Wall clock time and date at job start Mon Mar 30 2020 01:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38397 * 120.82372 * 2 1 4 4 C 1.39329 * 119.20649 * 180.02562 * 3 2 1 5 5 C 1.48218 * 119.56049 * 179.97438 * 4 3 2 6 6 O 1.21501 * 120.00209 * 6.27581 * 5 4 3 7 7 N 1.34781 * 119.99696 * 186.27828 * 5 4 3 8 8 C 1.46498 * 120.00092 * 5.81140 * 7 5 4 9 9 C 1.46501 * 119.99693 * 185.81219 * 7 5 4 10 10 H 1.09002 * 109.47229 * 359.97438 * 9 7 5 11 11 C 1.53007 * 109.46590 * 239.99741 * 9 7 5 12 12 C 1.50694 * 109.47083 * 120.00186 * 9 7 5 13 13 H 1.08001 * 120.00337 * 35.00166 * 12 9 7 14 14 C 1.37879 * 119.99936 * 215.00369 * 12 9 7 15 15 N 1.31510 * 119.99996 * 184.96428 * 14 12 9 16 16 Si 1.86797 * 119.99916 * 4.96065 * 14 12 9 17 17 H 1.48498 * 109.47457 * 84.92678 * 16 14 12 18 18 H 1.48506 * 109.47207 * 204.92823 * 16 14 12 19 19 H 1.48503 * 109.47112 * 324.92439 * 16 14 12 20 20 N 1.32782 * 120.87638 * 0.25568 * 4 3 2 21 21 C 1.31338 * 121.79709 * 359.47011 * 20 4 3 22 22 C 1.39903 * 120.70650 * 0.52897 * 21 20 4 23 23 C 1.43194 * 120.47009 * 179.76093 * 22 21 20 24 24 N 3.49240 * 81.49442 * 179.97438 * 2 1 3 25 25 H 1.09009 * 109.46542 * 90.00139 * 1 2 3 26 26 H 1.08990 * 109.47149 * 209.99988 * 1 2 3 27 27 H 1.09001 * 109.47080 * 330.00297 * 1 2 3 28 28 H 1.08008 * 120.39395 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47207 * 275.84211 * 8 7 5 30 30 H 1.09001 * 109.47076 * 35.83781 * 8 7 5 31 31 H 1.08996 * 109.47043 * 155.83926 * 8 7 5 32 32 H 1.09004 * 109.46818 * 174.94219 * 11 9 7 33 33 H 1.08999 * 109.46964 * 54.94908 * 11 9 7 34 34 H 1.08995 * 109.47108 * 294.94279 * 11 9 7 35 35 H 0.97003 * 120.00233 * 179.97438 * 15 14 12 36 36 H 1.08002 * 119.64504 * 180.27265 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1885 0.0000 4 6 3.6089 1.1492 -0.0005 5 6 4.3762 2.4173 -0.0011 6 8 3.7960 3.4785 0.1139 7 7 5.7177 2.3931 -0.1293 8 6 6.4054 1.1272 -0.3954 9 6 6.4881 3.6327 -0.0025 10 1 5.8100 4.4636 0.1927 11 6 7.2524 3.8933 -1.3022 12 6 7.4651 3.5026 1.1374 13 1 7.9320 2.5506 1.3424 14 6 7.7629 4.5990 1.9186 15 7 8.6869 4.5111 2.8502 16 14 6.8540 6.2093 1.6536 17 1 5.5793 6.1894 2.4151 18 1 7.6962 7.3369 2.1275 19 1 6.5641 6.3818 0.2074 20 7 4.2579 -0.0092 -0.0061 21 6 3.6223 -1.1586 -0.0010 22 6 2.2240 -1.2017 -0.0005 23 6 1.5362 -2.4576 -0.0001 24 7 0.9905 -3.4540 0.0015 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6961 2.1351 -0.0004 29 1 6.5773 0.6026 0.5445 30 1 5.7895 0.5095 -1.0489 31 1 7.3611 1.3278 -0.8796 32 1 7.7536 4.8594 -1.2414 33 1 6.5544 3.8981 -2.1394 34 1 7.9936 3.1082 -1.4514 35 1 8.8968 5.2825 3.3996 36 1 4.1852 -2.0803 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337671150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:11 Heat of formation + Delta-G solvation = 44.115732 kcal Electronic energy + Delta-G solvation = -20372.367024 eV Core-core repulsion = 17243.577392 eV Total energy + Delta-G solvation = -3128.789632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91973 -38.85853 -36.86583 -35.62372 -34.38231 -32.67386 -31.84567 -30.19325 -28.42252 -26.23903 -25.46809 -25.08299 -23.05604 -21.32111 -19.24808 -18.79474 -17.46895 -17.05106 -16.34292 -15.54240 -15.35652 -14.91534 -14.57652 -14.41171 -13.93699 -13.48864 -13.38229 -13.26526 -13.06857 -12.96056 -12.83849 -12.58286 -12.40530 -12.27528 -12.13427 -11.59790 -11.38931 -11.07446 -10.70696 -10.47817 -9.93988 -9.84346 -9.76250 -9.36768 -9.29344 -9.11311 -8.63165 -7.70814 -6.18924 -4.21340 0.07402 0.91294 2.30921 2.45075 3.20619 3.28945 3.36627 3.40850 3.42908 3.59468 3.86649 4.11596 4.20336 4.35940 4.49575 4.77163 4.95386 5.05211 5.16629 5.21508 5.45548 5.51689 5.63532 5.77281 5.98947 6.14062 6.24012 6.34342 6.40647 6.53678 6.66234 6.89074 7.03425 7.10753 7.37058 7.54010 7.59742 8.06616 8.43852 8.72612 8.85108 9.42773 10.92886 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.004585 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.480703 B = 6105.933844 C = 6434.869176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.001 3.999 3 C -0.120 4.120 4 C 0.129 3.871 5 C 0.548 3.452 6 O -0.548 6.548 7 N -0.559 5.559 8 C 0.095 3.905 9 C 0.220 3.780 10 H 0.065 0.935 11 C -0.147 4.147 12 C -0.525 4.525 13 H 0.080 0.920 14 C 0.080 3.920 15 N -0.889 5.889 16 Si 0.873 3.127 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.262 1.262 20 N -0.448 5.448 21 C 0.151 3.849 22 C -0.081 4.081 23 C 0.263 3.737 24 N -0.412 5.412 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.267 0.733 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 -9.027 -7.628 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.009 4.009 3 C -0.141 4.141 4 C -0.009 4.009 5 C 0.332 3.668 6 O -0.427 6.427 7 N -0.288 5.288 8 C -0.048 4.048 9 C 0.120 3.880 10 H 0.083 0.917 11 C -0.206 4.206 12 C -0.563 4.563 13 H 0.098 0.902 14 C -0.124 4.124 15 N -0.526 5.526 16 Si 0.700 3.300 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.187 1.187 20 N -0.159 5.159 21 C -0.011 4.011 22 C -0.087 4.087 23 C -0.053 4.053 24 N -0.088 5.088 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.176 0.824 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.054 -9.831 -7.422 17.234 hybrid contribution -0.929 1.067 0.127 1.420 sum -12.983 -8.764 -7.296 17.280 Atomic orbital electron populations 1.20954 0.89217 1.04145 1.03730 1.20341 0.97041 0.90997 0.92558 1.21989 0.93835 0.99205 0.99078 1.21869 0.91795 0.93020 0.94216 1.17872 0.82995 0.86607 0.79292 1.90738 1.69367 1.30195 1.52422 1.48347 1.04742 1.11003 1.64670 1.21905 0.96871 0.84726 1.01295 1.19452 0.91010 0.82953 0.94578 0.91733 1.22221 0.99663 1.01561 0.97134 1.21114 1.23825 0.98640 1.12691 0.90181 1.24960 0.94495 0.98733 0.94236 1.69883 1.30576 1.31150 1.21000 0.86917 0.80252 0.83253 0.79612 1.19620 1.21310 1.18691 1.68411 1.38583 0.97516 1.11382 1.23129 0.89112 0.97216 0.91679 1.17076 0.94220 0.87130 1.10277 1.25328 0.93512 0.92587 0.93843 1.81275 1.08144 1.10763 1.08608 0.89537 0.90965 0.89594 0.82389 0.92342 0.90744 0.91984 0.92438 0.95352 0.92906 0.92330 0.81148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.67 36.01 0.35 -0.52 16 2 C 0.00 0.01 5.95 -103.93 -0.62 -0.61 16 3 C -0.12 -1.45 9.32 -39.12 -0.36 -1.82 16 4 C 0.13 1.94 6.57 -82.95 -0.55 1.40 16 5 C 0.55 10.81 7.65 -12.16 -0.09 10.71 16 6 O -0.55 -12.30 15.67 5.36 0.08 -12.22 16 7 N -0.56 -11.48 2.75 -176.24 -0.49 -11.96 16 8 C 0.10 1.61 8.16 59.85 0.49 2.10 16 9 C 0.22 5.17 2.28 -69.08 -0.16 5.01 16 10 H 0.06 1.65 4.06 -51.93 -0.21 1.44 16 11 C -0.15 -3.01 9.07 37.16 0.34 -2.67 16 12 C -0.52 -14.14 8.82 -34.44 -0.30 -14.44 16 13 H 0.08 2.30 7.67 -52.49 -0.40 1.90 16 14 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 15 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 16 Si 0.87 21.57 26.99 -169.99 -4.59 16.98 16 17 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.26 -6.22 6.81 56.52 0.39 -5.84 16 20 N -0.45 -5.94 6.13 -9.47 -0.06 -6.00 16 21 C 0.15 1.51 10.92 -17.14 -0.19 1.33 16 22 C -0.08 -0.78 5.75 -106.72 -0.61 -1.39 16 23 C 0.26 2.66 13.95 -22.48 -0.31 2.35 16 24 N -0.41 -4.93 18.54 41.84 0.78 -4.15 16 25 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.07 0.51 7.18 -51.93 -0.37 0.14 16 27 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.16 1.83 7.64 -52.48 -0.40 1.43 16 29 H 0.06 1.02 7.97 -51.93 -0.41 0.60 16 30 H 0.07 1.07 5.82 -51.93 -0.30 0.77 16 31 H 0.06 1.03 6.54 -51.93 -0.34 0.69 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 1.01 6.87 -51.93 -0.36 0.65 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -31.91 311.29 -4.99 -36.90 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.06 Total: -2.29 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -2.12 Total: 3.58 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 1.01 Total: -47.65 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.59 Total: 16.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.91 -4.99 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337671150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.016 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds