Wall clock time and date at job start Mon Mar 30 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30001 * 126.20696 * 2 1 4 4 O 1.21278 * 110.49146 * 179.68331 * 3 2 1 5 5 C 1.34057 * 109.74532 * 0.46983 * 4 3 2 6 6 N 1.37367 * 126.66452 * 179.80311 * 5 4 3 7 7 C 1.46509 * 120.00123 * 354.58987 * 6 5 4 8 8 H 1.09002 * 109.46962 * 2.24815 * 7 6 5 9 9 C 1.52995 * 109.47241 * 122.25045 * 7 6 5 10 10 C 1.50710 * 109.47146 * 294.42388 * 9 7 6 11 11 H 1.07996 * 119.99453 * 1.77802 * 10 9 7 12 12 C 1.37875 * 119.99852 * 181.77656 * 10 9 7 13 13 N 1.31514 * 120.00076 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99643 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47271 * 89.99974 * 14 12 10 16 16 H 1.48501 * 109.47103 * 210.00095 * 14 12 10 17 17 H 1.48499 * 109.47337 * 329.99687 * 14 12 10 18 18 C 1.50704 * 109.47002 * 242.25184 * 7 6 5 19 19 C 1.38235 * 119.99755 * 139.99965 * 18 7 6 20 20 C 1.38236 * 119.99654 * 179.97438 * 19 18 7 21 21 C 1.38240 * 120.00000 * 0.02562 * 20 19 18 22 22 C 1.38228 * 119.99872 * 0.06362 * 21 20 19 23 23 C 1.38230 * 119.99830 * 319.97250 * 18 7 6 24 24 N 1.32139 * 106.66611 * 359.53802 * 5 4 3 25 25 H 1.08998 * 109.47236 * 270.02484 * 1 2 3 26 26 H 1.09000 * 109.47109 * 30.03076 * 1 2 3 27 27 H 1.09000 * 109.46836 * 150.02584 * 1 2 3 28 28 H 0.96999 * 120.00097 * 174.59120 * 6 5 4 29 29 H 1.08999 * 109.47439 * 54.41904 * 9 7 6 30 30 H 1.09001 * 109.47401 * 174.42496 * 9 7 6 31 31 H 0.97001 * 119.99295 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.99852 * 359.97438 * 19 18 7 33 33 H 1.08002 * 119.99566 * 179.71901 * 20 19 18 34 34 H 1.07996 * 119.99476 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.99704 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.00284 * 359.97438 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0490 0.0000 4 8 3.4424 0.7205 0.0063 5 6 3.5367 -0.6168 0.0007 6 7 4.6935 -1.3575 0.0012 7 6 5.9919 -0.6883 -0.1112 8 1 5.8427 0.3909 -0.1449 9 6 6.8566 -1.0461 1.0991 10 6 6.2345 -0.4751 2.3474 11 1 5.2995 0.0621 2.2875 12 6 6.8589 -0.6387 3.5657 13 7 7.9972 -1.2933 3.6386 14 14 6.0873 0.0684 5.1130 15 1 5.1833 -0.9407 5.7210 16 1 7.1559 0.4230 6.0814 17 1 5.3095 1.2851 4.7668 18 6 6.6821 -1.1396 -1.3727 19 6 7.3813 -0.2284 -2.1418 20 6 8.0148 -0.6425 -3.2986 21 6 7.9485 -1.9677 -3.6865 22 6 7.2477 -2.8784 -2.9183 23 6 6.6162 -2.4648 -1.7602 24 7 2.3006 -1.0838 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 4.6507 -2.3237 0.0760 29 1 6.9239 -2.1302 1.1900 30 1 7.8555 -0.6298 0.9680 31 1 8.4366 -1.4080 4.4958 32 1 7.4327 0.8070 -1.8389 33 1 8.5573 0.0704 -3.9019 34 1 8.4431 -2.2910 -4.5905 35 1 7.1963 -3.9138 -3.2212 36 1 6.0706 -3.1769 -1.1589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336556709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:13 Heat of formation + Delta-G solvation = 90.841087 kcal Electronic energy + Delta-G solvation = -20479.847844 eV Core-core repulsion = 17353.084375 eV Total energy + Delta-G solvation = -3126.763468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.72255 -39.30446 -36.62678 -35.37285 -33.27350 -32.17344 -30.73446 -30.17090 -28.81477 -28.51994 -25.05852 -23.31167 -22.40304 -22.14926 -21.45792 -19.81772 -17.88180 -17.52005 -17.03403 -16.25491 -16.02855 -15.07419 -14.89986 -14.62389 -13.91349 -13.45466 -13.39465 -13.21523 -13.14057 -12.85053 -12.66094 -12.23077 -11.93851 -11.68979 -11.30426 -11.21162 -11.05536 -10.83348 -10.68705 -10.50973 -10.36310 -10.27856 -9.79235 -9.31269 -8.70161 -8.50824 -8.40444 -7.83674 -6.12502 -4.15867 1.56616 1.62490 1.96570 2.71173 2.92421 3.26949 3.33706 3.38758 3.86772 4.06817 4.38035 4.45822 4.96615 5.07777 5.09083 5.19251 5.24880 5.33291 5.53663 5.62351 5.67359 5.70958 5.74933 5.91694 6.16281 6.23248 6.30724 6.38074 6.49677 6.66248 6.69271 6.82076 7.09644 7.21485 7.36531 7.56864 7.67259 7.83958 8.18977 8.88042 8.91946 9.49619 10.97979 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.008279 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.813986 B = 3381.368352 C = 5691.202798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.412 5.412 4 O 0.031 5.969 5 C 0.455 3.545 6 N -0.636 5.636 7 C 0.186 3.814 8 H 0.095 0.905 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.063 3.937 13 N -0.891 5.891 14 Si 0.889 3.111 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.081 4.081 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.106 4.106 24 N -0.560 5.560 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.425 0.575 29 H 0.026 0.974 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 -0.944 -12.130 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 N -0.138 5.138 4 O -0.012 6.012 5 C 0.146 3.854 6 N -0.284 5.284 7 C 0.082 3.918 8 H 0.113 0.887 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.082 4.082 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.125 4.125 24 N -0.308 5.308 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.265 0.735 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.443 -0.334 -12.007 13.188 hybrid contribution 0.006 -0.186 1.105 1.120 sum -5.436 -0.520 -10.903 12.194 Atomic orbital electron populations 1.20015 0.83910 1.03840 1.03726 1.25326 0.99682 0.84131 0.99163 1.74491 0.88653 1.22884 1.27806 1.85330 1.22525 1.22334 1.71006 1.24165 0.88858 0.81764 0.90649 1.43454 0.99988 1.08286 1.76666 1.20555 0.80840 0.97005 0.93443 0.88737 1.19500 0.94666 0.97963 0.89473 1.21047 1.07461 1.35640 0.91696 0.92737 1.24934 0.94801 0.95104 0.99057 1.69947 1.16368 1.41145 1.25517 0.86622 0.79001 0.79629 0.83034 1.20642 1.21052 1.19787 1.20400 0.97874 0.93986 0.95957 1.21033 0.97691 0.99615 0.94503 1.21072 0.99864 0.96001 0.96926 1.21062 1.00141 0.93692 0.99933 1.21072 0.98138 0.99330 0.95339 1.20903 0.99562 0.95387 0.96623 1.72237 0.97376 1.27576 1.33647 0.89830 0.90084 0.89604 0.73471 0.95530 0.94217 0.92804 0.85826 0.86323 0.86580 0.86384 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 36.01 0.38 -0.29 16 2 C 0.19 3.32 8.20 -156.48 -1.28 2.03 16 3 N -0.41 -7.94 12.14 31.15 0.38 -7.56 16 4 O 0.03 0.63 10.53 17.04 0.18 0.81 16 5 C 0.45 8.74 9.09 -87.55 -0.80 7.94 16 6 N -0.64 -11.40 4.40 -57.11 -0.25 -11.65 16 7 C 0.19 3.45 2.55 -69.08 -0.18 3.28 16 8 H 0.09 1.82 7.14 -51.93 -0.37 1.44 16 9 C 0.02 0.50 4.63 -27.88 -0.13 0.37 16 10 C -0.52 -13.77 8.85 -34.44 -0.30 -14.07 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.08 -1.32 4.95 -104.62 -0.52 -1.84 16 19 C -0.11 -1.64 9.67 -39.58 -0.38 -2.02 16 20 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 21 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.12 -1.58 10.05 -39.59 -0.40 -1.97 16 23 C -0.11 -1.58 9.32 -39.58 -0.37 -1.95 16 24 N -0.56 -10.48 11.59 -13.05 -0.15 -10.63 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.42 6.96 7.86 -40.82 -0.32 6.64 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.12 1.71 8.04 -52.49 -0.42 1.29 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.12 1.64 7.00 -52.49 -0.37 1.27 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -30.74 317.16 -8.63 -39.37 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.40 Total: 3.99 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -4.87 Total: -10.86 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.71 Total: -54.60 kcal Atomic # 8 Polarization: 0.63 SS G_CDS: 0.18 Total: 0.81 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.74 -8.63 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336556709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.207 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds