Wall clock time and date at job start Mon Mar 30 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99871 * 2 1 4 4 N 1.46499 * 109.47294 * 126.55521 * 3 2 1 5 5 C 1.46496 * 119.99858 * 277.17669 * 4 3 2 6 6 C 1.50706 * 109.47151 * 269.99622 * 5 4 3 7 7 H 1.07995 * 119.99849 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99738 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99904 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99710 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47416 * 89.99756 * 10 8 6 12 12 H 1.48494 * 109.46952 * 209.99921 * 10 8 6 13 13 H 1.48506 * 109.47118 * 329.99859 * 10 8 6 14 14 C 1.34780 * 119.99912 * 97.17475 * 4 3 2 15 15 O 1.21278 * 119.99880 * 177.60882 * 14 4 3 16 16 C 1.50698 * 119.99909 * 357.61372 * 14 4 3 17 17 C 1.53004 * 115.55071 * 84.54724 * 16 14 4 18 18 C 1.53007 * 109.47089 * 63.03409 * 17 16 14 19 19 F 1.39897 * 109.47340 * 183.03640 * 17 16 14 20 20 F 1.39904 * 109.46988 * 303.03852 * 17 16 14 21 21 C 1.53002 * 117.50004 * 230.21477 * 16 14 4 22 22 C 1.52995 * 117.50136 * 298.87817 * 16 14 4 23 23 H 1.07995 * 120.00005 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99890 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00005 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47168 * 6.55187 * 3 2 1 27 27 H 1.09001 * 109.46956 * 246.55254 * 3 2 1 28 28 H 1.08992 * 109.47224 * 30.00339 * 5 4 3 29 29 H 1.09006 * 109.46752 * 150.00254 * 5 4 3 30 30 H 0.97006 * 119.99526 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46934 * 184.05954 * 18 17 16 32 32 H 1.09005 * 109.46854 * 304.05761 * 18 17 16 33 33 H 1.08997 * 109.46927 * 64.06229 * 18 17 16 34 34 H 1.08998 * 117.49792 * 215.00822 * 21 16 14 35 35 H 1.08997 * 117.49387 * 0.02562 * 21 16 14 36 36 H 1.08996 * 117.49627 * 359.97279 * 22 16 14 37 37 H 1.09001 * 117.50308 * 144.97799 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0201 1.3167 1.1095 5 6 2.5752 1.6830 2.4564 6 6 2.7214 3.1708 2.6465 7 1 3.1067 3.7824 1.8441 8 6 2.3631 3.7511 3.8448 9 7 1.8935 3.0063 4.8217 10 14 2.5436 5.5954 4.0802 11 1 1.2901 6.2729 3.6621 12 1 2.8108 5.8879 5.5113 13 1 3.6736 6.0916 3.2542 14 6 4.3094 0.9905 0.8910 15 8 5.1104 1.0420 1.8003 16 6 4.7558 0.5618 -0.4830 17 6 5.1058 1.6970 -1.4472 18 6 6.2989 2.4824 -0.8987 19 9 5.4346 1.1623 -2.6975 20 9 4.0062 2.5517 -1.5801 21 6 5.5656 -0.7319 -0.5912 22 6 4.1136 -0.6946 -1.0745 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3609 2.1302 0.1173 27 1 2.5993 1.4153 -0.9428 28 1 1.5299 1.4014 2.5828 29 1 3.1840 1.1608 3.1946 30 1 1.6411 3.4147 5.6646 31 1 6.5028 3.3338 -1.5480 32 1 6.0688 2.8383 0.1056 33 1 7.1748 1.8347 -0.8630 34 1 6.3477 -0.7741 -1.3492 35 1 5.7750 -1.2730 0.3315 36 1 3.3685 -1.2114 -0.4696 37 1 3.9401 -0.7124 -2.1504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329309236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:19 Heat of formation + Delta-G solvation = -81.566471 kcal Electronic energy + Delta-G solvation = -22569.267035 eV Core-core repulsion = 18984.338227 eV Total energy + Delta-G solvation = -3584.928807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.99922 -46.97424 -39.69451 -36.40155 -35.70847 -33.15072 -32.05305 -31.16473 -27.85537 -25.64079 -24.82527 -23.25444 -22.65983 -21.21555 -19.96311 -18.29643 -17.52598 -17.27748 -16.46118 -16.21787 -15.82313 -15.55823 -14.64527 -14.31127 -14.05671 -13.97834 -13.69106 -13.26331 -13.21022 -12.83100 -12.70657 -12.42254 -12.17033 -12.06137 -11.79473 -11.59329 -11.32517 -11.26360 -10.97796 -10.87873 -10.65360 -10.46722 -10.27766 -10.13137 -9.64730 -9.10679 -9.04016 -8.43873 -7.73248 -6.04881 -4.09271 2.48942 3.00734 3.30349 3.36722 3.38463 3.41551 3.74997 3.89048 4.17262 4.41058 4.48460 4.57467 4.78307 4.97219 5.08373 5.26249 5.29828 5.36632 5.49240 5.57839 5.61914 5.73429 5.81159 5.86679 6.02414 6.06887 6.10526 6.30570 6.84272 6.93441 7.06995 7.39569 7.51022 7.91283 8.21854 8.33537 8.84355 9.00566 9.55514 11.03342 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.007108 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.093441 B = 3938.001312 C = 4560.548830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.169 4.169 3 C 0.123 3.877 4 N -0.578 5.578 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.527 6.527 16 C -0.212 4.212 17 C 0.334 3.666 18 C -0.189 4.189 19 F -0.199 7.199 20 F -0.187 7.187 21 C -0.129 4.129 22 C -0.157 4.157 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 -6.509 -14.052 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C -0.001 4.001 4 N -0.307 5.307 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.330 3.670 15 O -0.404 6.404 16 C -0.216 4.216 17 C 0.297 3.703 18 C -0.247 4.247 19 F -0.180 7.180 20 F -0.167 7.167 21 C -0.166 4.166 22 C -0.194 4.194 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.514 -6.428 -13.370 15.246 hybrid contribution -0.201 1.073 0.058 1.094 sum 3.313 -5.354 -13.312 14.726 Atomic orbital electron populations 1.23812 0.95844 1.01720 1.00766 1.23565 0.96353 0.99060 0.99807 1.20906 0.92828 0.95108 0.91209 1.48146 1.06765 1.64302 1.11509 1.19326 0.95544 0.95849 0.76437 1.21415 1.43106 0.92491 0.99378 0.92338 1.24925 0.95091 0.98415 0.95626 1.69935 1.43522 1.35427 1.04465 0.86504 0.78432 0.85170 0.77383 1.20627 1.21098 1.19855 1.18765 0.83060 0.78524 0.86654 1.90690 1.52269 1.53297 1.44130 1.22473 1.10704 0.91087 0.97343 1.20057 0.85098 0.85953 0.79181 1.22712 0.96393 1.01120 1.04464 1.92976 1.92852 1.87218 1.44910 1.92973 1.55995 1.71674 1.96096 1.23032 0.94806 0.94945 1.03806 1.23413 0.96878 0.97036 1.02032 0.88325 0.88790 0.87527 0.89751 0.89053 0.94691 0.93924 0.92728 0.90122 0.88285 0.89196 0.87451 0.87165 0.86966 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 14.32 29.01 0.42 -2.08 16 2 C -0.17 -2.52 9.03 -36.03 -0.33 -2.84 16 3 C 0.12 2.16 5.08 -5.20 -0.03 2.13 16 4 N -0.58 -12.37 2.45 -176.44 -0.43 -12.80 16 5 C 0.25 6.47 5.15 -5.19 -0.03 6.44 16 6 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 10 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.55 11.28 5.95 -10.99 -0.07 11.21 16 15 O -0.53 -12.92 16.47 5.56 0.09 -12.83 16 16 C -0.21 -3.29 0.75 -155.66 -0.12 -3.41 16 17 C 0.33 4.99 2.06 -26.73 -0.05 4.93 16 18 C -0.19 -2.64 9.29 37.16 0.35 -2.29 16 19 F -0.20 -2.69 15.64 2.25 0.04 -2.66 16 20 F -0.19 -3.11 14.18 2.25 0.03 -3.08 16 21 C -0.13 -1.61 9.65 -26.69 -0.26 -1.87 16 22 C -0.16 -1.94 7.94 -26.69 -0.21 -2.16 16 23 H 0.10 1.34 7.85 -52.49 -0.41 0.92 16 24 H 0.09 1.09 8.06 -52.48 -0.42 0.66 16 25 H 0.11 1.45 5.46 -52.49 -0.29 1.17 16 26 H 0.08 1.56 7.78 -51.93 -0.40 1.15 16 27 H 0.09 1.48 3.81 -51.93 -0.20 1.29 16 28 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.04 1.25 7.46 -51.93 -0.39 0.86 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.66 7.37 -51.93 -0.38 1.28 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.11 1.12 7.87 -51.93 -0.41 0.71 16 35 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.11 1.38 5.26 -51.93 -0.27 1.11 16 37 H 0.11 1.18 7.69 -51.93 -0.40 0.78 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -31.74 314.15 -5.37 -37.12 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.81 Total: 1.90 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.74 Total: -3.49 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.30 Total: -38.61 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.07 Total: -5.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.74 -5.37 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329309236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.448 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds