Wall clock time and date at job start Mon Mar 30 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46843 * 2 1 4 4 H 1.09002 * 109.47285 * 305.00387 * 3 2 1 5 5 C 1.50703 * 109.47306 * 184.99800 * 3 2 1 6 6 H 1.07992 * 120.00259 * 240.00245 * 5 3 2 7 7 C 1.37881 * 119.99732 * 59.99911 * 5 3 2 8 8 N 1.31515 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00153 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47138 * 120.00070 * 9 7 5 12 12 H 1.48492 * 109.47317 * 240.00486 * 9 7 5 13 13 N 1.46503 * 109.47336 * 64.99996 * 3 2 1 14 14 C 1.37578 * 120.08337 * 65.10523 * 13 3 2 15 15 N 1.31204 * 118.87466 * 0.02616 * 14 13 3 16 16 N 1.34175 * 122.24703 * 180.30169 * 14 13 3 17 17 C 1.31705 * 121.83007 * 359.42817 * 16 14 13 18 18 O 1.35028 * 120.49012 * 180.30427 * 17 16 14 19 19 C 1.46939 * 119.02018 * 0.55629 * 17 16 14 20 20 C 1.39530 * 121.63510 * 179.75409 * 19 17 16 21 21 C 1.37784 * 119.52628 * 179.97438 * 20 19 17 22 22 C 1.38735 * 120.49642 * 0.02562 * 21 20 19 23 23 C 1.37980 * 120.63839 * 359.95869 * 22 21 20 24 24 C 1.38393 * 120.08838 * 245.13192 * 13 3 2 25 25 H 1.08992 * 109.47183 * 60.00014 * 1 2 3 26 26 H 1.09007 * 109.46788 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46979 * 299.99686 * 1 2 3 28 28 H 1.08992 * 109.47588 * 240.00327 * 2 1 3 29 29 H 1.09003 * 109.47612 * 119.99703 * 2 1 3 30 30 H 0.96998 * 119.99593 * 179.97438 * 8 7 5 31 31 H 0.97002 * 119.99916 * 179.97438 * 15 14 13 32 32 H 0.96695 * 114.00212 * 270.25818 * 18 17 16 33 33 H 1.07998 * 120.23710 * 359.94587 * 20 19 17 34 34 H 1.08009 * 119.74830 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.67920 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.13486 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8815 -1.3818 10 1 6.5987 1.5466 -0.1942 11 1 6.4971 -0.5172 -1.4630 12 1 6.3989 1.6170 -2.6102 13 7 1.6523 2.0976 1.2518 14 6 2.1686 1.6578 2.4488 15 7 3.0077 0.6492 2.4446 16 7 1.8390 2.2216 3.6209 17 6 1.0071 3.2402 3.6922 18 8 0.6990 3.7909 4.8860 19 6 0.4149 3.7649 2.4540 20 6 -0.4764 4.8383 2.4667 21 6 -1.0055 5.2957 1.2795 22 6 -0.6585 4.6969 0.0771 23 6 0.2218 3.6348 0.0487 24 6 0.7656 3.1599 1.2334 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0602 -2.9502 31 1 3.3819 0.3261 3.2792 32 1 -0.0666 3.3889 5.3187 33 1 -0.7501 5.3070 3.4004 34 1 -1.6961 6.1261 1.2852 35 1 -1.0815 5.0658 -0.8456 36 1 0.4866 3.1750 -0.8920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:15 Heat of formation + Delta-G solvation = 33.080904 kcal Electronic energy + Delta-G solvation = -21477.289414 eV Core-core repulsion = 18348.021276 eV Total energy + Delta-G solvation = -3129.268138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.14360 -39.27292 -38.77161 -36.75980 -34.51836 -33.78359 -32.88421 -31.77518 -30.08830 -28.74520 -25.48409 -25.15277 -24.00567 -23.33673 -21.51480 -20.08961 -19.79867 -18.71264 -18.42890 -17.35521 -16.78687 -16.56036 -16.19437 -15.83629 -15.24417 -15.16040 -14.96312 -14.56733 -14.25591 -13.74217 -13.49694 -13.18754 -13.08833 -12.99212 -12.85840 -12.69729 -12.30563 -12.14843 -11.99396 -11.69200 -11.54455 -11.03601 -10.76071 -10.59155 -10.46601 -10.13216 -9.70183 -8.36721 -8.07863 -6.16397 -0.53505 0.35954 0.77148 1.34518 1.37949 1.48522 1.87818 2.25230 2.38585 2.43670 3.03459 3.16035 3.41339 3.64828 4.08477 4.28624 4.33569 4.44882 4.47730 4.52879 4.62930 4.66408 4.76378 4.88832 5.06350 5.15413 5.22931 5.32556 5.39904 5.56853 5.62102 5.70422 5.85651 5.89749 6.01821 6.25239 6.35159 6.56371 6.80627 6.91025 7.45200 7.67177 8.93006 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019480 B = 0.007078 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.033394 B = 3955.060496 C = 4412.035014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.127 4.127 3 C 0.285 3.715 4 H 0.047 0.953 5 C -0.494 4.494 6 H 0.035 0.965 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.287 1.287 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.514 5.514 14 C 0.545 3.455 15 N -0.736 5.736 16 N -0.597 5.597 17 C 0.460 3.540 18 O -0.467 6.467 19 C -0.234 4.234 20 C -0.017 4.017 21 C -0.166 4.166 22 C -0.031 4.031 23 C -0.199 4.199 24 C 0.209 3.791 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.333 0.667 32 H 0.435 0.565 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 10.570 7.416 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.184 3.816 4 H 0.064 0.936 5 C -0.533 4.533 6 H 0.053 0.947 7 C -0.177 4.177 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.213 1.213 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.216 5.216 14 C 0.176 3.824 15 N -0.371 5.371 16 N -0.328 5.328 17 C 0.241 3.759 18 O -0.278 6.278 19 C -0.243 4.243 20 C -0.037 4.037 21 C -0.186 4.186 22 C -0.051 4.051 23 C -0.221 4.221 24 C 0.101 3.899 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.301 0.699 33 H 0.189 0.811 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.468 9.544 6.920 17.159 hybrid contribution 0.862 -0.367 0.341 0.997 sum -11.606 9.177 7.261 16.482 Atomic orbital electron populations 1.21649 0.96643 1.00526 0.99848 1.21743 0.93738 0.98800 1.02316 1.18895 0.94269 0.90100 0.78353 0.93599 1.21188 0.91797 1.36606 1.03699 0.94667 1.25352 1.01591 0.95271 0.95519 1.69933 1.35755 1.39800 1.09939 0.85608 0.81590 0.77605 0.77285 1.21259 1.20694 1.19897 1.45077 1.39509 1.29230 1.07800 1.19439 0.91420 0.91504 0.80029 1.70523 1.16823 1.16297 1.33417 1.69133 1.21793 1.15262 1.26629 1.21328 0.85078 0.83535 0.85913 1.84467 1.55130 1.58466 1.29764 1.19495 1.08930 1.05652 0.90245 1.21413 0.90624 0.90625 1.01003 1.21460 1.03383 1.02829 0.90888 1.21611 0.91840 0.91105 1.00556 1.20933 1.03300 1.02152 0.95739 1.18562 0.88889 0.86911 0.95547 0.93033 0.92965 0.95105 0.90406 0.93617 0.92757 0.85145 0.69899 0.81095 0.81169 0.82092 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 9.80 71.98 0.71 -4.56 16 2 C -0.13 -6.36 5.18 30.59 0.16 -6.21 16 3 C 0.28 14.56 1.88 44.25 0.08 14.64 16 4 H 0.05 2.41 5.45 -2.39 -0.01 2.40 16 5 C -0.49 -28.57 7.31 25.60 0.19 -28.38 16 6 H 0.04 2.19 7.06 -2.91 -0.02 2.17 16 7 C 0.02 1.20 5.29 84.66 0.45 1.65 16 8 N -0.91 -52.05 11.29 21.45 0.24 -51.81 16 9 Si 0.95 46.74 29.54 68.60 2.03 48.76 16 10 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.51 -23.51 2.11 -501.54 -1.06 -24.57 16 14 C 0.54 25.64 7.67 261.71 2.01 27.65 16 15 N -0.74 -37.31 9.98 -60.05 -0.60 -37.91 16 16 N -0.60 -24.09 10.38 -306.50 -3.18 -27.27 16 17 C 0.46 14.31 8.03 86.99 0.70 15.01 16 18 O -0.47 -9.74 12.99 -83.01 -1.08 -10.82 16 19 C -0.23 -7.00 5.88 -20.09 -0.12 -7.11 16 20 C -0.02 -0.32 9.68 22.47 0.22 -0.10 16 21 C -0.17 -2.76 10.02 22.28 0.22 -2.54 16 22 C -0.03 -0.67 10.02 22.33 0.22 -0.45 16 23 C -0.20 -6.42 9.34 22.33 0.21 -6.21 16 24 C 0.21 7.80 6.52 38.82 0.25 8.05 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.03 1.21 7.74 -2.38 -0.02 1.19 16 28 H 0.08 4.31 5.95 -2.39 -0.01 4.30 16 29 H 0.05 2.45 6.26 -2.39 -0.01 2.43 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.33 15.69 8.88 -92.71 -0.82 14.87 16 32 H 0.44 3.79 9.06 -74.06 -0.67 3.12 16 33 H 0.17 1.97 7.75 -2.91 -0.02 1.95 16 34 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.12 4.42 5.90 -2.91 -0.02 4.40 16 Total: -1.00 -74.29 298.99 1.30 -73.00 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.35 Total: 19.17 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.30 Total: 11.44 kcal Atomic # 7 Polarization: -136.96 SS G_CDS: -4.60 Total: -141.56 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.08 Total: -10.82 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.29 1.30 -73.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.080 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds