Wall clock time and date at job start Mon Mar 30 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27570 * 126.41461 * 2 1 4 4 N 1.39155 * 113.16148 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.43632 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47566 * 270.03013 * 5 4 3 7 7 C 1.38224 * 119.61953 * 95.00173 * 6 5 4 8 8 C 1.38633 * 119.16045 * 179.97438 * 7 6 5 9 9 C 1.38673 * 118.41890 * 359.97438 * 8 7 6 10 10 C 1.38174 * 119.16668 * 0.02562 * 9 8 7 11 11 N 1.31855 * 119.61479 * 274.72915 * 6 5 4 12 12 C 1.34954 * 111.12213 * 0.02562 * 4 3 2 13 13 O 1.21298 * 127.49594 * 180.02562 * 12 4 3 14 14 C 1.51438 * 126.41860 * 179.97438 * 2 1 3 15 15 H 1.09001 * 110.74277 * 61.46223 * 14 2 1 16 16 C 1.53007 * 110.60512 * 298.56363 * 14 2 1 17 17 C 1.50699 * 109.46839 * 179.41974 * 16 14 2 18 18 H 1.07995 * 120.00595 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99666 * 180.02562 * 17 16 14 20 20 N 1.31519 * 120.00273 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46944 * 59.99388 * 21 19 17 23 23 H 1.48498 * 109.47263 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46996 * 299.99853 * 21 19 17 25 25 H 1.09003 * 109.47110 * 0.02584 * 1 2 3 26 26 H 1.08999 * 109.47130 * 120.02017 * 1 2 3 27 27 H 1.08990 * 109.47290 * 240.02400 * 1 2 3 28 28 H 1.09002 * 109.47171 * 30.03098 * 5 4 3 29 29 H 1.08999 * 109.46854 * 150.02708 * 5 4 3 30 30 H 1.07995 * 120.42257 * 359.95783 * 7 6 5 31 31 H 1.07997 * 120.78788 * 180.02562 * 8 7 6 32 32 H 1.07998 * 120.41748 * 179.97438 * 9 8 7 33 33 H 1.08002 * 119.62038 * 179.97438 * 10 9 8 34 34 H 1.09002 * 109.46894 * 299.41619 * 16 14 2 35 35 H 1.08998 * 109.47380 * 59.41745 * 16 14 2 36 36 H 0.97000 * 120.00358 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7021 1.6937 0.0002 6 6 5.0735 2.0315 -1.4207 7 6 4.5091 3.1363 -2.0302 8 6 4.8580 3.4386 -3.3374 9 6 5.7660 2.6148 -3.9854 10 6 6.2887 1.5275 -3.3118 11 7 5.9372 1.2727 -2.0664 12 6 3.8035 -0.6292 0.0004 13 8 4.8579 -1.2289 0.0012 14 6 2.4060 -1.2186 0.0005 15 1 2.2433 -1.8188 -0.8947 16 6 2.1747 -2.0579 1.2588 17 6 3.0704 -3.2693 1.2262 18 1 3.7377 -3.4254 0.3915 19 6 3.0374 -4.1791 2.2617 20 7 2.2245 -3.9895 3.2780 21 14 4.1472 -5.6812 2.2211 22 1 5.5663 -5.2468 2.1702 23 1 3.9228 -6.4957 3.4423 24 1 3.8352 -6.4948 1.0186 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5141 -0.8898 27 1 -0.3633 -0.5134 0.8901 28 1 4.3717 2.5966 0.5138 29 1 5.5699 1.2803 0.5141 30 1 3.8051 3.7561 -1.4949 31 1 4.4334 4.2957 -3.8388 32 1 6.0602 2.8199 -5.0041 33 1 6.9961 0.8808 -3.8097 34 1 2.4036 -1.4604 2.1412 35 1 1.1331 -2.3771 1.2963 36 1 2.2015 -4.6293 4.0067 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337554104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:58 Heat of formation + Delta-G solvation = 52.606287 kcal Electronic energy + Delta-G solvation = -20468.851808 eV Core-core repulsion = 17340.430355 eV Total energy + Delta-G solvation = -3128.421454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78692 -39.99318 -36.66012 -34.58937 -33.06107 -32.46725 -31.47937 -30.31670 -28.65784 -26.49629 -25.29854 -23.57663 -22.64885 -21.77173 -20.03813 -18.94161 -17.06174 -16.65582 -16.26684 -15.98639 -15.78991 -15.01842 -14.60907 -14.33868 -14.10198 -13.64494 -13.39330 -13.25951 -13.06207 -12.89986 -12.28041 -12.22917 -11.91605 -11.89656 -11.47587 -11.33907 -11.15336 -10.80913 -10.56491 -10.21076 -9.96910 -9.52490 -9.43147 -9.40475 -9.12534 -8.67735 -8.31770 -8.08841 -5.99093 -3.99876 0.95086 1.21159 2.23114 2.89572 3.31089 3.40590 3.43099 3.50268 3.84269 4.24051 4.50748 4.52396 4.65215 4.74748 4.82043 4.96213 5.04093 5.37520 5.40516 5.42894 5.52061 5.64270 5.69668 5.78043 5.89827 5.97220 6.04893 6.06231 6.18328 6.40969 6.59403 6.69829 6.89150 7.44988 7.50828 7.98797 8.00068 8.23782 8.33726 8.66241 9.06065 9.64566 11.12200 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.005099 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.145786 B = 5490.045227 C = 6360.295292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.101 3.899 3 N -0.259 5.259 4 N -0.480 5.480 5 C 0.194 3.806 6 C 0.110 3.890 7 C -0.151 4.151 8 C -0.081 4.081 9 C -0.175 4.175 10 C 0.097 3.903 11 N -0.461 5.461 12 C 0.513 3.487 13 O -0.470 6.470 14 C -0.132 4.132 15 H 0.118 0.882 16 C 0.056 3.944 17 C -0.515 4.515 18 H 0.065 0.935 19 C 0.060 3.940 20 N -0.899 5.899 21 Si 0.895 3.105 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.020 0.980 35 H 0.037 0.963 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 15.516 -11.673 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 N -0.066 5.066 4 N -0.302 5.302 5 C 0.071 3.929 6 C -0.029 4.029 7 C -0.171 4.171 8 C -0.107 4.107 9 C -0.195 4.195 10 C -0.060 4.060 11 N -0.170 5.170 12 C 0.300 3.700 13 O -0.338 6.338 14 C -0.156 4.156 15 H 0.136 0.864 16 C 0.017 3.983 17 C -0.553 4.553 18 H 0.083 0.917 19 C -0.141 4.141 20 N -0.539 5.539 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.038 0.962 35 H 0.055 0.945 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.947 15.429 -11.052 19.002 hybrid contribution 0.404 -0.813 -0.513 1.043 sum 1.351 14.616 -11.565 18.687 Atomic orbital electron populations 1.20299 0.85418 1.03404 1.04132 1.25417 0.97228 0.91963 0.94568 1.74449 0.89050 1.27007 1.16050 1.49695 1.02146 1.06179 1.72179 1.20072 0.89073 0.92994 0.90748 1.21708 0.92619 0.91208 0.97402 1.22010 1.00610 0.98639 0.95887 1.21568 0.95844 0.98879 0.94419 1.22162 0.99023 0.96931 1.01391 1.22822 0.97624 0.95167 0.90394 1.67611 1.11983 1.28328 1.09106 1.21372 0.91928 0.81685 0.74994 1.90730 1.31035 1.65467 1.46562 1.22044 0.90914 0.96396 1.06199 0.86445 1.18891 0.98512 0.93239 0.87618 1.21175 1.21910 1.05868 1.06362 0.91685 1.24941 0.95585 0.98306 0.95281 1.69945 1.37806 1.36774 1.09349 0.86594 0.81490 0.82477 0.77152 1.20091 1.21388 1.20178 0.90717 0.89833 0.88948 0.88171 0.87810 0.84544 0.84880 0.84915 0.82789 0.96205 0.94461 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.49 36.00 0.38 -0.54 16 2 C 0.10 1.74 6.93 -78.73 -0.55 1.19 16 3 N -0.26 -4.57 12.02 35.53 0.43 -4.14 16 4 N -0.48 -9.24 3.52 -61.07 -0.22 -9.45 16 5 C 0.19 3.09 6.55 -5.20 -0.03 3.06 16 6 C 0.11 1.66 6.36 -82.59 -0.53 1.14 16 7 C -0.15 -1.81 9.72 -39.44 -0.38 -2.19 16 8 C -0.08 -0.82 10.18 -39.28 -0.40 -1.22 16 9 C -0.17 -1.79 10.11 -39.44 -0.40 -2.19 16 10 C 0.10 1.26 11.18 -17.55 -0.20 1.06 16 11 N -0.46 -7.62 10.27 -9.47 -0.10 -7.72 16 12 C 0.51 11.77 7.56 -10.43 -0.08 11.69 16 13 O -0.47 -12.40 16.61 5.54 0.09 -12.30 16 14 C -0.13 -2.81 3.01 -92.08 -0.28 -3.08 16 15 H 0.12 2.42 8.14 -51.93 -0.42 1.99 16 16 C 0.06 1.41 4.52 -27.88 -0.13 1.28 16 17 C -0.51 -14.85 8.36 -34.44 -0.29 -15.13 16 18 H 0.06 1.93 7.06 -52.49 -0.37 1.56 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 21 Si 0.90 22.65 29.54 -169.99 -5.02 17.63 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.27 8.04 -51.93 -0.42 0.85 16 29 H 0.10 1.75 8.04 -51.93 -0.42 1.33 16 30 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -35.47 319.54 -6.80 -42.27 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.57 Total: -1.66 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.97 Total: -3.29 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.85 Total: -47.46 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.47 -6.80 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337554104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.881 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds