Wall clock time and date at job start Mon Mar 30 2020 01:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38397 * 120.82372 * 2 1 4 4 C 1.39329 * 119.20649 * 180.02562 * 3 2 1 5 5 C 1.48218 * 119.56049 * 179.97438 * 4 3 2 6 6 O 1.21501 * 120.00209 * 6.27581 * 5 4 3 7 7 N 1.34781 * 119.99696 * 186.27828 * 5 4 3 8 8 C 1.46498 * 120.00092 * 5.81140 * 7 5 4 9 9 C 1.46501 * 119.99693 * 185.81219 * 7 5 4 10 10 H 1.09002 * 109.47229 * 359.97438 * 9 7 5 11 11 C 1.53007 * 109.46590 * 239.99741 * 9 7 5 12 12 C 1.50694 * 109.47083 * 120.00186 * 9 7 5 13 13 H 1.08001 * 120.00337 * 35.00166 * 12 9 7 14 14 C 1.37879 * 119.99936 * 215.00369 * 12 9 7 15 15 N 1.31510 * 119.99996 * 184.96428 * 14 12 9 16 16 Si 1.86797 * 119.99916 * 4.96065 * 14 12 9 17 17 H 1.48498 * 109.47457 * 84.92678 * 16 14 12 18 18 H 1.48506 * 109.47207 * 204.92823 * 16 14 12 19 19 H 1.48503 * 109.47112 * 324.92439 * 16 14 12 20 20 N 1.32782 * 120.87638 * 0.25568 * 4 3 2 21 21 C 1.31338 * 121.79709 * 359.47011 * 20 4 3 22 22 C 1.39903 * 120.70650 * 0.52897 * 21 20 4 23 23 C 1.43194 * 120.47009 * 179.76093 * 22 21 20 24 24 N 3.49240 * 81.49442 * 179.97438 * 2 1 3 25 25 H 1.09009 * 109.46542 * 90.00139 * 1 2 3 26 26 H 1.08990 * 109.47149 * 209.99988 * 1 2 3 27 27 H 1.09001 * 109.47080 * 330.00297 * 1 2 3 28 28 H 1.08008 * 120.39395 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47207 * 275.84211 * 8 7 5 30 30 H 1.09001 * 109.47076 * 35.83781 * 8 7 5 31 31 H 1.08996 * 109.47043 * 155.83926 * 8 7 5 32 32 H 1.09004 * 109.46818 * 174.94219 * 11 9 7 33 33 H 1.08999 * 109.46964 * 54.94908 * 11 9 7 34 34 H 1.08995 * 109.47108 * 294.94279 * 11 9 7 35 35 H 0.97003 * 120.00233 * 179.97438 * 15 14 12 36 36 H 1.08002 * 119.64504 * 180.27265 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1885 0.0000 4 6 3.6089 1.1492 -0.0005 5 6 4.3762 2.4173 -0.0011 6 8 3.7960 3.4785 0.1139 7 7 5.7177 2.3931 -0.1293 8 6 6.4054 1.1272 -0.3954 9 6 6.4881 3.6327 -0.0025 10 1 5.8100 4.4636 0.1927 11 6 7.2524 3.8933 -1.3022 12 6 7.4651 3.5026 1.1374 13 1 7.9320 2.5506 1.3424 14 6 7.7629 4.5990 1.9186 15 7 8.6869 4.5111 2.8502 16 14 6.8540 6.2093 1.6536 17 1 5.5793 6.1894 2.4151 18 1 7.6962 7.3369 2.1275 19 1 6.5641 6.3818 0.2074 20 7 4.2579 -0.0092 -0.0061 21 6 3.6223 -1.1586 -0.0010 22 6 2.2240 -1.2017 -0.0005 23 6 1.5362 -2.4576 -0.0001 24 7 0.9905 -3.4540 0.0015 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6961 2.1351 -0.0004 29 1 6.5773 0.6026 0.5445 30 1 5.7895 0.5095 -1.0489 31 1 7.3611 1.3278 -0.8796 32 1 7.7536 4.8594 -1.2414 33 1 6.5544 3.8981 -2.1394 34 1 7.9936 3.1082 -1.4514 35 1 8.8968 5.2825 3.3996 36 1 4.1852 -2.0803 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337671150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:10 Heat of formation + Delta-G solvation = 24.073054 kcal Electronic energy + Delta-G solvation = -20373.236140 eV Core-core repulsion = 17243.577392 eV Total energy + Delta-G solvation = -3129.658748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.97271 -40.26719 -37.78861 -37.27360 -35.35806 -34.53673 -33.00420 -31.81628 -29.18442 -27.66643 -27.23979 -26.40651 -24.00569 -22.77449 -20.51011 -19.99332 -19.17705 -18.40866 -17.72898 -17.08026 -16.63175 -16.21956 -15.73140 -15.54077 -15.28175 -14.70194 -14.43503 -14.30345 -14.26055 -14.16492 -14.00333 -13.91186 -13.76442 -13.62903 -13.16837 -13.02269 -12.95012 -12.70879 -12.48672 -12.28504 -11.81151 -11.33818 -11.17406 -10.77585 -10.65759 -10.35792 -10.30015 -9.34272 -8.34780 -6.39352 -0.89717 0.07007 1.30693 1.36311 1.39060 1.44733 1.47914 2.06621 2.16990 2.30156 2.59854 2.78079 3.00606 3.14741 3.46213 3.52543 3.84394 3.97723 4.33992 4.46063 4.60330 4.63251 4.66250 4.69339 4.74330 4.80432 4.94431 5.00810 5.07753 5.13759 5.22912 5.40188 5.41165 5.54366 5.80913 6.14840 6.27935 6.56436 6.66007 6.72021 7.16824 7.30304 8.80629 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029670 B = 0.004585 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.480703 B = 6105.933844 C = 6434.869176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.016 3.984 3 C -0.117 4.117 4 C 0.106 3.894 5 C 0.542 3.458 6 O -0.584 6.584 7 N -0.573 5.573 8 C 0.101 3.899 9 C 0.220 3.780 10 H 0.045 0.955 11 C -0.140 4.140 12 C -0.520 4.520 13 H 0.051 0.949 14 C 0.029 3.971 15 N -0.934 5.934 16 Si 0.926 3.074 17 H -0.281 1.281 18 H -0.278 1.278 19 H -0.247 1.247 20 N -0.465 5.465 21 C 0.160 3.840 22 C -0.068 4.068 23 C 0.286 3.714 24 N -0.437 5.437 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.160 0.840 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.268 0.732 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 -10.250 -9.004 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.006 3.994 3 C -0.138 4.138 4 C -0.030 4.030 5 C 0.329 3.671 6 O -0.466 6.466 7 N -0.301 5.301 8 C -0.041 4.041 9 C 0.118 3.882 10 H 0.063 0.937 11 C -0.198 4.198 12 C -0.559 4.559 13 H 0.070 0.930 14 C -0.171 4.171 15 N -0.573 5.573 16 Si 0.750 3.250 17 H -0.207 1.207 18 H -0.203 1.203 19 H -0.171 1.171 20 N -0.177 5.177 21 C -0.003 4.003 22 C -0.074 4.074 23 C -0.029 4.029 24 N -0.113 5.113 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.178 0.822 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -13.926 -11.075 -8.822 19.860 hybrid contribution -0.445 1.260 0.555 1.447 sum -14.370 -9.815 -8.267 19.266 Atomic orbital electron populations 1.21072 0.86969 1.04956 1.05079 1.20562 0.98409 0.89897 0.90505 1.21981 0.92628 1.00294 0.98849 1.21224 0.92284 0.91746 0.97791 1.18512 0.82726 0.88052 0.77850 1.90695 1.70023 1.32129 1.53725 1.48267 1.05405 1.11037 1.65404 1.22003 0.97187 0.83517 1.01358 1.19245 0.90268 0.83952 0.94729 0.93720 1.22086 0.99936 1.01681 0.96137 1.21324 1.23822 0.97221 1.13490 0.93050 1.25648 0.95255 1.01878 0.94313 1.69992 1.32498 1.32220 1.22595 0.86071 0.78584 0.80086 0.80216 1.20694 1.20310 1.17073 1.68243 1.39269 0.97791 1.12349 1.23581 0.89538 0.97051 0.90081 1.17074 0.94131 0.86946 1.09211 1.25105 0.92757 0.92064 0.93014 1.81326 1.09007 1.11547 1.09385 0.87754 0.90609 0.88358 0.82241 0.93350 0.87861 0.92038 0.92850 0.93189 0.91884 0.92229 0.77934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.67 71.24 0.69 -0.61 16 2 C 0.02 0.27 5.95 -19.42 -0.12 0.15 16 3 C -0.12 -2.60 9.32 22.57 0.21 -2.39 16 4 C 0.11 3.07 6.57 41.92 0.28 3.34 16 5 C 0.54 21.33 7.65 86.90 0.66 22.00 16 6 O -0.58 -26.47 15.67 -3.72 -0.06 -26.53 16 7 N -0.57 -23.49 2.75 -829.79 -2.28 -25.78 16 8 C 0.10 3.36 8.16 127.77 1.04 4.41 16 9 C 0.22 10.36 2.28 44.25 0.10 10.46 16 10 H 0.04 2.29 4.06 -2.39 -0.01 2.28 16 11 C -0.14 -5.58 9.07 71.98 0.65 -4.93 16 12 C -0.52 -28.69 8.82 25.60 0.23 -28.46 16 13 H 0.05 3.06 7.67 -2.91 -0.02 3.04 16 14 C 0.03 1.64 5.47 84.66 0.46 2.11 16 15 N -0.93 -56.75 13.96 21.45 0.30 -56.45 16 16 Si 0.93 45.14 26.99 68.60 1.85 46.99 16 17 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.25 -11.31 6.81 99.48 0.68 -10.64 16 20 N -0.46 -11.44 6.13 -183.86 -1.13 -12.57 16 21 C 0.16 2.71 10.92 85.17 0.93 3.64 16 22 C -0.07 -1.08 5.75 -21.22 -0.12 -1.20 16 23 C 0.29 4.84 13.95 88.33 1.23 6.07 16 24 N -0.44 -9.21 18.54 19.00 0.35 -8.86 16 25 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.08 0.80 7.18 -2.39 -0.02 0.78 16 27 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 28 H 0.16 3.49 7.64 -2.91 -0.02 3.47 16 29 H 0.05 1.68 7.97 -2.39 -0.02 1.66 16 30 H 0.10 2.80 5.82 -2.39 -0.01 2.79 16 31 H 0.06 2.00 6.54 -2.39 -0.02 1.99 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 2.35 6.87 -2.39 -0.02 2.33 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -70.82 311.29 6.37 -64.46 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.08 Total: 4.16 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.25 Total: 14.57 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -2.76 Total: -103.66 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.06 Total: -26.53 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.85 Total: 46.99 kcal Total: -70.82 6.37 -64.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337671150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.530 kcal (2) G-P(sol) polarization free energy of solvation -70.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds