Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27568 * 126.41860 * 2 1 4 4 N 1.39153 * 113.16492 * 180.14717 * 3 2 1 5 5 C 1.46500 * 124.43979 * 179.76700 * 4 3 2 6 6 C 1.50706 * 109.46949 * 269.70360 * 5 4 3 7 7 C 1.38645 * 120.78945 * 269.71715 * 6 5 4 8 8 C 1.38208 * 119.16036 * 179.76075 * 7 6 5 9 9 N 1.31868 * 120.76509 * 0.53021 * 8 7 6 10 10 C 1.31870 * 121.72608 * 359.73889 * 9 8 7 11 11 C 1.38211 * 120.76161 * 359.97438 * 10 9 8 12 12 C 1.34949 * 111.11920 * 359.50803 * 4 3 2 13 13 O 1.21300 * 127.49862 * 180.24223 * 12 4 3 14 14 C 1.51439 * 126.41388 * 179.62218 * 2 1 3 15 15 H 1.08993 * 110.61012 * 61.51951 * 14 2 1 16 16 C 1.53003 * 110.73957 * 298.61193 * 14 2 1 17 17 C 1.50704 * 109.46915 * 179.34355 * 16 14 2 18 18 H 1.07999 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.37883 * 119.99798 * 180.02562 * 17 16 14 20 20 N 1.31510 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99900 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46823 * 60.00037 * 21 19 17 23 23 H 1.48496 * 109.46827 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47157 * 300.00175 * 21 19 17 25 25 H 1.09004 * 109.47120 * 270.38094 * 1 2 3 26 26 H 1.09004 * 109.46880 * 30.37658 * 1 2 3 27 27 H 1.08997 * 109.47659 * 150.37676 * 1 2 3 28 28 H 1.09000 * 109.46609 * 149.70539 * 5 4 3 29 29 H 1.09000 * 109.47175 * 29.70334 * 5 4 3 30 30 H 1.07998 * 120.41988 * 0.02562 * 7 6 5 31 31 H 1.08003 * 119.61836 * 180.30026 * 8 7 6 32 32 H 1.07999 * 119.61824 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.41622 * 179.97438 * 11 10 9 34 34 H 1.08996 * 109.47504 * 299.34165 * 16 14 2 35 35 H 1.08998 * 109.46774 * 59.34381 * 16 14 2 36 36 H 0.97002 * 119.99806 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6188 0.7075 -0.0033 5 6 4.7022 1.6936 -0.0089 6 6 5.0744 2.0228 -1.4317 7 6 6.0554 1.3008 -2.0939 8 6 6.3665 1.6283 -3.4001 9 7 5.7498 2.6204 -4.0120 10 6 4.8159 3.3318 -3.4116 11 6 4.4478 3.0586 -2.1077 12 6 3.8035 -0.6292 0.0051 13 8 4.8579 -1.2290 0.0090 14 6 2.4060 -1.2187 0.0080 15 1 2.2422 -1.8221 -0.8847 16 6 2.1762 -2.0532 1.2697 17 6 3.0719 -3.2648 1.2406 18 1 3.7380 -3.4240 0.4056 19 6 3.0401 -4.1707 2.2796 20 7 2.2278 -3.9776 3.2957 21 14 4.1498 -5.6729 2.2432 22 1 5.5688 -5.2388 2.1890 23 1 3.9268 -6.4827 3.4678 24 1 3.8363 -6.4910 1.0442 25 1 -0.3633 0.0068 1.0277 26 1 -0.3633 0.8866 -0.5197 27 1 -0.3634 -0.8933 -0.5079 28 1 5.5697 1.2831 0.5079 29 1 4.3716 2.5996 0.4991 30 1 6.5670 0.4900 -1.5968 31 1 7.1261 1.0676 -3.9246 32 1 4.3330 4.1373 -3.9448 33 1 3.6825 3.6451 -1.6212 34 1 2.4062 -1.4524 2.1496 35 1 1.1346 -2.3721 1.3096 36 1 2.2052 -4.6151 4.0264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317891629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = 49.342572 kcal Electronic energy + Delta-G solvation = -20460.166569 eV Core-core repulsion = 17331.603590 eV Total energy + Delta-G solvation = -3128.562979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89755 -40.01138 -36.83688 -35.04268 -33.29387 -32.03297 -31.26362 -30.41208 -28.84376 -26.61509 -25.38453 -23.53254 -22.71255 -21.80258 -20.15876 -19.06077 -17.03604 -16.67394 -16.35404 -16.03341 -15.67208 -15.19932 -14.70999 -14.40796 -14.13790 -13.81620 -13.72145 -13.31377 -13.09087 -12.87384 -12.51324 -12.29396 -12.14267 -11.58258 -11.47618 -11.43085 -11.27855 -10.88210 -10.63757 -10.30754 -9.86567 -9.63352 -9.56735 -9.38939 -9.21029 -8.80708 -8.39310 -8.21384 -6.05473 -4.06859 1.06092 1.08146 2.12439 2.83623 3.15880 3.35226 3.38238 3.44156 3.80260 4.36659 4.38479 4.44439 4.57837 4.64331 4.77751 5.04183 5.09363 5.27807 5.32079 5.43298 5.48802 5.58991 5.73342 5.74272 5.80708 5.89254 5.92931 6.08434 6.24830 6.33562 6.57022 6.62587 6.77487 7.38406 7.42711 7.87607 7.93080 8.11700 8.25775 8.47720 8.98734 9.57837 11.05749 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.005071 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.762280 B = 5520.651934 C = 6404.772250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.104 3.896 3 N -0.259 5.259 4 N -0.480 5.480 5 C 0.181 3.819 6 C -0.062 4.062 7 C -0.151 4.151 8 C 0.093 3.907 9 N -0.486 5.486 10 C 0.090 3.910 11 C -0.149 4.149 12 C 0.513 3.487 13 O -0.483 6.483 14 C -0.132 4.132 15 H 0.120 0.880 16 C 0.056 3.944 17 C -0.517 4.517 18 H 0.065 0.935 19 C 0.060 3.940 20 N -0.898 5.898 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.019 0.981 35 H 0.038 0.962 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 13.419 -8.894 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 N -0.065 5.065 4 N -0.301 5.301 5 C 0.059 3.941 6 C -0.072 4.072 7 C -0.171 4.171 8 C -0.063 4.063 9 N -0.195 5.195 10 C -0.067 4.067 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.352 6.352 14 C -0.155 4.155 15 H 0.138 0.862 16 C 0.018 3.982 17 C -0.555 4.555 18 H 0.083 0.917 19 C -0.141 4.141 20 N -0.537 5.537 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.157 0.843 31 H 0.173 0.827 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.001 14.263 -9.566 17.204 hybrid contribution 0.513 -1.816 0.997 2.134 sum 1.514 12.448 -8.569 15.188 Atomic orbital electron populations 1.20295 0.85286 1.03555 1.04052 1.25462 0.97310 0.91887 0.94227 1.74483 0.88856 1.26915 1.16253 1.49748 1.02446 1.06038 1.71868 1.20187 0.88956 0.93030 0.91888 1.20717 0.94657 0.94545 0.97274 1.22245 0.98264 1.00267 0.96321 1.22751 0.97809 0.93745 0.92010 1.67650 1.07708 1.06039 1.38135 1.22732 0.93822 0.97930 0.92197 1.22086 1.00401 0.98343 0.96130 1.21441 0.92092 0.81734 0.74648 1.90702 1.31152 1.65747 1.47642 1.22078 0.90680 0.96426 1.06356 0.86229 1.18886 0.98650 0.93278 0.87424 1.21158 1.22082 1.06056 1.06231 0.91700 1.24946 0.95582 0.98292 0.95276 1.69941 1.37704 1.36850 1.09229 0.86588 0.81374 0.82480 0.77236 1.20139 1.21337 1.20133 0.89263 0.90576 0.89568 0.88250 0.88458 0.84281 0.82715 0.82823 0.84578 0.96235 0.94372 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.49 36.01 0.38 -0.49 16 2 C 0.10 1.71 6.94 -78.73 -0.55 1.16 16 3 N -0.26 -4.35 12.02 35.53 0.43 -3.92 16 4 N -0.48 -8.56 3.52 -61.06 -0.22 -8.78 16 5 C 0.18 2.58 6.41 -5.19 -0.03 2.55 16 6 C -0.06 -0.84 5.50 -104.32 -0.57 -1.41 16 7 C -0.15 -2.04 9.82 -39.44 -0.39 -2.42 16 8 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 9 N -0.49 -6.49 10.36 -13.25 -0.14 -6.62 16 10 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 11 C -0.15 -1.76 9.82 -39.44 -0.39 -2.15 16 12 C 0.51 10.94 7.56 -10.43 -0.08 10.86 16 13 O -0.48 -11.67 16.61 5.54 0.09 -11.58 16 14 C -0.13 -2.67 3.00 -92.08 -0.28 -2.95 16 15 H 0.12 2.33 8.14 -51.93 -0.42 1.91 16 16 C 0.06 1.37 4.53 -27.88 -0.13 1.24 16 17 C -0.52 -14.46 8.36 -34.44 -0.29 -14.74 16 18 H 0.06 1.85 7.06 -52.49 -0.37 1.48 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 21 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.10 1.41 7.99 -51.93 -0.42 1.00 16 29 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -33.50 319.46 -6.68 -40.18 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.57 Total: -0.67 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.81 Total: -4.89 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.81 Total: -44.91 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.50 -6.68 -40.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317891629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.526 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds