Wall clock time and date at job start Mon Mar 30 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36321 * 119.74822 * 2 1 4 4 C 1.47524 * 120.16821 * 359.97438 * 3 2 1 5 5 O 1.21597 * 119.99780 * 6.43178 * 4 3 2 6 6 N 1.34776 * 120.00031 * 186.43518 * 4 3 2 7 7 C 1.46496 * 119.99990 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47125 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47191 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99568 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99978 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99822 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00220 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47032 * 89.99426 * 13 11 9 15 15 H 1.48490 * 109.47157 * 209.99940 * 13 11 9 16 16 H 1.48504 * 109.46701 * 330.00058 * 13 11 9 17 17 C 1.46500 * 119.66650 * 180.02562 * 3 2 1 18 18 C 1.35532 * 119.04592 * 0.02562 * 17 3 2 19 19 C 1.41226 * 119.42984 * 359.97313 * 18 17 3 20 20 C 1.37910 * 132.97703 * 180.02562 * 19 18 17 21 21 N 1.33447 * 107.66239 * 179.75765 * 20 19 18 22 22 C 1.30751 * 109.93431 * 0.37132 * 21 20 19 23 23 N 1.35920 * 109.20881 * 359.62644 * 22 21 20 24 24 H 1.09000 * 109.46918 * 276.88571 * 1 2 3 25 25 H 1.08996 * 109.47085 * 36.88026 * 1 2 3 26 26 H 1.08996 * 109.47121 * 156.88118 * 1 2 3 27 27 H 0.96998 * 120.00086 * 359.97438 * 6 4 3 28 28 H 1.09004 * 109.47089 * 299.99433 * 7 6 4 29 29 H 1.09001 * 109.47214 * 59.99512 * 7 6 4 30 30 H 1.08992 * 109.47485 * 299.99922 * 8 7 6 31 31 H 1.09001 * 109.47106 * 59.99895 * 8 7 6 32 32 H 0.96996 * 120.00035 * 180.02562 * 12 11 9 33 33 H 1.07997 * 120.48024 * 180.02562 * 17 3 2 34 34 H 1.08009 * 120.28779 * 179.97438 * 18 17 3 35 35 H 1.08006 * 126.16483 * 359.97438 * 20 19 18 36 36 H 1.07999 * 125.39375 * 179.88558 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4439 2.4601 -0.0006 5 8 0.2337 2.4616 0.1169 6 7 2.1098 3.6245 -0.1314 7 6 1.3755 4.8922 -0.1314 8 6 2.3603 6.0520 -0.2924 9 6 1.6049 7.3561 -0.2931 10 1 0.5300 7.3574 -0.1886 11 6 2.2862 8.5473 -0.4259 12 7 1.6270 9.6854 -0.4260 13 14 4.1455 8.5450 -0.6059 14 1 4.5034 8.4661 -2.0449 15 1 4.7005 9.7940 -0.0254 16 1 4.7105 7.3728 0.1096 17 6 3.6484 1.1815 -0.0006 18 6 4.3047 -0.0043 -0.0016 19 6 3.5646 -1.2071 -0.0016 20 6 3.9312 -2.5366 -0.0020 21 7 2.8131 -3.2649 0.0037 22 6 1.7687 -2.4783 -0.0003 23 7 2.1836 -1.1840 -0.0005 24 1 -0.3633 0.1232 1.0203 25 1 -0.3633 0.8220 -0.6167 26 1 -0.3633 -0.9451 -0.4035 27 1 3.0753 3.6233 -0.2248 28 1 0.6653 4.9007 -0.9583 29 1 0.8378 5.0006 0.8105 30 1 3.0702 6.0434 0.5346 31 1 2.8983 5.9438 -1.2342 32 1 2.1062 10.5234 -0.5198 33 1 4.1976 2.1114 -0.0002 34 1 5.3845 -0.0293 -0.0025 35 1 4.9413 -2.9192 -0.0029 36 1 0.7393 -2.8053 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325255456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:09 Heat of formation + Delta-G solvation = 27.280394 kcal Electronic energy + Delta-G solvation = -19903.453245 eV Core-core repulsion = 16773.933578 eV Total energy + Delta-G solvation = -3129.519667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.82652 -41.01219 -38.09128 -36.77977 -35.19899 -34.62277 -32.78667 -31.92269 -29.80474 -28.58191 -26.87156 -24.74583 -23.72145 -22.60792 -22.29545 -21.65567 -19.33779 -18.91373 -18.18012 -17.34856 -17.19274 -16.85650 -16.44436 -16.22489 -15.83743 -15.37642 -15.08635 -14.83059 -14.56290 -14.52293 -14.10955 -14.01885 -13.59337 -13.33672 -13.02853 -12.62558 -12.46814 -12.16468 -12.14404 -11.75420 -11.67376 -11.50339 -11.40992 -10.84240 -10.77875 -10.41666 -10.00392 -8.56122 -8.29163 -6.36502 -0.46536 0.00365 1.33557 1.40504 1.43014 1.53958 1.59852 2.05700 2.23992 2.37853 2.46461 3.06319 3.24633 3.52176 3.58410 3.68727 3.78769 3.88140 4.26541 4.41012 4.44070 4.46220 4.53170 4.58157 4.71936 4.75924 4.93698 5.02888 5.12476 5.23206 5.41248 5.42626 5.45955 5.56420 5.64106 6.04547 6.22515 6.51078 6.71929 6.77145 7.14379 7.28331 8.87586 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035520 B = 0.003579 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.099774 B = 7820.582054 C = 8576.567265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.159 3.841 3 C -0.175 4.175 4 C 0.562 3.438 5 O -0.567 6.567 6 N -0.706 5.706 7 C 0.146 3.854 8 C -0.014 4.014 9 C -0.538 4.538 10 H 0.030 0.970 11 C 0.003 3.997 12 N -0.952 5.952 13 Si 0.957 3.043 14 H -0.266 1.266 15 H -0.289 1.289 16 H -0.234 1.234 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.011 4.011 20 C -0.026 4.026 21 N -0.480 5.480 22 C 0.149 3.851 23 N -0.382 5.382 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.412 0.588 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.267 0.733 33 H 0.165 0.835 34 H 0.186 0.814 35 H 0.206 0.794 36 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.848 -23.768 0.445 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.054 3.946 3 C -0.181 4.181 4 C 0.350 3.650 5 O -0.449 6.449 6 N -0.358 5.358 7 C 0.023 3.977 8 C -0.052 4.052 9 C -0.577 4.577 10 H 0.048 0.952 11 C -0.194 4.194 12 N -0.592 5.592 13 Si 0.780 3.220 14 H -0.191 1.191 15 H -0.215 1.215 16 H -0.157 1.157 17 C -0.126 4.126 18 C -0.096 4.096 19 C -0.118 4.118 20 C -0.177 4.177 21 N -0.193 5.193 22 C -0.125 4.125 23 N -0.055 5.055 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.250 0.750 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.223 0.777 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.863 -24.487 0.524 25.436 hybrid contribution 0.553 1.601 -0.096 1.696 sum 7.416 -22.886 0.428 24.061 Atomic orbital electron populations 1.21295 0.85819 1.05228 1.05288 1.20515 0.95997 0.82973 0.95091 1.20185 0.94998 0.91310 1.11619 1.17959 0.86638 0.83900 0.76505 1.90728 1.14939 1.87507 1.51689 1.45889 1.11775 1.05279 1.72810 1.21092 0.94846 0.81385 1.00426 1.19668 0.95604 0.91838 0.98107 1.21257 0.94349 0.91352 1.50710 0.95164 1.26085 1.04772 0.94661 0.93858 1.70077 1.38682 0.98669 1.51758 0.85560 0.78280 0.78750 0.79434 1.19051 1.21485 1.15653 1.22324 0.90390 1.00191 0.99708 1.20784 1.01765 0.87719 0.99354 1.20221 0.82505 0.98055 1.11056 1.23079 0.98940 0.86919 1.08802 1.70004 0.98757 1.33791 1.16790 1.25763 1.01703 0.76073 1.09003 1.43105 1.07962 1.06618 1.47834 0.88984 0.88056 0.88992 0.75006 0.93244 0.93261 0.94351 0.94553 0.92373 0.81716 0.79687 0.77691 0.74364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.55 71.24 0.61 -1.79 16 2 C 0.16 3.54 6.83 41.41 0.28 3.82 16 3 C -0.17 -4.11 5.98 -19.12 -0.11 -4.22 16 4 C 0.56 16.60 7.68 86.69 0.67 17.27 16 5 O -0.57 -20.06 13.22 -4.02 -0.05 -20.11 16 6 N -0.71 -20.54 5.51 -466.27 -2.57 -23.11 16 7 C 0.15 5.55 5.61 86.38 0.48 6.04 16 8 C -0.01 -0.61 4.16 29.85 0.12 -0.48 16 9 C -0.54 -29.78 9.66 25.60 0.25 -29.54 16 10 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 11 C 0.00 0.18 5.47 84.65 0.46 0.65 16 12 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 13 Si 0.96 41.01 27.47 68.60 1.88 42.89 16 14 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 15 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 17 C -0.11 -1.84 9.72 23.80 0.23 -1.61 16 18 C -0.08 -1.17 10.09 22.38 0.23 -0.95 16 19 C -0.01 -0.21 6.78 38.81 0.26 0.05 16 20 C -0.03 -0.48 12.00 84.37 1.01 0.53 16 21 N -0.48 -10.48 11.19 -197.51 -2.21 -12.69 16 22 C 0.15 2.82 12.09 179.91 2.17 4.99 16 23 N -0.38 -7.95 2.94 -336.61 -0.99 -8.94 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 2.53 5.78 -2.39 -0.01 2.52 16 26 H 0.09 1.26 7.15 -2.39 -0.02 1.24 16 27 H 0.41 9.23 6.61 -92.71 -0.61 8.62 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.51 7.20 -2.39 -0.02 1.50 16 31 H 0.04 1.42 7.57 -2.39 -0.02 1.40 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.17 2.01 6.63 -2.91 -0.02 1.99 16 34 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.24 2.68 7.55 -2.91 -0.02 2.66 16 Total: -1.00 -72.81 304.97 3.48 -69.33 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.45 Total: 16.02 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 6.67 Total: -5.24 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -5.47 Total: -102.90 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.88 Total: 42.89 kcal Total: -72.81 3.48 -69.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325255456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.615 kcal (2) G-P(sol) polarization free energy of solvation -72.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds