Wall clock time and date at job start Mon Mar 30 2020 01:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 H 1.09002 * 109.47285 * 305.00387 * 3 2 1 5 5 C 1.50703 * 109.47306 * 184.99800 * 3 2 1 6 6 H 1.07992 * 120.00259 * 240.00245 * 5 3 2 7 7 C 1.37881 * 119.99732 * 59.99911 * 5 3 2 8 8 N 1.31515 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00153 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47138 * 120.00070 * 9 7 5 12 12 H 1.48492 * 109.47317 * 240.00486 * 9 7 5 13 13 N 1.46503 * 109.47336 * 64.99996 * 3 2 1 14 14 C 1.37578 * 120.08337 * 65.10523 * 13 3 2 15 15 N 1.31204 * 118.87466 * 0.02616 * 14 13 3 16 16 N 1.34175 * 122.24703 * 180.30169 * 14 13 3 17 17 C 1.31705 * 121.83007 * 359.42817 * 16 14 13 18 18 O 1.35028 * 120.49012 * 180.30427 * 17 16 14 19 19 C 1.46939 * 119.02018 * 0.55629 * 17 16 14 20 20 C 1.39530 * 121.63510 * 179.75409 * 19 17 16 21 21 C 1.37784 * 119.52628 * 179.97438 * 20 19 17 22 22 C 1.38735 * 120.49642 * 0.02562 * 21 20 19 23 23 C 1.37980 * 120.63839 * 359.95869 * 22 21 20 24 24 C 1.38393 * 120.08838 * 245.13192 * 13 3 2 25 25 H 1.08992 * 109.47183 * 60.00014 * 1 2 3 26 26 H 1.09007 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46979 * 299.99686 * 1 2 3 28 28 H 1.08992 * 109.47588 * 240.00327 * 2 1 3 29 29 H 1.09003 * 109.47612 * 119.99703 * 2 1 3 30 30 H 0.96998 * 119.99593 * 179.97438 * 8 7 5 31 31 H 0.97002 * 119.99916 * 179.97438 * 15 14 13 32 32 H 0.96695 * 114.00212 * 270.25818 * 18 17 16 33 33 H 1.07998 * 120.23710 * 359.94587 * 20 19 17 34 34 H 1.08009 * 119.74830 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.67920 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.13486 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8815 -1.3818 10 1 6.5987 1.5466 -0.1942 11 1 6.4971 -0.5172 -1.4630 12 1 6.3989 1.6170 -2.6102 13 7 1.6523 2.0976 1.2518 14 6 2.1686 1.6578 2.4488 15 7 3.0077 0.6492 2.4446 16 7 1.8390 2.2216 3.6209 17 6 1.0071 3.2402 3.6922 18 8 0.6990 3.7909 4.8860 19 6 0.4149 3.7649 2.4540 20 6 -0.4764 4.8383 2.4667 21 6 -1.0055 5.2957 1.2795 22 6 -0.6585 4.6969 0.0771 23 6 0.2218 3.6348 0.0487 24 6 0.7656 3.1599 1.2334 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0602 -2.9502 31 1 3.3819 0.3261 3.2792 32 1 -0.0666 3.3889 5.3187 33 1 -0.7501 5.3070 3.4004 34 1 -1.6961 6.1261 1.2852 35 1 -1.0815 5.0658 -0.8456 36 1 0.4866 3.1750 -0.8920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:16 Heat of formation + Delta-G solvation = 54.653729 kcal Electronic energy + Delta-G solvation = -21476.353946 eV Core-core repulsion = 18348.021276 eV Total energy + Delta-G solvation = -3128.332670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77700 -38.04434 -37.50414 -35.16591 -32.84233 -32.22577 -31.15515 -30.56760 -28.68180 -26.92942 -24.03151 -23.54613 -22.56461 -21.95244 -19.91886 -18.68233 -18.47997 -17.55201 -16.58194 -15.73132 -15.30634 -15.23053 -14.55176 -14.22322 -14.01780 -13.80214 -13.67396 -12.81339 -12.68713 -12.20925 -12.10651 -11.99273 -11.70455 -11.26404 -11.14821 -10.93452 -10.82222 -10.46568 -10.16404 -9.84514 -9.83226 -9.52309 -9.27430 -9.04039 -8.64179 -8.43914 -8.27674 -6.79898 -6.02966 -4.03621 0.68246 1.55104 1.97683 3.31628 3.37341 3.39824 3.47826 3.49743 3.63508 4.36154 4.47376 4.70705 4.83249 5.10120 5.28220 5.29299 5.51334 5.68685 5.73112 5.96450 6.15219 6.20582 6.21748 6.29936 6.44151 6.51057 6.60378 6.76446 6.87276 6.94392 7.14014 7.32575 7.40206 7.57539 7.80838 7.84988 8.08784 8.20488 8.43173 8.94928 9.23188 9.56960 11.02617 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.007078 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.033394 B = 3955.060496 C = 4412.035014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.274 3.726 4 H 0.055 0.945 5 C -0.485 4.485 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.499 5.499 14 C 0.542 3.458 15 N -0.683 5.683 16 N -0.559 5.559 17 C 0.437 3.563 18 O -0.477 6.477 19 C -0.222 4.222 20 C -0.031 4.031 21 C -0.186 4.186 22 C -0.047 4.047 23 C -0.175 4.175 24 C 0.249 3.751 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.261 0.739 31 H 0.334 0.666 32 H 0.407 0.593 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 7.589 6.721 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.174 3.826 4 H 0.073 0.927 5 C -0.523 4.523 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.538 5.538 9 Si 0.730 3.270 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.200 5.200 14 C 0.173 3.827 15 N -0.315 5.315 16 N -0.288 5.288 17 C 0.216 3.784 18 O -0.284 6.284 19 C -0.232 4.232 20 C -0.051 4.051 21 C -0.206 4.206 22 C -0.068 4.068 23 C -0.197 4.197 24 C 0.138 3.862 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.267 0.733 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.623 6.492 6.201 13.161 hybrid contribution 0.231 0.285 0.468 0.594 sum -9.392 6.778 6.668 13.365 Atomic orbital electron populations 1.21838 0.99612 0.99412 0.99438 1.21961 0.91142 0.99363 1.04844 1.19323 0.96228 0.89875 0.77135 0.92713 1.21098 0.89943 1.36791 1.04511 0.91902 1.24771 0.98366 0.95255 0.95546 1.69853 1.34783 1.39425 1.09734 0.86372 0.85362 0.77670 0.77582 1.19998 1.20999 1.21284 1.45326 1.37923 1.27793 1.08957 1.19323 0.92254 0.91916 0.79203 1.70549 1.14003 1.13894 1.33074 1.69151 1.18784 1.12643 1.28230 1.21122 0.87410 0.85531 0.84355 1.84509 1.53516 1.59009 1.31371 1.19238 1.07899 1.04475 0.91560 1.20895 0.92897 0.92717 0.98634 1.20877 1.04510 1.02968 0.92266 1.21153 0.94159 0.93316 0.98128 1.20909 1.01356 1.00237 0.97204 1.18083 0.88040 0.86665 0.93448 0.93842 0.94505 0.95330 0.87584 0.91581 0.92908 0.85030 0.73309 0.85146 0.85902 0.85480 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.80 37.16 0.36 -2.55 16 2 C -0.13 -3.20 5.18 -26.73 -0.14 -3.34 16 3 C 0.27 6.65 1.88 -69.08 -0.13 6.52 16 4 H 0.06 1.36 5.45 -51.93 -0.28 1.08 16 5 C -0.48 -13.28 7.31 -34.44 -0.25 -13.53 16 6 H 0.06 1.84 7.06 -52.49 -0.37 1.47 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.90 -24.74 11.29 55.43 0.63 -24.12 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.50 -10.99 2.11 -109.88 -0.23 -11.22 16 14 C 0.54 12.17 7.67 -323.44 -2.48 9.69 16 15 N -0.68 -16.14 9.98 29.67 0.30 -15.85 16 16 N -0.56 -11.11 10.38 -12.36 -0.13 -11.23 16 17 C 0.44 7.18 8.03 -14.08 -0.11 7.06 16 18 O -0.48 -5.82 12.99 -16.79 -0.22 -6.04 16 19 C -0.22 -3.59 5.88 -104.97 -0.62 -4.20 16 20 C -0.03 -0.38 9.68 -39.27 -0.38 -0.76 16 21 C -0.19 -2.13 10.02 -39.56 -0.40 -2.53 16 22 C -0.05 -0.61 10.02 -39.49 -0.40 -1.00 16 23 C -0.18 -2.90 9.34 -39.49 -0.37 -3.27 16 24 C 0.25 4.69 6.52 -83.80 -0.55 4.14 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.03 0.56 7.74 -51.93 -0.40 0.15 16 28 H 0.11 2.79 5.95 -51.93 -0.31 2.48 16 29 H 0.07 1.67 6.26 -51.93 -0.32 1.34 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.33 7.23 8.88 -40.82 -0.36 6.87 16 32 H 0.41 2.64 9.06 45.56 0.41 3.05 16 33 H 0.13 1.23 7.75 -52.49 -0.41 0.82 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.14 2.52 5.90 -52.48 -0.31 2.22 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -31.54 298.99 -8.90 -40.44 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.18 Total: 8.72 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -5.55 Total: -2.20 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.56 Total: -62.42 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.22 Total: -6.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.54 -8.90 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.099 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds