 11 C 0.25 5.93 7.24 -12.99 -0.09 5.83 16 12 C 0.30 7.18 3.25 -70.01 -0.23 6.96 16 13 H 0.09 2.26 8.14 -51.93 -0.42 1.84 16 14 N -0.85 -19.25 9.18 -6.65 -0.06 -19.32 16 15 C -0.56 -14.42 8.71 -34.44 -0.30 -14.72 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 17 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 18 N -0.89 -22.79 11.54 55.43 0.64 -22.15 16 19 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 N -0.50 -11.32 11.26 -9.88 -0.11 -11.43 16 24 C -0.09 -1.27 9.34 -39.25 -0.37 -1.64 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.14 2.10 7.88 -52.48 -0.41 1.68 16 33 H 0.32 6.99 8.96 -39.30 -0.35 6.64 16 34 H 0.37 8.69 7.08 -39.29 -0.28 8.42 16 35 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.13 1.88 7.87 -52.49 -0.41 1.47 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -27.11 316.77 -8.00 -35.11 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.37 Total: 12.28 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -4.42 Total: -8.00 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.83 Total: -61.03 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.20 Total: 1.85 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.11 -8.00 -35.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.431 kcal (2) G-P(sol) polarization free energy of solvation -27.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds