Wall clock time and date at job start Mon Mar 30 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38345 * 119.87571 * 2 1 4 4 C 1.38010 * 120.11597 * 180.27361 * 3 2 1 5 5 C 1.39344 * 119.87754 * 359.72484 * 4 3 2 6 6 C 1.48420 * 120.11716 * 179.97438 * 5 4 3 7 7 N 1.30766 * 126.41454 * 179.71692 * 6 5 4 8 8 O 1.21290 * 110.09831 * 179.80712 * 7 6 5 9 9 C 1.33669 * 110.02370 * 0.46195 * 8 7 6 10 10 C 1.50703 * 126.43221 * 179.68147 * 9 8 7 11 11 H 1.08999 * 109.46630 * 195.03766 * 10 9 8 12 12 N 1.46899 * 109.47312 * 315.03820 * 10 9 8 13 13 C 1.50704 * 109.47420 * 75.04094 * 10 9 8 14 14 H 1.08001 * 119.99588 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00093 * 179.97438 * 13 10 9 16 16 N 1.31520 * 119.99827 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00023 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46896 * 89.99937 * 17 15 13 19 19 H 1.48497 * 109.47366 * 210.00100 * 17 15 13 20 20 H 1.48496 * 109.46939 * 330.00488 * 17 15 13 21 21 N 1.30971 * 107.12553 * 359.71143 * 9 8 7 22 22 C 1.39307 * 119.76470 * 0.02562 * 5 4 3 23 23 C 1.38047 * 119.87459 * 359.97438 * 22 5 4 24 24 C 1.50703 * 119.93762 * 180.02562 * 23 22 5 25 25 H 1.09001 * 109.46977 * 270.27434 * 1 2 3 26 26 H 1.09001 * 109.47227 * 30.27452 * 1 2 3 27 27 H 1.09005 * 109.46999 * 150.27209 * 1 2 3 28 28 H 1.07991 * 119.94339 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.05918 * 179.74926 * 4 3 2 30 30 H 1.00901 * 110.99652 * 60.00093 * 12 10 9 31 31 H 1.00895 * 110.99860 * 183.95803 * 12 10 9 32 32 H 0.97000 * 119.99395 * 180.02562 * 16 15 13 33 33 H 1.07994 * 120.06203 * 179.97438 * 22 5 4 34 34 H 1.09002 * 109.47152 * 90.00110 * 24 23 22 35 35 H 1.09001 * 109.46980 * 330.00211 * 24 23 22 36 36 H 1.09004 * 109.47113 * 210.00192 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1996 0.0000 4 6 3.5762 1.2054 -0.0057 5 6 4.2754 0.0001 -0.0057 6 6 5.7596 0.0001 -0.0124 7 7 6.5359 -1.0522 -0.0079 8 8 7.6999 -0.7115 -0.0195 9 6 7.7863 0.6224 -0.0228 10 6 9.0541 1.4371 -0.0296 11 1 8.8242 2.4690 0.2357 12 7 9.9997 0.8796 0.9466 13 6 9.6697 1.3972 -1.4046 14 1 9.1909 0.8374 -2.1945 15 6 10.8440 2.0752 -1.6542 16 7 11.4272 2.7564 -0.6922 17 14 11.6073 2.0250 -3.3584 18 1 11.0764 3.1483 -4.1718 19 1 13.0825 2.1507 -3.2440 20 1 11.2696 0.7362 -4.0142 21 7 6.5623 1.0882 -0.0184 22 6 3.5764 -1.2049 -0.0004 23 6 2.1960 -1.1991 0.0053 24 6 1.4384 -2.5018 0.0116 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6532 2.1331 0.0004 29 1 4.1132 2.1424 -0.0098 30 1 10.2288 -0.0772 0.7223 31 1 10.8324 1.4460 1.0076 32 1 12.2532 3.2336 -0.8680 33 1 4.1135 -2.1419 -0.0008 34 1 1.2599 -2.8134 1.0407 35 1 2.0230 -3.2646 -0.5028 36 1 0.4842 -2.3697 -0.4987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248225982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:25 Heat of formation + Delta-G solvation = 56.460112 kcal Electronic energy + Delta-G solvation = -19892.379155 eV Core-core repulsion = 16764.124816 eV Total energy + Delta-G solvation = -3128.254339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.43764 -40.62179 -37.32463 -36.83993 -34.58377 -33.74873 -33.21198 -32.06290 -28.69159 -28.42006 -27.68919 -25.69381 -24.87832 -23.43080 -22.35203 -21.16299 -19.32196 -18.63108 -18.32296 -17.30804 -17.07554 -16.47312 -16.25930 -16.12953 -15.21939 -14.94852 -14.69976 -14.32074 -14.10710 -14.07275 -13.64108 -13.55913 -13.42441 -13.23701 -13.11155 -12.83947 -12.75670 -12.41943 -12.36075 -12.18030 -12.05251 -11.99987 -11.81532 -11.15875 -10.81063 -9.83065 -9.49223 -9.41559 -8.31146 -6.56597 -0.35416 0.32749 0.42616 1.39130 1.40594 1.45393 1.52171 1.95071 2.31469 2.53540 2.72296 2.89635 3.06064 3.79957 3.85815 3.94882 4.06429 4.24902 4.35232 4.40445 4.53327 4.72229 4.75920 4.77404 4.81886 4.83344 4.95053 4.98439 5.17691 5.18471 5.32784 5.40245 5.45881 5.48235 5.61548 5.67179 5.95378 6.35142 6.60672 6.91455 7.15261 7.20267 8.68519 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033160 B = 0.003692 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.200841 B = 7583.155111 C = 7725.702650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.068 4.068 3 C -0.117 4.117 4 C -0.092 4.092 5 C -0.047 4.047 6 C 0.201 3.799 7 N -0.408 5.408 8 O 0.062 5.938 9 C 0.244 3.756 10 C 0.302 3.698 11 H 0.063 0.937 12 N -0.839 5.839 13 C -0.579 4.579 14 H 0.048 0.952 15 C 0.039 3.961 16 N -0.903 5.903 17 Si 0.970 3.030 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.274 1.274 21 N -0.515 5.515 22 C -0.093 4.093 23 C -0.094 4.094 24 C -0.114 4.114 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.124 0.876 30 H 0.329 0.671 31 H 0.365 0.635 32 H 0.278 0.722 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.071 -5.748 0.986 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.135 4.135 4 C -0.112 4.112 5 C -0.049 4.049 6 C -0.069 4.069 7 N -0.121 5.121 8 O 0.010 5.990 9 C 0.024 3.976 10 C 0.190 3.810 11 H 0.081 0.919 12 N -0.372 5.372 13 C -0.619 4.619 14 H 0.066 0.934 15 C -0.164 4.164 16 N -0.540 5.540 17 Si 0.794 3.206 18 H -0.200 1.200 19 H -0.195 1.195 20 H -0.199 1.199 21 N -0.249 5.249 22 C -0.113 4.113 23 C -0.094 4.094 24 C -0.170 4.170 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.175 0.825 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.183 0.817 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.021 -5.990 1.615 20.960 hybrid contribution 1.996 0.213 -1.588 2.560 sum -18.025 -5.776 0.026 18.928 Atomic orbital electron populations 1.20992 0.87925 1.04489 1.03810 1.20378 0.98282 0.91700 0.96504 1.21292 0.92278 0.99554 1.00376 1.21278 0.95392 0.96532 0.97949 1.17563 0.83794 0.96182 1.07370 1.24526 0.97961 0.83946 1.00419 1.74712 0.89628 1.23798 1.24011 1.85186 1.22026 1.25534 1.66301 1.29665 0.97338 0.81113 0.89459 1.17493 0.80841 0.90519 0.92181 0.91927 1.59323 1.20726 1.07099 1.50011 1.21665 1.09512 1.34598 0.96117 0.93404 1.25627 0.96347 0.92988 1.01455 1.69776 1.19341 1.31114 1.33754 0.85373 0.77802 0.78523 0.78881 1.19991 1.19538 1.19897 1.71968 1.00011 1.29204 1.23755 1.21108 0.94804 0.96190 0.99219 1.20019 0.91970 0.97303 1.00111 1.20931 1.00467 0.91984 1.03586 0.89454 0.90048 0.89487 0.82467 0.85826 0.86050 0.81718 0.91258 0.85965 0.89808 0.91504 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.59 71.24 0.68 -0.57 16 2 C -0.07 -1.32 5.88 -19.83 -0.12 -1.44 16 3 C -0.12 -2.63 9.69 22.24 0.22 -2.41 16 4 C -0.09 -2.81 9.70 22.48 0.22 -2.60 16 5 C -0.05 -1.68 5.88 -20.04 -0.12 -1.80 16 6 C 0.20 8.77 7.80 137.30 1.07 9.84 16 7 N -0.41 -18.24 11.86 -59.13 -0.70 -18.94 16 8 O 0.06 2.93 11.27 74.61 0.84 3.78 16 9 C 0.24 11.92 7.24 88.36 0.64 12.56 16 10 C 0.30 15.36 3.25 43.43 0.14 15.50 16 11 H 0.06 3.45 8.14 -2.39 -0.02 3.43 16 12 N -0.84 -39.31 9.18 -174.95 -1.61 -40.91 16 13 C -0.58 -30.87 8.71 25.60 0.22 -30.64 16 14 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 15 C 0.04 2.00 5.38 84.65 0.46 2.45 16 16 N -0.90 -46.69 11.54 21.45 0.25 -46.44 16 17 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 N -0.52 -24.48 11.26 -302.50 -3.41 -27.89 16 22 C -0.09 -2.78 9.34 22.48 0.21 -2.57 16 23 C -0.09 -2.08 5.88 -19.90 -0.12 -2.20 16 24 C -0.11 -1.65 9.60 71.24 0.68 -0.96 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 0.70 8.09 -2.39 -0.02 0.69 16 27 H 0.09 0.70 5.93 -2.38 -0.01 0.69 16 28 H 0.16 2.51 8.06 -2.92 -0.02 2.49 16 29 H 0.12 4.01 7.88 -2.91 -0.02 3.99 16 30 H 0.33 14.68 8.96 -89.69 -0.80 13.88 16 31 H 0.36 17.62 7.08 -89.70 -0.63 16.98 16 32 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 33 H 0.12 3.69 7.87 -2.91 -0.02 3.67 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 36 H 0.09 0.93 5.92 -2.38 -0.01 0.92 16 Total: -1.00 -60.60 312.25 1.29 -59.31 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.31 Total: 32.76 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 4.19 Total: -4.82 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -5.47 Total: -134.19 kcal Atomic # 8 Polarization: 2.93 SS G_CDS: 0.84 Total: 3.78 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -60.60 1.29 -59.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.772 kcal (2) G-P(sol) polarization free energy of solvation -60.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds