Wall clock time and date at job start Mon Mar 30 2020 01:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.27569 * 126.41736 * 2 1 4 4 N 1.39139 * 113.16796 * 180.02562 * 3 2 1 5 5 C 1.46498 * 124.44161 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47188 * 270.02275 * 5 4 3 7 7 C 1.38653 * 120.78985 * 269.71588 * 6 5 4 8 8 C 1.38206 * 119.15903 * 179.75733 * 7 6 5 9 9 N 1.31871 * 120.76424 * 0.52932 * 8 7 6 10 10 C 1.31874 * 121.72501 * 359.74769 * 9 8 7 11 11 C 1.38198 * 120.76635 * 359.97306 * 10 9 8 12 12 C 1.34959 * 111.12024 * 359.97438 * 4 3 2 13 13 O 1.21303 * 127.50159 * 179.97438 * 12 4 3 14 14 C 1.51430 * 126.41532 * 180.02562 * 2 1 3 15 15 H 1.09007 * 110.74458 * 298.55634 * 14 2 1 16 16 C 1.53004 * 110.61059 * 61.46350 * 14 2 1 17 17 C 1.50700 * 109.47208 * 180.57908 * 16 14 2 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 14 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 270.00126 * 21 19 17 23 23 H 1.48496 * 109.47029 * 30.00143 * 21 19 17 24 24 H 1.48499 * 109.47352 * 149.99973 * 21 19 17 25 25 H 1.08993 * 109.46994 * 269.97436 * 1 2 3 26 26 H 1.09001 * 109.46794 * 29.97387 * 1 2 3 27 27 H 1.09003 * 109.46955 * 149.97372 * 1 2 3 28 28 H 1.08999 * 109.46714 * 30.02702 * 5 4 3 29 29 H 1.09004 * 109.46939 * 150.02111 * 5 4 3 30 30 H 1.07992 * 120.41615 * 0.02562 * 7 6 5 31 31 H 1.07996 * 119.61817 * 180.25389 * 8 7 6 32 32 H 1.08004 * 119.61295 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.42046 * 179.97438 * 11 10 9 34 34 H 1.08994 * 109.47074 * 60.58218 * 16 14 2 35 35 H 1.08998 * 109.47285 * 300.58053 * 16 14 2 36 36 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7077 -0.0006 5 6 4.7021 1.6938 -0.0012 6 6 5.0726 2.0321 -1.4223 7 6 6.0530 1.3144 -2.0902 8 6 6.3624 1.6502 -3.3947 9 7 5.7448 2.6461 -3.9994 10 6 4.8116 3.3538 -3.3932 11 6 4.4453 3.0723 -2.0908 12 6 3.8036 -0.6292 -0.0004 13 8 4.8580 -1.2289 -0.0012 14 6 2.4060 -1.2186 -0.0005 15 1 2.2431 -1.8190 0.8946 16 6 2.1752 -2.0576 -1.2590 17 6 3.0709 -3.2691 -1.2264 18 1 3.7378 -3.4252 -0.3914 19 6 3.0391 -4.1781 -2.2626 20 7 2.2274 -3.9877 -3.2797 21 14 4.1489 -5.6801 -2.2219 22 1 5.4432 -5.3571 -2.8744 23 1 4.3911 -6.0785 -0.8120 24 1 3.4946 -6.7988 -2.9469 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5143 28 1 4.3721 2.5964 0.5130 29 1 5.5703 1.2801 0.5120 30 1 6.5651 0.5004 -1.5989 31 1 7.1219 1.0934 -3.9233 32 1 4.3281 4.1626 -3.9209 33 1 3.6806 3.6557 -1.5995 34 1 2.4044 -1.4600 -2.1412 35 1 1.1337 -2.3768 -1.2970 36 1 1.6508 -3.2078 -3.3006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317891628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:02 Heat of formation + Delta-G solvation = 23.224278 kcal Electronic energy + Delta-G solvation = -20754.719299 eV Core-core repulsion = 17625.023746 eV Total energy + Delta-G solvation = -3129.695553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.42988 -41.08346 -38.54526 -36.57446 -35.43824 -33.39238 -32.25886 -32.07098 -29.98888 -28.05959 -26.73862 -24.67187 -24.49184 -23.17236 -21.85752 -20.60136 -18.96968 -18.31836 -17.63028 -17.40294 -17.00200 -16.59186 -16.41484 -15.76670 -15.62900 -15.06895 -14.73979 -14.70371 -14.56547 -14.36593 -14.03608 -13.76856 -13.63042 -13.51016 -13.22377 -12.76485 -12.59978 -12.50199 -12.24661 -11.97547 -11.71675 -11.15498 -10.80855 -10.64782 -10.60852 -10.41363 -10.20106 -9.69840 -8.70617 -6.39964 -0.01429 0.08449 0.59347 1.42770 1.47665 1.55335 1.55947 1.74922 2.51004 2.76600 2.89541 3.13381 3.19707 3.43188 3.52085 3.63326 3.86404 4.02527 4.08890 4.14810 4.23616 4.37447 4.46852 4.58521 4.65711 4.76153 4.81835 4.87035 4.95035 5.00582 5.08568 5.12612 5.23785 5.47224 5.64568 5.89371 6.16925 6.53744 6.61189 6.82272 6.87865 7.36180 8.70650 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.006646 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.327435 B = 4212.208453 C = 5173.314407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.114 3.886 3 N -0.252 5.252 4 N -0.475 5.475 5 C 0.179 3.821 6 C -0.079 4.079 7 C -0.167 4.167 8 C 0.083 3.917 9 N -0.505 5.505 10 C 0.087 3.913 11 C -0.144 4.144 12 C 0.499 3.501 13 O -0.522 6.522 14 C -0.133 4.133 15 H 0.130 0.870 16 C 0.053 3.947 17 C -0.605 4.605 18 H 0.047 0.953 19 C -0.031 4.031 20 N -0.935 5.935 21 Si 1.111 2.889 22 H -0.284 1.284 23 H -0.270 1.270 24 H -0.274 1.274 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.164 0.836 34 H -0.024 1.024 35 H 0.033 0.967 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 15.097 7.190 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 N -0.058 5.058 4 N -0.294 5.294 5 C 0.058 3.942 6 C -0.088 4.088 7 C -0.188 4.188 8 C -0.072 4.072 9 N -0.214 5.214 10 C -0.070 4.070 11 C -0.164 4.164 12 C 0.287 3.713 13 O -0.395 6.395 14 C -0.157 4.157 15 H 0.148 0.852 16 C 0.015 3.985 17 C -0.643 4.643 18 H 0.065 0.935 19 C -0.229 4.229 20 N -0.573 5.573 21 Si 0.933 3.067 22 H -0.210 1.210 23 H -0.195 1.195 24 H -0.199 1.199 25 H 0.136 0.864 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.151 0.849 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.185 0.815 32 H 0.205 0.795 33 H 0.181 0.819 34 H -0.006 1.006 35 H 0.051 0.949 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.538 14.710 5.534 15.726 hybrid contribution -0.163 0.070 1.384 1.396 sum 0.374 14.780 6.918 16.323 Atomic orbital electron populations 1.20567 0.81620 1.05192 1.05850 1.26012 0.99054 0.89340 0.93445 1.74549 0.88147 1.26408 1.16732 1.49875 1.03669 1.05430 1.70455 1.20500 0.87958 0.93205 0.92501 1.20807 0.95054 0.95373 0.97587 1.22266 0.99270 1.00263 0.96952 1.22995 0.98347 0.93870 0.92027 1.67699 1.08642 1.06610 1.38498 1.23340 0.93032 0.98172 0.92443 1.22344 1.00212 0.97707 0.96175 1.21587 0.91760 0.83272 0.74713 1.90666 1.32351 1.66939 1.49564 1.21819 0.92120 0.97768 1.03947 0.85241 1.18721 0.97551 0.93077 0.89126 1.22321 1.24420 1.08717 1.08810 0.93499 1.27141 0.99041 1.04706 0.92046 1.70905 1.24146 1.30269 1.31942 0.83005 0.74146 0.72819 0.76718 1.21048 1.19534 1.19940 0.86383 0.88177 0.89525 0.84903 0.88234 0.85573 0.81451 0.79535 0.81857 1.00574 0.94853 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.49 71.24 0.75 -0.74 16 2 C 0.11 3.51 6.93 46.83 0.32 3.83 16 3 N -0.25 -7.88 12.02 -40.85 -0.49 -8.37 16 4 N -0.47 -16.47 3.52 -465.39 -1.64 -18.11 16 5 C 0.18 4.86 6.41 85.63 0.55 5.41 16 6 C -0.08 -2.28 5.50 -19.67 -0.11 -2.38 16 7 C -0.17 -5.35 9.82 22.36 0.22 -5.13 16 8 C 0.08 2.58 11.18 84.68 0.95 3.52 16 9 N -0.50 -15.42 10.36 -195.84 -2.03 -17.45 16 10 C 0.09 2.18 11.18 84.68 0.95 3.12 16 11 C -0.14 -3.52 9.82 22.36 0.22 -3.30 16 12 C 0.50 21.61 7.56 87.94 0.67 22.28 16 13 O -0.52 -26.25 16.61 -3.10 -0.05 -26.30 16 14 C -0.13 -5.38 3.01 -11.74 -0.04 -5.42 16 15 H 0.13 4.99 8.14 -2.38 -0.02 4.98 16 16 C 0.05 2.68 3.81 29.85 0.11 2.80 16 17 C -0.60 -35.03 8.36 25.60 0.21 -34.82 16 18 H 0.05 2.80 7.06 -2.91 -0.02 2.78 16 19 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 20 N -0.93 -57.82 13.65 21.45 0.29 -57.53 16 21 Si 1.11 52.84 29.90 68.60 2.05 54.89 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.86 7.57 -2.39 -0.02 1.84 16 28 H 0.13 2.62 8.10 -2.39 -0.02 2.61 16 29 H 0.10 2.67 7.99 -2.38 -0.02 2.65 16 30 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.17 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.19 3.27 8.06 -2.91 -0.02 3.24 16 33 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 34 H -0.02 -1.36 8.01 -2.39 -0.02 -1.38 16 35 H 0.03 1.63 7.45 -2.39 -0.02 1.61 16 36 H 0.26 15.84 7.22 -92.70 -0.67 15.17 16 Total: -1.00 -76.92 316.99 4.58 -72.34 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.19 Total: 12.74 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 5.27 Total: -12.22 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -3.87 Total: -101.45 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 2.05 Total: 54.89 kcal Total: -76.92 4.58 -72.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317891628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.564 kcal (2) G-P(sol) polarization free energy of solvation -76.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds