Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46899 * 2 1 4 4 H 1.09003 * 109.47333 * 305.70625 * 3 2 1 5 5 C 1.50699 * 109.47100 * 65.70725 * 3 2 1 6 6 H 1.08005 * 119.99820 * 33.11729 * 5 3 2 7 7 C 1.37881 * 120.00362 * 213.11853 * 5 3 2 8 8 N 1.31512 * 119.99435 * 4.00498 * 7 5 3 9 9 Si 1.86799 * 119.99987 * 184.27691 * 7 5 3 10 10 H 1.48507 * 109.46799 * 179.72427 * 9 7 5 11 11 H 1.48495 * 109.47459 * 299.72716 * 9 7 5 12 12 H 1.48496 * 109.47152 * 59.73040 * 9 7 5 13 13 N 1.46505 * 109.46994 * 185.70404 * 3 2 1 14 14 C 1.37563 * 120.08735 * 293.49846 * 13 3 2 15 15 N 1.31211 * 118.87542 * 0.02562 * 14 13 3 16 16 N 1.34184 * 122.25216 * 179.74746 * 14 13 3 17 17 C 1.31698 * 121.82364 * 0.54145 * 16 14 13 18 18 O 1.35035 * 120.48862 * 179.71508 * 17 16 14 19 19 C 1.46945 * 119.02335 * 359.73174 * 17 16 14 20 20 C 1.39529 * 121.62507 * 180.02562 * 19 17 16 21 21 C 1.37779 * 119.52346 * 179.97438 * 20 19 17 22 22 C 1.38746 * 120.49342 * 0.02562 * 21 20 19 23 23 C 1.37989 * 120.64028 * 359.95215 * 22 21 20 24 24 C 1.38403 * 120.07956 * 113.77462 * 13 3 2 25 25 H 1.08995 * 109.46974 * 304.72965 * 1 2 3 26 26 H 1.09002 * 109.46849 * 64.73143 * 1 2 3 27 27 H 1.09002 * 109.47027 * 184.72542 * 1 2 3 28 28 H 1.09006 * 109.47067 * 240.00651 * 2 1 3 29 29 H 1.08994 * 109.47154 * 120.00458 * 2 1 3 30 30 H 0.96997 * 120.00116 * 354.61662 * 8 7 5 31 31 H 0.96995 * 119.99973 * 179.97438 * 15 14 13 32 32 H 0.96700 * 113.99669 * 270.02249 * 18 17 16 33 33 H 1.07995 * 120.24215 * 359.95821 * 20 19 17 34 34 H 1.08000 * 119.75602 * 180.02562 * 21 20 19 35 35 H 1.08002 * 119.67680 * 179.97438 * 22 21 20 36 36 H 1.07995 * 120.12976 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5956 1.9850 -0.8345 5 6 1.6563 2.1109 1.2950 6 1 1.6105 1.5346 2.2073 7 6 1.3637 3.4582 1.3153 8 7 1.3424 4.1433 0.1929 9 14 1.0050 4.3117 2.9377 10 1 0.7286 5.7497 2.6899 11 1 -0.1789 3.6830 3.5767 12 1 2.1801 4.1813 3.8361 13 7 3.4986 1.4448 -0.1373 14 6 4.2867 0.9354 0.8685 15 7 3.7091 0.4517 1.9428 16 7 5.6258 0.9112 0.7863 17 6 6.2659 1.3856 -0.2624 18 8 7.6148 1.3528 -0.3143 19 6 5.4905 1.9513 -1.3750 20 6 6.1126 2.4681 -2.5120 21 6 5.3432 2.9877 -3.5300 22 6 3.9594 3.0002 -3.4306 23 6 3.3300 2.4923 -2.3125 24 6 4.0872 1.9648 -1.2769 25 1 -0.3633 0.5854 0.8446 26 1 -0.3633 0.4387 -0.9294 27 1 -0.3633 -1.0242 0.0847 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6083 3.7204 -0.6386 31 1 4.2491 0.0881 2.6618 32 1 8.0417 2.1394 0.0518 33 1 7.1895 2.4610 -2.5935 34 1 5.8208 3.3883 -4.4120 35 1 3.3691 3.4111 -4.2363 36 1 2.2523 2.5058 -2.2440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = 24.731529 kcal Electronic energy + Delta-G solvation = -21580.917897 eV Core-core repulsion = 18451.287703 eV Total energy + Delta-G solvation = -3129.630194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.12175 -39.30284 -38.78367 -36.93422 -34.36886 -33.90335 -33.35135 -31.81497 -30.02679 -27.97890 -25.74587 -25.24757 -23.97676 -23.27816 -21.87090 -20.21110 -19.80403 -19.08731 -18.56138 -17.23470 -16.58176 -16.57375 -16.04693 -15.74565 -15.64898 -15.23807 -15.01731 -14.87860 -14.29953 -13.78610 -13.45262 -13.28238 -13.10455 -12.86815 -12.70588 -12.65710 -12.22582 -12.04995 -11.98340 -11.88971 -11.33755 -10.87077 -10.73075 -10.68009 -10.54168 -10.16197 -9.73798 -8.59160 -8.29516 -6.28664 -0.57328 0.32645 0.73389 1.47281 1.50467 1.73917 1.88048 2.22734 2.37067 2.50220 3.02351 3.26044 3.39212 3.61672 4.03519 4.18898 4.23142 4.28930 4.40405 4.46804 4.54933 4.57487 4.67229 4.90251 4.95087 5.01159 5.14430 5.17630 5.31597 5.45518 5.50844 5.55633 5.72263 5.96566 6.09421 6.25663 6.42233 6.51672 6.69727 6.89969 7.44270 7.66839 8.78140 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.007891 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.183303 B = 3547.368625 C = 3781.795548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.240 3.760 4 H 0.054 0.946 5 C -0.551 4.551 6 H 0.054 0.946 7 C -0.021 4.021 8 N -0.927 5.927 9 Si 1.105 2.895 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.293 1.293 13 N -0.516 5.516 14 C 0.546 3.454 15 N -0.739 5.739 16 N -0.598 5.598 17 C 0.457 3.543 18 O -0.466 6.466 19 C -0.240 4.240 20 C -0.018 4.018 21 C -0.169 4.169 22 C -0.035 4.035 23 C -0.199 4.199 24 C 0.203 3.797 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.266 0.734 31 H 0.330 0.670 32 H 0.434 0.566 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.426 -0.706 -9.260 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.142 3.858 4 H 0.072 0.928 5 C -0.590 4.590 6 H 0.073 0.927 7 C -0.222 4.222 8 N -0.566 5.566 9 Si 0.929 3.071 10 H -0.207 1.207 11 H -0.193 1.193 12 H -0.219 1.219 13 N -0.219 5.219 14 C 0.177 3.823 15 N -0.374 5.374 16 N -0.329 5.329 17 C 0.239 3.761 18 O -0.278 6.278 19 C -0.249 4.249 20 C -0.038 4.038 21 C -0.188 4.188 22 C -0.054 4.054 23 C -0.221 4.221 24 C 0.094 3.906 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.300 0.700 33 H 0.189 0.811 34 H 0.189 0.811 35 H 0.177 0.823 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.948 -0.360 -7.601 11.004 hybrid contribution 1.096 -0.940 -0.382 1.493 sum 9.044 -1.300 -7.983 12.133 Atomic orbital electron populations 1.21494 0.94159 1.01066 1.01429 1.21617 0.97075 0.96740 0.99735 1.19339 0.74213 0.94317 0.97891 0.92795 1.22220 1.45866 0.95655 0.95303 0.92724 1.26977 0.93912 0.95854 1.05459 1.70922 1.45322 1.40772 0.99551 0.83051 0.76934 0.75369 0.71747 1.20716 1.19331 1.21936 1.46620 1.09612 1.52838 1.12813 1.19566 0.81399 0.91569 0.89732 1.70453 1.38277 1.25263 1.03453 1.69084 1.08977 1.26479 1.28403 1.21291 0.85115 0.83302 0.86377 1.84431 1.11406 1.48273 1.83671 1.19544 0.90978 1.13785 1.00574 1.21418 1.01722 0.91261 0.89404 1.21437 0.92848 1.03596 1.00926 1.21601 0.96035 0.92355 0.95449 1.20810 0.99792 1.06375 0.95110 1.18721 0.92189 0.92208 0.87465 0.93133 0.93467 0.91778 0.95106 0.92196 0.92233 0.85431 0.70028 0.81058 0.81102 0.82328 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.81 71.98 0.71 -4.23 16 2 C -0.11 -5.13 5.34 30.59 0.16 -4.96 16 3 C 0.24 12.01 1.90 44.24 0.08 12.09 16 4 H 0.05 2.78 3.82 -2.39 -0.01 2.77 16 5 C -0.55 -30.57 6.00 25.60 0.15 -30.42 16 6 H 0.05 3.22 7.02 -2.91 -0.02 3.20 16 7 C -0.02 -1.18 5.46 84.66 0.46 -0.71 16 8 N -0.93 -53.51 13.62 21.45 0.29 -53.22 16 9 Si 1.10 51.97 29.91 68.60 2.05 54.02 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 13 N -0.52 -24.70 2.66 -501.54 -1.33 -26.04 16 14 C 0.55 26.56 7.87 261.71 2.06 28.62 16 15 N -0.74 -37.10 9.88 -60.05 -0.59 -37.69 16 16 N -0.60 -25.55 10.38 -306.50 -3.18 -28.73 16 17 C 0.46 15.66 8.03 87.00 0.70 16.36 16 18 O -0.47 -10.99 12.99 -83.07 -1.08 -12.07 16 19 C -0.24 -8.10 5.88 -20.09 -0.12 -8.22 16 20 C -0.02 -0.42 9.68 22.47 0.22 -0.20 16 21 C -0.17 -3.49 10.02 22.28 0.22 -3.27 16 22 C -0.03 -0.90 10.02 22.33 0.22 -0.67 16 23 C -0.20 -7.29 8.82 22.33 0.20 -7.09 16 24 C 0.20 8.37 6.53 38.82 0.25 8.63 16 25 H 0.05 2.21 7.26 -2.39 -0.02 2.19 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.06 2.93 6.60 -2.39 -0.02 2.91 16 30 H 0.27 14.92 5.38 -92.71 -0.50 14.42 16 31 H 0.33 15.46 8.87 -92.71 -0.82 14.64 16 32 H 0.43 5.34 9.06 -74.06 -0.67 4.67 16 33 H 0.17 2.56 7.75 -2.91 -0.02 2.54 16 34 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.12 4.66 5.36 -2.91 -0.02 4.65 16 Total: -1.00 -73.49 297.78 1.40 -72.09 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.08 Total: 25.73 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 5.32 Total: 5.91 kcal Atomic # 7 Polarization: -140.86 SS G_CDS: -4.82 Total: -145.68 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.08 Total: -12.07 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.05 Total: 54.02 kcal Total: -73.49 1.40 -72.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.819 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds