Wall clock time and date at job start Mon Mar 30 2020 01:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39341 * 120.62857 * 2 1 4 4 C 1.41348 * 134.59243 * 0.02562 * 3 2 1 5 5 C 1.35966 * 106.32234 * 179.97438 * 4 3 2 6 6 N 1.33359 * 109.85523 * 359.97438 * 5 4 3 7 7 C 1.32384 * 110.65430 * 359.97438 * 6 5 4 8 8 N 1.37090 * 133.39616 * 180.02562 * 7 6 5 9 9 H 0.97001 * 119.60544 * 359.97438 * 8 7 6 10 10 C 1.34345 * 120.79426 * 179.69458 * 8 7 6 11 11 C 1.37754 * 121.50461 * 0.55281 * 10 8 7 12 12 N 1.40390 * 119.94550 * 179.74196 * 11 10 8 13 13 C 1.34777 * 120.00132 * 335.06667 * 12 11 10 14 14 O 1.21301 * 119.99680 * 354.48431 * 13 12 11 15 15 C 1.50700 * 120.00083 * 174.20452 * 13 12 11 16 16 C 1.52997 * 109.47117 * 180.27925 * 15 13 12 17 17 C 1.50694 * 109.47441 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99751 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00638 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99516 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00489 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46884 * 89.99537 * 21 19 17 23 23 H 1.48499 * 109.47200 * 209.99637 * 21 19 17 24 24 H 1.48501 * 109.47279 * 330.00164 * 21 19 17 25 25 H 1.09001 * 109.46838 * 270.02111 * 1 2 3 26 26 H 1.09001 * 109.47558 * 30.01966 * 1 2 3 27 27 H 1.09003 * 109.47577 * 150.02170 * 1 2 3 28 28 H 1.08001 * 126.83507 * 359.97438 * 4 3 2 29 29 H 1.08005 * 125.07000 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.25026 * 180.27541 * 10 8 7 31 31 H 0.96998 * 120.00131 * 155.07460 * 12 11 10 32 32 H 1.08993 * 109.47036 * 300.28041 * 15 13 12 33 33 H 1.08996 * 109.46858 * 60.27996 * 15 13 12 34 34 H 1.09007 * 109.47354 * 300.00075 * 16 15 13 35 35 H 1.09002 * 109.47448 * 59.99909 * 16 15 13 36 36 H 0.96995 * 119.99659 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1990 0.0000 4 6 1.8563 2.5657 0.0005 5 6 3.0205 3.2681 0.0007 6 7 4.0562 2.4280 0.0011 7 6 3.6386 1.1718 0.0016 8 7 4.2868 -0.0362 0.0025 9 1 5.2565 -0.0598 0.0025 10 6 3.5950 -1.1879 0.0089 11 6 2.2175 -1.2003 0.0035 12 7 1.5277 -2.4230 0.0051 13 6 2.1203 -3.5317 -0.4807 14 8 3.2091 -3.4551 -1.0101 15 6 1.4332 -4.8676 -0.3606 16 6 2.3159 -5.9527 -0.9805 17 6 1.6286 -7.2884 -0.8610 18 1 0.6593 -7.3567 -0.3897 19 6 2.2376 -8.4236 -1.3525 20 7 3.4183 -8.3405 -1.9261 21 14 1.3859 -10.0794 -1.2037 22 1 0.5433 -10.3123 -2.4042 23 1 2.4063 -11.1533 -1.0993 24 1 0.5310 -10.0891 0.0104 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 0.8553 2.9713 0.0005 29 1 3.0952 4.3455 0.0015 30 1 4.1311 -2.1254 0.0140 31 1 0.6245 -2.4699 0.3557 32 1 1.2627 -5.0951 0.6916 33 1 0.4780 -4.8331 -0.8844 34 1 2.4865 -5.7251 -2.0328 35 1 3.2713 -5.9871 -0.4568 36 1 3.8465 -9.1390 -2.2721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558499680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:25 Heat of formation + Delta-G solvation = 20.243111 kcal Electronic energy + Delta-G solvation = -19878.466291 eV Core-core repulsion = 16748.641464 eV Total energy + Delta-G solvation = -3129.824826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.81583 -41.14867 -38.95258 -37.02981 -35.55765 -34.41063 -33.00518 -30.32787 -29.66382 -28.88704 -27.57734 -24.70939 -23.82819 -22.69593 -21.70395 -21.19925 -19.26690 -18.77566 -18.30877 -17.63971 -17.17627 -16.67458 -16.48459 -16.29281 -16.13203 -15.23186 -15.03019 -14.50788 -14.35562 -14.20411 -14.09095 -13.57100 -13.42052 -13.21512 -12.89748 -12.81488 -12.69618 -12.46583 -12.05761 -11.87448 -11.61569 -11.26802 -10.83990 -10.54468 -10.48331 -10.41936 -8.93298 -8.51105 -8.16032 -6.28318 -0.84076 0.35891 1.35145 1.45525 1.46315 1.57044 1.62023 2.05063 2.41326 2.45531 2.53928 3.18468 3.30363 3.49746 3.63004 3.96320 4.01244 4.20678 4.30929 4.53991 4.59869 4.61534 4.72893 4.88125 4.93484 5.05630 5.12127 5.19938 5.30862 5.39216 5.55215 5.68781 5.72691 5.89436 5.95044 6.20719 6.23949 6.39975 6.90537 7.11923 7.16116 7.42027 8.96102 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.047202 B = 0.003279 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.052942 B = 8536.300875 C = 9040.599065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.061 3.939 3 C -0.179 4.179 4 C -0.246 4.246 5 C 0.029 3.971 6 N -0.583 5.583 7 C 0.209 3.791 8 N -0.474 5.474 9 H 0.436 0.564 10 C 0.148 3.852 11 C 0.036 3.964 12 N -0.642 5.642 13 C 0.518 3.482 14 O -0.564 6.564 15 C -0.117 4.117 16 C 0.039 3.961 17 C -0.540 4.540 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.290 1.290 24 H -0.255 1.255 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.200 0.800 31 H 0.433 0.567 32 H 0.115 0.885 33 H 0.112 0.888 34 H -0.015 1.015 35 H -0.011 1.011 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 16.141 7.175 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 C -0.188 4.188 4 C -0.269 4.269 5 C -0.116 4.116 6 N -0.306 5.306 7 C -0.035 4.035 8 N -0.068 5.068 9 H 0.276 0.724 10 C 0.002 3.998 11 C -0.063 4.063 12 N -0.291 5.291 13 C 0.308 3.692 14 O -0.443 6.443 15 C -0.156 4.156 16 C 0.002 3.998 17 C -0.578 4.578 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.179 1.179 25 H 0.130 0.870 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.172 0.828 29 H 0.192 0.808 30 H 0.216 0.784 31 H 0.274 0.726 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.004 0.996 35 H 0.008 0.992 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.444 16.464 6.740 18.921 hybrid contribution -0.366 -1.109 -0.203 1.186 sum -6.810 15.354 6.536 18.024 Atomic orbital electron populations 1.21087 0.86881 1.05245 1.05209 1.20349 0.98553 0.88946 0.86976 1.19116 0.92163 0.95032 1.12444 1.21531 1.00039 0.90231 1.15104 1.22688 0.88484 0.99186 1.01242 1.69612 1.34876 0.97685 1.28380 1.19619 0.90598 0.87306 1.05937 1.40424 1.12115 1.02272 1.51977 0.72443 1.22786 0.94009 0.89422 0.93578 1.16889 0.89988 0.86710 1.12713 1.43315 1.19481 1.04388 1.61961 1.21595 0.85693 0.86673 0.75214 1.90592 1.23335 1.86433 1.43892 1.21662 1.00591 0.88625 1.04739 1.18725 0.94177 0.92496 0.94449 1.21733 1.05002 0.92972 1.38065 0.90485 1.26045 0.95521 1.03782 0.94924 1.70154 1.16852 1.30255 1.40417 0.85424 0.78056 0.78239 0.79163 1.20015 1.21600 1.17864 0.86996 0.89253 0.89063 0.82827 0.80835 0.78386 0.72573 0.86738 0.87022 0.99619 0.99226 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.43 71.23 0.67 -0.86 16 2 C 0.06 1.26 5.96 -19.30 -0.12 1.15 16 3 C -0.18 -4.68 6.03 -21.26 -0.13 -4.81 16 4 C -0.25 -6.10 10.73 22.51 0.24 -5.86 16 5 C 0.03 0.81 11.77 83.93 0.99 1.80 16 6 N -0.58 -18.63 11.20 -192.86 -2.16 -20.79 16 7 C 0.21 6.08 8.45 134.48 1.14 7.21 16 8 N -0.47 -11.13 5.28 -190.88 -1.01 -12.14 16 9 H 0.44 8.03 8.91 -92.71 -0.83 7.20 16 10 C 0.15 3.52 9.88 84.19 0.83 4.35 16 11 C 0.04 0.81 6.41 37.96 0.24 1.05 16 12 N -0.64 -12.97 5.02 -303.49 -1.52 -14.49 16 13 C 0.52 15.46 7.63 87.66 0.67 16.12 16 14 O -0.56 -21.63 13.14 -3.10 -0.04 -21.68 16 15 C -0.12 -3.75 5.64 29.85 0.17 -3.58 16 16 C 0.04 1.93 4.26 29.85 0.13 2.06 16 17 C -0.54 -28.18 9.11 25.60 0.23 -27.95 16 18 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 19 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 20 N -0.94 -56.41 13.29 21.45 0.28 -56.13 16 21 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 25 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.03 7.94 -2.39 -0.02 1.01 16 27 H 0.09 0.85 7.05 -2.39 -0.02 0.83 16 28 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.20 4.99 5.70 -2.91 -0.02 4.97 16 31 H 0.43 5.30 7.47 -92.71 -0.69 4.61 16 32 H 0.11 3.09 8.14 -2.39 -0.02 3.08 16 33 H 0.11 3.04 8.14 -2.39 -0.02 3.03 16 34 H -0.01 -0.83 8.10 -2.38 -0.02 -0.85 16 35 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 36 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -77.04 309.42 2.72 -74.31 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.39 Total: 16.01 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.53 Total: -9.14 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -4.41 Total: -103.54 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.04 Total: -21.68 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -77.04 2.72 -74.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558499680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.557 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds