Wall clock time and date at job start Mon Mar 30 2020 01:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30001 * 126.20696 * 2 1 4 4 O 1.21278 * 110.49146 * 179.68331 * 3 2 1 5 5 C 1.34057 * 109.74532 * 0.46983 * 4 3 2 6 6 N 1.37367 * 126.66452 * 179.80311 * 5 4 3 7 7 C 1.46509 * 120.00123 * 354.58987 * 6 5 4 8 8 H 1.09002 * 109.46962 * 2.24815 * 7 6 5 9 9 C 1.52995 * 109.47241 * 122.25045 * 7 6 5 10 10 C 1.50710 * 109.47146 * 294.42388 * 9 7 6 11 11 H 1.07996 * 119.99453 * 1.77802 * 10 9 7 12 12 C 1.37875 * 119.99852 * 181.77656 * 10 9 7 13 13 N 1.31514 * 120.00076 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99643 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47271 * 89.99974 * 14 12 10 16 16 H 1.48501 * 109.47103 * 210.00095 * 14 12 10 17 17 H 1.48499 * 109.47337 * 329.99687 * 14 12 10 18 18 C 1.50704 * 109.47002 * 242.25184 * 7 6 5 19 19 C 1.38235 * 119.99755 * 139.99965 * 18 7 6 20 20 C 1.38236 * 119.99654 * 179.97438 * 19 18 7 21 21 C 1.38240 * 120.00000 * 0.02562 * 20 19 18 22 22 C 1.38228 * 119.99872 * 0.06362 * 21 20 19 23 23 C 1.38230 * 119.99830 * 319.97250 * 18 7 6 24 24 N 1.32139 * 106.66611 * 359.53802 * 5 4 3 25 25 H 1.08998 * 109.47236 * 270.02484 * 1 2 3 26 26 H 1.09000 * 109.47109 * 30.03076 * 1 2 3 27 27 H 1.09000 * 109.46836 * 150.02584 * 1 2 3 28 28 H 0.96999 * 120.00097 * 174.59120 * 6 5 4 29 29 H 1.08999 * 109.47439 * 54.41904 * 9 7 6 30 30 H 1.09001 * 109.47401 * 174.42496 * 9 7 6 31 31 H 0.97001 * 119.99295 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.99852 * 359.97438 * 19 18 7 33 33 H 1.08002 * 119.99566 * 179.71901 * 20 19 18 34 34 H 1.07996 * 119.99476 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.99704 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.00284 * 359.97438 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0490 0.0000 4 8 3.4424 0.7205 0.0063 5 6 3.5367 -0.6168 0.0007 6 7 4.6935 -1.3575 0.0012 7 6 5.9919 -0.6883 -0.1112 8 1 5.8427 0.3909 -0.1449 9 6 6.8566 -1.0461 1.0991 10 6 6.2345 -0.4751 2.3474 11 1 5.2995 0.0621 2.2875 12 6 6.8589 -0.6387 3.5657 13 7 7.9972 -1.2933 3.6386 14 14 6.0873 0.0684 5.1130 15 1 5.1833 -0.9407 5.7210 16 1 7.1559 0.4230 6.0814 17 1 5.3095 1.2851 4.7668 18 6 6.6821 -1.1396 -1.3727 19 6 7.3813 -0.2284 -2.1418 20 6 8.0148 -0.6425 -3.2986 21 6 7.9485 -1.9677 -3.6865 22 6 7.2477 -2.8784 -2.9183 23 6 6.6162 -2.4648 -1.7602 24 7 2.3006 -1.0838 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 4.6507 -2.3237 0.0760 29 1 6.9239 -2.1302 1.1900 30 1 7.8555 -0.6298 0.9680 31 1 8.4366 -1.4080 4.4958 32 1 7.4327 0.8070 -1.8389 33 1 8.5573 0.0704 -3.9019 34 1 8.4431 -2.2910 -4.5905 35 1 7.1963 -3.9138 -3.2212 36 1 6.0706 -3.1769 -1.1589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336556709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:12 Heat of formation + Delta-G solvation = 72.158606 kcal Electronic energy + Delta-G solvation = -20480.657977 eV Core-core repulsion = 17353.084375 eV Total energy + Delta-G solvation = -3127.573602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.15690 -40.50439 -38.02439 -36.77405 -35.15597 -33.72422 -31.82612 -31.37847 -30.47035 -29.78969 -26.78101 -24.72001 -23.86658 -23.49854 -22.73834 -21.19666 -19.35381 -18.99684 -18.59543 -17.94301 -17.34443 -16.67642 -16.31477 -16.03190 -15.19799 -14.71009 -14.68457 -14.54535 -14.33195 -14.19573 -13.77076 -13.64663 -13.48443 -13.06768 -13.00828 -12.92028 -12.61403 -12.47299 -12.14592 -11.91794 -11.81956 -11.80405 -11.47721 -11.20860 -10.62817 -9.76752 -9.59238 -9.32349 -8.24671 -6.33152 0.44352 0.50885 0.55731 1.26375 1.33089 1.35098 1.44862 1.51690 2.35150 2.47793 2.94989 3.09837 3.23519 3.65991 3.82259 3.97109 4.20298 4.29594 4.34613 4.59918 4.63748 4.67301 4.70718 4.72629 4.77796 5.04566 5.10026 5.19859 5.21071 5.35016 5.38876 5.59296 5.62953 5.65416 5.72465 5.93254 6.12143 6.16534 6.26104 6.78501 7.34975 7.46211 8.85815 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.009850 B = 0.008279 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.813986 B = 3381.368352 C = 5691.202798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.195 3.805 3 N -0.434 5.434 4 O 0.007 5.993 5 C 0.447 3.553 6 N -0.630 5.630 7 C 0.203 3.797 8 H 0.083 0.917 9 C 0.033 3.967 10 C -0.528 4.528 11 H 0.045 0.955 12 C 0.015 3.985 13 N -0.921 5.921 14 Si 0.945 3.055 15 H -0.276 1.276 16 H -0.277 1.277 17 H -0.275 1.275 18 C -0.104 4.104 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.120 4.120 24 N -0.569 5.569 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.430 0.570 29 H 0.012 0.988 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 -1.361 -13.423 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 N -0.164 5.164 4 O -0.032 6.032 5 C 0.138 3.862 6 N -0.279 5.279 7 C 0.099 3.901 8 H 0.101 0.899 9 C -0.005 4.005 10 C -0.566 4.566 11 H 0.063 0.937 12 C -0.184 4.184 13 N -0.561 5.561 14 Si 0.771 3.229 15 H -0.202 1.202 16 H -0.202 1.202 17 H -0.200 1.200 18 C -0.106 4.106 19 C -0.145 4.145 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.139 4.139 24 N -0.319 5.319 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.272 0.728 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.181 -0.758 -13.305 14.690 hybrid contribution 0.228 -0.085 1.434 1.455 sum -5.953 -0.843 -11.871 13.307 Atomic orbital electron populations 1.20316 0.80075 1.05739 1.05284 1.26341 1.01738 0.83112 0.96743 1.74491 0.88516 1.23753 1.29640 1.85302 1.23332 1.22719 1.71804 1.24393 0.89342 0.81771 0.90740 1.43380 0.99614 1.08471 1.76392 1.20107 0.80527 0.96391 0.93121 0.89920 1.19265 0.94226 0.96466 0.90543 1.21339 1.07017 1.35075 0.93149 0.93703 1.25648 0.95303 0.95608 1.01855 1.70036 1.17481 1.42385 1.26234 0.85745 0.78351 0.78810 0.79971 1.20204 1.20193 1.19978 1.20212 0.99482 0.95239 0.95638 1.21215 0.98155 0.99659 0.95496 1.21421 0.99189 0.97137 0.96155 1.21516 0.98980 0.93150 1.00591 1.21427 0.97273 1.00960 0.94406 1.21064 1.00266 0.94798 0.97741 1.72272 0.97262 1.28265 1.34073 0.88238 0.88151 0.87736 0.72775 0.96971 0.96465 0.92652 0.85752 0.83557 0.83187 0.83687 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.51 71.24 0.75 -0.44 16 2 C 0.19 6.57 8.20 138.50 1.14 7.70 16 3 N -0.43 -16.70 12.14 -58.82 -0.71 -17.41 16 4 O 0.01 0.29 10.53 71.03 0.75 1.04 16 5 C 0.45 17.44 9.09 179.27 1.63 19.07 16 6 N -0.63 -23.21 4.40 -445.60 -1.96 -25.17 16 7 C 0.20 7.85 2.55 44.24 0.11 7.97 16 8 H 0.08 3.35 7.14 -2.39 -0.02 3.34 16 9 C 0.03 1.58 4.63 29.85 0.14 1.72 16 10 C -0.53 -28.71 8.85 25.60 0.23 -28.49 16 11 H 0.04 2.49 7.74 -2.91 -0.02 2.46 16 12 C 0.01 0.83 5.46 84.65 0.46 1.30 16 13 N -0.92 -53.67 13.29 21.45 0.28 -53.39 16 14 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 18 C -0.10 -3.46 4.95 -19.87 -0.10 -3.56 16 19 C -0.13 -3.76 9.67 22.27 0.22 -3.54 16 20 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 21 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 22 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 23 C -0.12 -3.53 9.32 22.27 0.21 -3.32 16 24 N -0.57 -21.10 11.59 -311.98 -3.62 -24.72 16 25 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.43 14.48 7.86 -92.71 -0.73 13.75 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.83 16 32 H 0.12 3.52 8.04 -2.91 -0.02 3.50 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.12 3.34 7.00 -2.91 -0.02 3.32 16 Total: -1.00 -66.83 317.16 2.59 -64.24 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.37 Total: 18.18 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.45 Total: -9.42 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -6.01 Total: -120.69 kcal Atomic # 8 Polarization: 0.29 SS G_CDS: 0.75 Total: 1.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.83 2.59 -64.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336556709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.396 kcal (2) G-P(sol) polarization free energy of solvation -66.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds