Wall clock time and date at job start Mon Mar 30 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46692 * 2 1 4 4 C 1.38343 * 119.94575 * 270.01785 * 3 2 1 5 5 C 1.38291 * 120.24383 * 179.97438 * 4 3 2 6 6 C 1.38042 * 120.11968 * 0.04473 * 5 4 3 7 7 C 1.39300 * 119.88181 * 359.70848 * 6 5 4 8 8 C 1.48418 * 120.12427 * 180.27299 * 7 6 5 9 9 N 1.30758 * 126.41299 * 179.97438 * 8 7 6 10 10 O 1.21294 * 110.09687 * 179.86645 * 9 8 7 11 11 C 1.33669 * 110.02439 * 0.39432 * 10 9 8 12 12 C 1.50705 * 126.43477 * 179.71747 * 11 10 9 13 13 H 1.09005 * 109.46755 * 195.04256 * 12 11 10 14 14 N 1.46901 * 109.47218 * 315.04263 * 12 11 10 15 15 C 1.50700 * 109.47197 * 75.04707 * 12 11 10 16 16 H 1.08001 * 119.99700 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99798 * 179.97438 * 15 12 11 18 18 N 1.31505 * 120.00263 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99648 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47310 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46948 * 120.00081 * 19 17 15 22 22 H 1.48502 * 109.47236 * 239.99820 * 19 17 15 23 23 N 1.30968 * 107.12432 * 359.75355 * 11 10 9 24 24 C 1.38007 * 119.93647 * 90.00781 * 3 2 1 25 25 H 1.08996 * 109.47306 * 59.99751 * 1 2 3 26 26 H 1.09007 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47510 * 299.99651 * 1 2 3 28 28 H 1.09001 * 109.46783 * 240.00242 * 2 1 3 29 29 H 1.08996 * 109.47306 * 120.00249 * 2 1 3 30 30 H 1.07998 * 119.87355 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.94204 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.05721 * 179.97438 * 6 5 4 33 33 H 1.00893 * 110.99905 * 60.00319 * 14 12 11 34 34 H 1.00898 * 110.99616 * 183.95498 * 14 12 11 35 35 H 0.97000 * 120.00367 * 180.02562 * 18 17 15 36 36 H 1.08002 * 120.05837 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2620 2.0721 -1.1987 5 6 2.7224 3.3761 -1.2059 6 6 2.9560 4.0348 -0.0155 7 6 2.7215 3.3857 1.1945 8 6 2.9651 4.0908 2.4775 9 7 2.7869 3.6028 3.6775 10 8 3.0795 4.4324 4.5125 11 6 3.4747 5.5619 3.9168 12 6 3.9142 6.8294 4.6032 13 1 3.9193 7.6489 3.8844 14 7 2.9837 7.1425 5.6961 15 6 5.3012 6.6430 5.1623 16 1 5.8130 5.7007 5.0337 17 6 5.9167 7.6753 5.8378 18 7 5.2937 8.8229 5.9939 19 14 7.6357 7.4439 6.5313 20 1 8.1136 6.0722 6.2226 21 1 8.5543 8.4372 5.9190 22 1 7.6060 7.6388 8.0032 23 7 3.4074 5.3601 2.6245 24 6 2.2619 2.0701 1.1959 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0812 1.5601 -2.1323 31 1 2.8997 3.8800 -2.1446 32 1 3.3160 5.0531 -0.0223 33 1 2.9610 6.3975 6.3761 34 1 3.2195 8.0219 6.1309 35 1 5.7268 9.5493 6.4688 36 1 2.0816 1.5610 2.1312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:24 Heat of formation + Delta-G solvation = 54.969023 kcal Electronic energy + Delta-G solvation = -19858.021088 eV Core-core repulsion = 16729.702090 eV Total energy + Delta-G solvation = -3128.318998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.44104 -40.45524 -37.32256 -36.78653 -35.00553 -34.05467 -32.81292 -31.34196 -30.36132 -28.42303 -25.82955 -25.75670 -24.68007 -23.79130 -22.09245 -21.29489 -19.32410 -18.62418 -18.32929 -17.44680 -17.27168 -16.50549 -16.37610 -16.17562 -15.07135 -14.94830 -14.67476 -14.52628 -14.29629 -14.26876 -14.02861 -13.42573 -13.28654 -13.11740 -12.86959 -12.85075 -12.50150 -12.44940 -12.36717 -12.06279 -12.02387 -11.82473 -11.70248 -11.22361 -10.81978 -9.85760 -9.62254 -9.47158 -8.31292 -6.56652 -0.33677 0.33872 0.43624 1.37986 1.40996 1.46949 1.53170 1.94806 2.31443 2.53012 2.77006 2.89429 3.05821 3.75503 3.85942 4.02799 4.15236 4.27015 4.34990 4.42216 4.49441 4.54258 4.62329 4.70835 4.78858 4.91275 5.07983 5.08756 5.09978 5.18621 5.39091 5.42433 5.47530 5.48579 5.57918 5.67190 5.93065 6.35242 6.60762 6.91379 7.14914 7.20269 8.68562 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.003697 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.366212 B = 7571.591636 C = 7726.315406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.086 4.086 4 C -0.092 4.092 5 C -0.112 4.112 6 C -0.096 4.096 7 C -0.041 4.041 8 C 0.200 3.800 9 N -0.408 5.408 10 O 0.063 5.937 11 C 0.244 3.756 12 C 0.302 3.698 13 H 0.063 0.937 14 N -0.839 5.839 15 C -0.578 4.578 16 H 0.047 0.953 17 C 0.039 3.961 18 N -0.903 5.903 19 Si 0.970 3.030 20 H -0.277 1.277 21 H -0.274 1.274 22 H -0.269 1.269 23 N -0.515 5.515 24 C -0.095 4.095 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.123 0.877 33 H 0.329 0.671 34 H 0.365 0.635 35 H 0.278 0.722 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -13.430 -12.634 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.110 4.110 5 C -0.130 4.130 6 C -0.116 4.116 7 C -0.043 4.043 8 C -0.070 4.070 9 N -0.121 5.121 10 O 0.010 5.990 11 C 0.024 3.976 12 C 0.189 3.811 13 H 0.081 0.919 14 N -0.372 5.372 15 C -0.618 4.618 16 H 0.066 0.934 17 C -0.164 4.164 18 N -0.540 5.540 19 Si 0.795 3.205 20 H -0.202 1.202 21 H -0.199 1.199 22 H -0.194 1.194 23 N -0.249 5.249 24 C -0.116 4.116 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.182 0.818 31 H 0.179 0.821 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.183 0.817 35 H 0.087 0.913 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.882 -13.873 -13.336 20.437 hybrid contribution 1.867 0.539 1.582 2.505 sum -5.015 -13.334 -11.754 18.469 Atomic orbital electron populations 1.21755 0.94090 1.02660 1.01850 1.20608 0.96609 0.90506 1.04152 1.20139 0.98733 0.97795 0.91922 1.21610 0.96546 0.94327 0.98547 1.21440 0.98596 0.95275 0.97695 1.21331 0.98412 1.00407 0.91477 1.17594 1.05180 0.94308 0.87177 1.24551 0.98984 0.89008 0.94457 1.74715 1.22760 1.14880 0.99740 1.85188 1.60508 1.19155 1.34194 1.29666 0.89375 0.91469 0.87069 1.17500 0.89740 0.82593 0.91219 0.91898 1.59324 1.52983 1.09429 1.15438 1.21689 1.01239 1.00394 1.38490 0.93423 1.25621 1.01910 0.93973 0.94912 1.69773 1.39525 1.03743 1.40945 0.85320 0.78722 0.78054 0.78417 1.20232 1.19917 1.19400 1.71968 1.22569 1.14754 1.15577 1.21092 0.98581 0.92423 0.99458 0.91893 0.90683 0.94137 0.88362 0.91105 0.81780 0.82118 0.85881 0.86052 0.81720 0.91260 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.08 -1.22 6.06 29.85 0.18 -1.03 16 3 C -0.09 -1.82 5.13 -19.89 -0.10 -1.92 16 4 C -0.09 -1.62 9.69 22.31 0.22 -1.40 16 5 C -0.11 -2.32 10.03 22.24 0.22 -2.10 16 6 C -0.10 -2.85 9.70 22.48 0.22 -2.64 16 7 C -0.04 -1.42 5.88 -20.04 -0.12 -1.53 16 8 C 0.20 8.62 7.80 137.30 1.07 9.69 16 9 N -0.41 -18.11 11.86 -59.14 -0.70 -18.81 16 10 O 0.06 2.92 11.27 74.60 0.84 3.77 16 11 C 0.24 11.86 7.24 88.36 0.64 12.50 16 12 C 0.30 15.29 3.25 43.42 0.14 15.43 16 13 H 0.06 3.45 8.14 -2.38 -0.02 3.43 16 14 N -0.84 -39.17 9.18 -174.94 -1.61 -40.77 16 15 C -0.58 -30.73 8.71 25.60 0.22 -30.51 16 16 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 17 C 0.04 1.99 5.38 84.66 0.46 2.45 16 18 N -0.90 -46.54 11.54 21.44 0.25 -46.29 16 19 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 N -0.51 -24.25 11.26 -302.52 -3.41 -27.66 16 24 C -0.10 -2.78 9.34 22.48 0.21 -2.57 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 30 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.12 3.88 7.88 -2.91 -0.02 3.86 16 33 H 0.33 14.62 8.96 -89.70 -0.80 13.82 16 34 H 0.36 17.56 7.08 -89.70 -0.64 16.93 16 35 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 36 H 0.12 3.58 7.87 -2.91 -0.02 3.55 16 Total: -1.00 -59.92 316.77 1.15 -58.77 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.32 Total: 32.86 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 4.07 Total: -4.95 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -5.47 Total: -133.53 kcal Atomic # 8 Polarization: 2.92 SS G_CDS: 0.84 Total: 3.77 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -59.92 1.15 -58.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.736 kcal (2) G-P(sol) polarization free energy of solvation -59.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds