Wall clock time and date at job start Mon Mar 30 2020 01:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27568 * 126.41860 * 2 1 4 4 N 1.39153 * 113.16492 * 180.14717 * 3 2 1 5 5 C 1.46500 * 124.43979 * 179.76700 * 4 3 2 6 6 C 1.50706 * 109.46949 * 269.70360 * 5 4 3 7 7 C 1.38645 * 120.78945 * 269.71715 * 6 5 4 8 8 C 1.38208 * 119.16036 * 179.76075 * 7 6 5 9 9 N 1.31868 * 120.76509 * 0.53021 * 8 7 6 10 10 C 1.31870 * 121.72608 * 359.73889 * 9 8 7 11 11 C 1.38211 * 120.76161 * 359.97438 * 10 9 8 12 12 C 1.34949 * 111.11920 * 359.50803 * 4 3 2 13 13 O 1.21300 * 127.49862 * 180.24223 * 12 4 3 14 14 C 1.51439 * 126.41388 * 179.62218 * 2 1 3 15 15 H 1.08993 * 110.61012 * 61.51951 * 14 2 1 16 16 C 1.53003 * 110.73957 * 298.61193 * 14 2 1 17 17 C 1.50704 * 109.46915 * 179.34355 * 16 14 2 18 18 H 1.07999 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.37883 * 119.99798 * 180.02562 * 17 16 14 20 20 N 1.31510 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99900 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46823 * 60.00037 * 21 19 17 23 23 H 1.48496 * 109.46827 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47157 * 300.00175 * 21 19 17 25 25 H 1.09004 * 109.47120 * 270.38094 * 1 2 3 26 26 H 1.09004 * 109.46880 * 30.37658 * 1 2 3 27 27 H 1.08997 * 109.47659 * 150.37676 * 1 2 3 28 28 H 1.09000 * 109.46609 * 149.70539 * 5 4 3 29 29 H 1.09000 * 109.47175 * 29.70334 * 5 4 3 30 30 H 1.07998 * 120.41988 * 0.02562 * 7 6 5 31 31 H 1.08003 * 119.61836 * 180.30026 * 8 7 6 32 32 H 1.07999 * 119.61824 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.41622 * 179.97438 * 11 10 9 34 34 H 1.08996 * 109.47504 * 299.34165 * 16 14 2 35 35 H 1.08998 * 109.46774 * 59.34381 * 16 14 2 36 36 H 0.97002 * 119.99806 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0265 0.0000 4 7 3.6188 0.7075 -0.0033 5 6 4.7022 1.6936 -0.0089 6 6 5.0744 2.0228 -1.4317 7 6 6.0554 1.3008 -2.0939 8 6 6.3665 1.6283 -3.4001 9 7 5.7498 2.6204 -4.0120 10 6 4.8159 3.3318 -3.4116 11 6 4.4478 3.0586 -2.1077 12 6 3.8035 -0.6292 0.0051 13 8 4.8579 -1.2290 0.0090 14 6 2.4060 -1.2187 0.0080 15 1 2.2422 -1.8221 -0.8847 16 6 2.1762 -2.0532 1.2697 17 6 3.0719 -3.2648 1.2406 18 1 3.7380 -3.4240 0.4056 19 6 3.0401 -4.1707 2.2796 20 7 2.2278 -3.9776 3.2957 21 14 4.1498 -5.6729 2.2432 22 1 5.5688 -5.2388 2.1890 23 1 3.9268 -6.4827 3.4678 24 1 3.8363 -6.4910 1.0442 25 1 -0.3633 0.0068 1.0277 26 1 -0.3633 0.8866 -0.5197 27 1 -0.3634 -0.8933 -0.5079 28 1 5.5697 1.2831 0.5079 29 1 4.3716 2.5996 0.4991 30 1 6.5670 0.4900 -1.5968 31 1 7.1261 1.0676 -3.9246 32 1 4.3330 4.1373 -3.9448 33 1 3.6825 3.6451 -1.6212 34 1 2.4062 -1.4524 2.1496 35 1 1.1346 -2.3721 1.3096 36 1 2.2052 -4.6151 4.0264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317891629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:04 Heat of formation + Delta-G solvation = 27.840685 kcal Electronic energy + Delta-G solvation = -20461.098961 eV Core-core repulsion = 17331.603590 eV Total energy + Delta-G solvation = -3129.495371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.33990 -41.03653 -38.46321 -36.38949 -35.16641 -33.35118 -32.21160 -32.16835 -29.91762 -28.27819 -26.87896 -24.55660 -24.36289 -23.02266 -21.71303 -20.51961 -18.58050 -18.12029 -17.72003 -17.34477 -16.82710 -16.58657 -16.41259 -16.03151 -15.70129 -14.88362 -14.66690 -14.59139 -14.38639 -14.19958 -14.06957 -13.61294 -13.49813 -13.28571 -13.13060 -12.82519 -12.66871 -12.47744 -12.45093 -12.05353 -11.59802 -11.37237 -10.83808 -10.64797 -10.59128 -10.39450 -10.15272 -9.62784 -8.23385 -6.30684 0.03176 0.13278 0.68488 1.36609 1.39570 1.47477 1.51161 1.62568 2.39416 2.82051 2.98158 3.12150 3.29508 3.47649 3.56213 3.68354 3.96207 4.07674 4.13494 4.27476 4.31923 4.42527 4.61750 4.63248 4.75954 4.82589 4.89541 4.91984 5.05881 5.16271 5.30582 5.32653 5.37971 5.56172 5.69052 5.74588 6.14016 6.68629 6.79192 6.90401 6.92593 7.37133 8.87524 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.005071 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.762280 B = 5520.651934 C = 6404.772250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.117 3.883 3 N -0.256 5.256 4 N -0.476 5.476 5 C 0.176 3.824 6 C -0.074 4.074 7 C -0.166 4.166 8 C 0.088 3.912 9 N -0.503 5.503 10 C 0.091 3.909 11 C -0.144 4.144 12 C 0.499 3.501 13 O -0.525 6.525 14 C -0.137 4.137 15 H 0.126 0.874 16 C 0.068 3.932 17 C -0.533 4.533 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.925 5.925 21 Si 0.952 3.048 22 H -0.283 1.283 23 H -0.277 1.277 24 H -0.264 1.264 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.173 0.827 32 H 0.187 0.813 33 H 0.159 0.841 34 H -0.012 1.012 35 H 0.038 0.962 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 14.651 -9.878 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 N -0.062 5.062 4 N -0.295 5.295 5 C 0.055 3.945 6 C -0.083 4.083 7 C -0.187 4.187 8 C -0.068 4.068 9 N -0.213 5.213 10 C -0.066 4.066 11 C -0.164 4.164 12 C 0.287 3.713 13 O -0.398 6.398 14 C -0.161 4.161 15 H 0.143 0.857 16 C 0.030 3.970 17 C -0.571 4.571 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.566 5.566 21 Si 0.778 3.222 22 H -0.209 1.209 23 H -0.202 1.202 24 H -0.189 1.189 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.190 0.810 32 H 0.204 0.796 33 H 0.177 0.823 34 H 0.007 0.993 35 H 0.057 0.943 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.156 15.532 -10.560 18.782 hybrid contribution 0.844 -2.130 1.287 2.628 sum 0.688 13.401 -9.272 16.311 Atomic orbital electron populations 1.20546 0.81676 1.05805 1.05105 1.26010 0.99022 0.89428 0.93076 1.74549 0.88106 1.26524 1.17059 1.49853 1.03643 1.05464 1.70549 1.20431 0.87882 0.93047 0.93095 1.20689 0.95278 0.95531 0.96806 1.22259 0.98977 1.00472 0.96970 1.23023 0.98153 0.93861 0.91726 1.67721 1.08468 1.06445 1.38636 1.23300 0.93001 0.98037 0.92273 1.22319 1.00299 0.97645 0.96169 1.21637 0.91872 0.83189 0.74563 1.90660 1.32419 1.66961 1.49793 1.21969 0.91786 0.97850 1.04505 0.85660 1.18585 0.97803 0.92352 0.88252 1.21448 1.22310 1.07429 1.05908 0.92999 1.25700 0.96897 1.01031 0.95036 1.70022 1.38904 1.37887 1.09743 0.85691 0.78983 0.79510 0.78024 1.20902 1.20152 1.18870 0.88576 0.87499 0.88170 0.89063 0.85766 0.85517 0.80974 0.79592 0.82318 0.99349 0.94331 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 10.49 71.24 0.75 -0.76 16 2 C 0.12 3.65 6.94 46.83 0.33 3.98 16 3 N -0.26 -8.16 12.02 -40.85 -0.49 -8.65 16 4 N -0.48 -16.77 3.52 -465.38 -1.64 -18.41 16 5 C 0.18 4.93 6.41 85.63 0.55 5.48 16 6 C -0.07 -1.92 5.50 -19.67 -0.11 -2.03 16 7 C -0.17 -4.54 9.82 22.36 0.22 -4.32 16 8 C 0.09 2.20 11.18 84.68 0.95 3.14 16 9 N -0.50 -12.61 10.36 -195.83 -2.03 -14.64 16 10 C 0.09 1.87 11.18 84.68 0.95 2.82 16 11 C -0.14 -3.05 9.82 22.36 0.22 -2.83 16 12 C 0.50 21.73 7.56 87.94 0.67 22.39 16 13 O -0.52 -26.43 16.61 -3.09 -0.05 -26.48 16 14 C -0.14 -5.58 3.00 -11.74 -0.04 -5.62 16 15 H 0.13 4.89 8.14 -2.39 -0.02 4.87 16 16 C 0.07 3.41 4.53 29.85 0.14 3.55 16 17 C -0.53 -30.42 8.36 25.60 0.21 -30.20 16 18 H 0.05 3.05 7.06 -2.91 -0.02 3.03 16 19 C 0.01 0.68 5.46 84.66 0.46 1.14 16 20 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 21 Si 0.95 45.62 29.54 68.60 2.03 47.64 16 22 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 25 H 0.10 1.93 8.14 -2.38 -0.02 1.92 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 29 H 0.12 2.75 8.10 -2.39 -0.02 2.73 16 30 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.12 319.46 4.47 -68.66 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.08 Total: 9.58 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.29 Total: -3.26 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.88 Total: -96.13 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.12 4.47 -68.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317891629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.497 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds