Wall clock time and date at job start Mon Mar 30 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99871 * 2 1 4 4 N 1.46499 * 109.47294 * 126.55521 * 3 2 1 5 5 C 1.46496 * 119.99858 * 277.17669 * 4 3 2 6 6 C 1.50706 * 109.47151 * 269.99622 * 5 4 3 7 7 H 1.07995 * 119.99849 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99738 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99904 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99710 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47416 * 89.99756 * 10 8 6 12 12 H 1.48494 * 109.46952 * 209.99921 * 10 8 6 13 13 H 1.48506 * 109.47118 * 329.99859 * 10 8 6 14 14 C 1.34780 * 119.99912 * 97.17475 * 4 3 2 15 15 O 1.21278 * 119.99880 * 177.60882 * 14 4 3 16 16 C 1.50698 * 119.99909 * 357.61372 * 14 4 3 17 17 C 1.53004 * 115.55071 * 84.54724 * 16 14 4 18 18 C 1.53007 * 109.47089 * 63.03409 * 17 16 14 19 19 F 1.39897 * 109.47340 * 183.03640 * 17 16 14 20 20 F 1.39904 * 109.46988 * 303.03852 * 17 16 14 21 21 C 1.53002 * 117.50004 * 230.21477 * 16 14 4 22 22 C 1.52995 * 117.50136 * 298.87817 * 16 14 4 23 23 H 1.07995 * 120.00005 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99890 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00005 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47168 * 6.55187 * 3 2 1 27 27 H 1.09001 * 109.46956 * 246.55254 * 3 2 1 28 28 H 1.08992 * 109.47224 * 30.00339 * 5 4 3 29 29 H 1.09006 * 109.46752 * 150.00254 * 5 4 3 30 30 H 0.97006 * 119.99526 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46934 * 184.05954 * 18 17 16 32 32 H 1.09005 * 109.46854 * 304.05761 * 18 17 16 33 33 H 1.08997 * 109.46927 * 64.06229 * 18 17 16 34 34 H 1.08998 * 117.49792 * 215.00822 * 21 16 14 35 35 H 1.08997 * 117.49387 * 0.02562 * 21 16 14 36 36 H 1.08996 * 117.49627 * 359.97279 * 22 16 14 37 37 H 1.09001 * 117.50308 * 144.97799 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0201 1.3167 1.1095 5 6 2.5752 1.6830 2.4564 6 6 2.7214 3.1708 2.6465 7 1 3.1067 3.7824 1.8441 8 6 2.3631 3.7511 3.8448 9 7 1.8935 3.0063 4.8217 10 14 2.5436 5.5954 4.0802 11 1 1.2901 6.2729 3.6621 12 1 2.8108 5.8879 5.5113 13 1 3.6736 6.0916 3.2542 14 6 4.3094 0.9905 0.8910 15 8 5.1104 1.0420 1.8003 16 6 4.7558 0.5618 -0.4830 17 6 5.1058 1.6970 -1.4472 18 6 6.2989 2.4824 -0.8987 19 9 5.4346 1.1623 -2.6975 20 9 4.0062 2.5517 -1.5801 21 6 5.5656 -0.7319 -0.5912 22 6 4.1136 -0.6946 -1.0745 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3609 2.1302 0.1173 27 1 2.5993 1.4153 -0.9428 28 1 1.5299 1.4014 2.5828 29 1 3.1840 1.1608 3.1946 30 1 1.6411 3.4147 5.6646 31 1 6.5028 3.3338 -1.5480 32 1 6.0688 2.8383 0.1056 33 1 7.1748 1.8347 -0.8630 34 1 6.3477 -0.7741 -1.3492 35 1 5.7750 -1.2730 0.3315 36 1 3.3685 -1.2114 -0.4696 37 1 3.9401 -0.7124 -2.1504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329309236.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:19 Heat of formation + Delta-G solvation = -100.373537 kcal Electronic energy + Delta-G solvation = -22570.082570 eV Core-core repulsion = 18984.338227 eV Total energy + Delta-G solvation = -3585.744343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.17985 -48.15572 -41.21093 -37.72020 -37.30057 -35.07066 -33.71391 -32.27797 -29.83814 -27.05005 -26.36681 -24.92041 -23.67568 -22.77387 -21.17902 -19.65363 -18.98606 -18.66077 -18.37771 -17.49610 -17.31712 -16.99643 -16.42134 -15.78161 -15.50872 -15.38099 -14.85452 -14.52721 -14.43940 -14.33328 -14.17213 -13.99434 -13.54752 -13.38784 -13.26075 -13.07509 -12.92848 -12.65966 -12.60327 -12.53882 -12.27210 -12.07843 -11.70750 -11.58611 -11.39731 -10.70979 -10.65900 -10.29189 -9.53339 -8.24613 -6.38791 1.30139 1.34575 1.37094 1.46045 1.51794 2.17703 2.35296 2.44287 2.61495 3.00650 3.05196 3.23399 3.47875 3.49395 3.88529 3.90527 4.07877 4.17000 4.34079 4.46390 4.58450 4.61557 4.67213 4.83911 4.86049 4.93328 4.98774 5.03406 5.10843 5.17921 5.47507 5.69430 5.72811 5.93375 6.03247 6.62472 6.70992 7.21163 7.36711 8.82745 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.018188 B = 0.007108 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.093441 B = 3938.001312 C = 4560.548830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.187 4.187 3 C 0.124 3.876 4 N -0.584 5.584 5 C 0.265 3.735 6 C -0.542 4.542 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.273 1.273 14 C 0.542 3.458 15 O -0.577 6.577 16 C -0.234 4.234 17 C 0.337 3.663 18 C -0.189 4.189 19 F -0.184 7.184 20 F -0.200 7.200 21 C -0.113 4.113 22 C -0.137 4.137 23 H 0.095 0.905 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.023 0.977 29 H 0.001 0.999 30 H 0.268 0.732 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 -6.840 -16.156 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C 0.002 3.998 4 N -0.313 5.313 5 C 0.144 3.856 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.789 3.211 11 H -0.190 1.190 12 H -0.203 1.203 13 H -0.198 1.198 14 C 0.329 3.671 15 O -0.458 6.458 16 C -0.238 4.238 17 C 0.300 3.700 18 C -0.246 4.246 19 F -0.165 7.165 20 F -0.181 7.181 21 C -0.150 4.150 22 C -0.173 4.173 23 H 0.113 0.887 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.041 0.959 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.504 -6.773 -15.520 17.292 hybrid contribution -0.236 1.130 0.710 1.355 sum 3.267 -5.643 -14.810 16.182 Atomic orbital electron populations 1.24062 0.95467 1.02924 0.98173 1.23475 0.96816 0.98188 1.02076 1.21031 0.92165 0.96326 0.90295 1.48120 1.08193 1.64315 1.10674 1.18739 0.93882 0.94441 0.78497 1.21644 1.43337 0.93553 0.99547 0.93187 1.25814 0.94493 1.03367 0.95201 1.70044 1.44041 1.37485 1.04953 0.85456 0.78872 0.79273 0.77496 1.18958 1.20347 1.19784 1.19527 0.82023 0.77111 0.88411 1.90646 1.53389 1.55213 1.46507 1.22234 1.14280 0.92684 0.94633 1.20000 0.84865 0.85576 0.79522 1.22712 0.96862 1.02302 1.02718 1.92998 1.92679 1.86989 1.43835 1.92946 1.56807 1.72158 1.96189 1.23212 0.95810 0.91750 1.04243 1.23581 0.96846 0.93638 1.03279 0.88660 0.86036 0.85936 0.91408 0.87533 0.95877 0.98085 0.92343 0.88154 0.91815 0.87126 0.84538 0.87882 0.86894 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.19 -5.34 9.03 25.64 0.23 -5.11 16 3 C 0.12 4.35 5.08 85.63 0.43 4.79 16 4 N -0.58 -25.83 2.45 -830.51 -2.03 -27.86 16 5 C 0.27 14.59 5.15 85.64 0.44 15.04 16 6 C -0.54 -31.89 9.39 25.60 0.24 -31.65 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 8 C 0.01 0.61 5.46 84.66 0.46 1.07 16 9 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 10 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 11 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.54 22.98 5.95 87.66 0.52 23.50 16 15 O -0.58 -29.67 16.47 -3.02 -0.05 -29.72 16 16 C -0.23 -7.01 0.75 -52.93 -0.04 -7.04 16 17 C 0.34 9.51 2.06 30.60 0.06 9.58 16 18 C -0.19 -5.07 9.29 71.98 0.67 -4.40 16 19 F -0.18 -4.38 15.64 44.97 0.70 -3.68 16 20 F -0.20 -6.49 14.18 44.97 0.64 -5.85 16 21 C -0.11 -2.55 9.65 30.62 0.30 -2.26 16 22 C -0.14 -3.01 7.94 30.62 0.24 -2.76 16 23 H 0.10 2.47 7.85 -2.91 -0.02 2.45 16 24 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 25 H 0.12 3.10 5.46 -2.91 -0.02 3.08 16 26 H 0.07 2.56 7.78 -2.39 -0.02 2.54 16 27 H 0.11 3.38 3.81 -2.39 -0.01 3.37 16 28 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 29 H 0.00 0.07 7.46 -2.38 -0.02 0.05 16 30 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 31 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.19 7.37 -2.38 -0.02 2.17 16 33 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.14 2.30 7.87 -2.39 -0.02 2.28 16 35 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.11 2.49 5.26 -2.39 -0.01 2.48 16 37 H 0.13 2.31 7.69 -2.39 -0.02 2.30 16 Total: -1.00 -71.49 314.15 7.18 -64.32 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.07 Total: 13.80 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 4.53 Total: -2.56 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.75 Total: -83.84 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 1.34 Total: -9.53 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.49 7.18 -64.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329309236.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.058 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds