Wall clock time and date at job start Mon Mar 30 2020 01:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99980 * 2 1 4 4 C 1.50696 * 109.46971 * 66.04881 * 3 2 1 5 5 H 1.07996 * 120.00456 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99895 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00389 * 179.97438 * 6 4 3 8 8 Si 1.86806 * 120.00138 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.47196 * 89.99861 * 8 6 4 10 10 H 1.48498 * 109.47242 * 210.00435 * 8 6 4 11 11 H 1.48506 * 109.46897 * 330.00131 * 8 6 4 12 12 C 1.46904 * 110.99909 * 236.04731 * 2 1 3 13 13 C 1.50706 * 109.46891 * 293.95201 * 12 2 1 14 14 N 1.29830 * 118.31791 * 0.02562 * 13 12 2 15 15 C 1.35655 * 121.62165 * 180.02562 * 14 13 12 16 16 C 1.39636 * 121.65575 * 179.97438 * 15 14 13 17 17 C 1.37668 * 119.68891 * 180.02562 * 16 15 14 18 18 C 1.38881 * 120.81853 * 0.02562 * 17 16 15 19 19 C 1.37767 * 120.56958 * 359.92573 * 18 17 16 20 20 C 1.39336 * 119.51575 * 0.09772 * 19 18 17 21 21 C 1.47048 * 121.93216 * 179.64853 * 20 19 18 22 22 O 1.21721 * 121.30024 * 0.27263 * 21 20 19 23 23 N 1.35350 * 117.40183 * 179.72717 * 21 20 19 24 24 H 0.97001 * 119.69487 * 180.25380 * 23 21 20 25 25 H 1.08999 * 109.47260 * 183.95486 * 1 2 3 26 26 H 1.08993 * 109.46886 * 303.95376 * 1 2 3 27 27 H 1.09003 * 109.47022 * 63.95454 * 1 2 3 28 28 H 1.09005 * 109.46795 * 186.04798 * 3 2 1 29 29 H 1.08999 * 109.46972 * 306.04437 * 3 2 1 30 30 H 0.96997 * 120.00328 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46841 * 173.95741 * 12 2 1 32 32 H 1.08991 * 109.47519 * 53.95328 * 12 2 1 33 33 H 1.08004 * 120.15679 * 359.97438 * 16 15 14 34 34 H 1.07995 * 119.58900 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.71622 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.24166 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3494 1.5285 7 7 1.7136 3.9393 2.6614 8 14 3.0000 4.2762 0.2309 9 1 2.0633 4.9798 -0.6817 10 1 3.8863 5.2678 0.8913 11 1 3.8239 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2205 -0.9728 14 7 0.9594 -2.5726 0.0772 15 6 0.6013 -3.8632 0.2928 16 6 -0.1268 -4.2428 1.4221 17 6 -0.4683 -5.5645 1.6007 18 6 -0.0970 -6.5272 0.6712 19 6 0.6208 -6.1771 -0.4515 20 6 0.9768 -4.8449 -0.6508 21 6 1.7487 -4.4136 -1.8257 22 8 2.1035 -5.2090 -2.6761 23 7 2.0396 -3.0958 -1.9306 24 1 2.5440 -2.7743 -2.6942 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.5739 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3443 -0.1083 29 1 1.5611 1.9273 -0.8309 30 1 1.9881 4.8554 2.8234 31 1 3.0797 -0.6611 -1.1756 32 1 1.5611 -0.3873 -2.0628 33 1 -0.4201 -3.5032 2.1525 34 1 -1.0311 -5.8564 2.4750 35 1 -0.3747 -7.5589 0.8289 36 1 0.9064 -6.9301 -1.1711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016555831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:50 Heat of formation + Delta-G solvation = 10.504422 kcal Electronic energy + Delta-G solvation = -20299.412018 eV Core-core repulsion = 17169.164890 eV Total energy + Delta-G solvation = -3130.247128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.60491 -39.43741 -39.28739 -37.59317 -34.69302 -34.56850 -32.29752 -31.65261 -29.73756 -28.73970 -26.14010 -25.59687 -23.74351 -22.95097 -21.84248 -20.30300 -19.75906 -19.02396 -18.36937 -17.16462 -16.85274 -16.45925 -16.16454 -16.00177 -15.74938 -15.65739 -15.03804 -14.87740 -14.69740 -14.35146 -13.87741 -13.60990 -13.26820 -12.92531 -12.85443 -12.65965 -12.52140 -12.46542 -12.15138 -11.73296 -11.50804 -11.38130 -11.32177 -10.72703 -10.66683 -10.16343 -9.06735 -8.96148 -8.20967 -6.24326 -0.49165 -0.21146 1.11678 1.41039 1.43092 1.51830 1.53801 1.77238 2.40852 2.84461 2.95699 3.06229 3.13528 3.39461 3.68016 3.86866 4.06295 4.27663 4.30530 4.36450 4.41654 4.59989 4.69136 4.72840 4.92311 5.02760 5.06684 5.11424 5.17917 5.34610 5.42189 5.44777 5.49613 5.60203 5.83716 6.01988 6.37323 6.58995 6.67535 6.83595 6.97873 7.38761 8.95964 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.004318 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.620874 B = 6483.024814 C = 7285.604396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.527 5.527 3 C 0.170 3.830 4 C -0.513 4.513 5 H 0.035 0.965 6 C 0.004 3.996 7 N -0.953 5.953 8 Si 0.949 3.051 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.238 1.238 12 C 0.093 3.907 13 C 0.400 3.600 14 N -0.509 5.509 15 C 0.135 3.865 16 C -0.125 4.125 17 C -0.062 4.062 18 C -0.132 4.132 19 C -0.053 4.053 20 C -0.227 4.227 21 C 0.550 3.450 22 O -0.548 6.548 23 N -0.637 5.637 24 H 0.431 0.569 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.016 0.984 28 H 0.041 0.959 29 H -0.004 1.004 30 H 0.265 0.735 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -18.287 -9.039 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.250 5.250 3 C 0.043 3.957 4 C -0.552 4.552 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.594 5.594 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.161 1.161 12 C -0.037 4.037 13 C 0.131 3.869 14 N -0.230 5.230 15 C 0.026 3.974 16 C -0.144 4.144 17 C -0.081 4.081 18 C -0.150 4.150 19 C -0.073 4.073 20 C -0.233 4.233 21 C 0.344 3.656 22 O -0.426 6.426 23 N -0.282 5.282 24 H 0.272 0.728 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.014 0.986 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.077 -18.518 -8.213 20.363 hybrid contribution 0.501 0.927 -1.543 1.868 sum -1.576 -17.591 -9.756 20.176 Atomic orbital electron populations 1.22302 0.87112 1.02021 0.99083 1.61515 1.08749 1.14431 1.40347 1.20032 0.95818 0.85024 0.94808 1.21271 1.34532 0.97352 1.01997 0.94691 1.25884 0.97130 0.98473 0.97755 1.70068 1.48868 1.13798 1.26668 0.85697 0.79158 0.78795 0.79134 1.19452 1.21420 1.16146 1.21274 1.03031 0.84653 0.94774 1.23040 0.87568 0.93158 0.83112 1.68785 1.18153 1.17017 1.19086 1.19277 0.95593 0.87762 0.94799 1.21150 0.99031 0.97928 0.96302 1.21713 0.95792 0.91197 0.99369 1.21577 0.98513 1.01676 0.93261 1.21215 0.94803 0.93338 0.97920 1.20736 1.07749 0.97426 0.97367 1.18531 0.79322 0.81430 0.86334 1.90855 1.55436 1.52897 1.43460 1.44244 1.51100 1.07942 1.24939 0.72793 0.89709 0.93841 0.96566 0.94136 0.98613 0.92627 0.85708 0.89274 0.84358 0.81500 0.81546 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 8.98 127.69 1.15 2.76 16 2 N -0.53 -20.03 4.41 -931.65 -4.11 -24.14 16 3 C 0.17 7.44 3.79 85.56 0.32 7.76 16 4 C -0.51 -28.76 9.01 25.60 0.23 -28.52 16 5 H 0.03 2.24 7.37 -2.91 -0.02 2.21 16 6 C 0.00 0.24 5.47 84.65 0.46 0.70 16 7 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 8 Si 0.95 41.98 27.47 68.60 1.88 43.87 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 12 C 0.09 2.46 5.37 85.56 0.46 2.92 16 13 C 0.40 10.77 7.37 138.06 1.02 11.78 16 14 N -0.51 -16.05 7.06 -179.84 -1.27 -17.32 16 15 C 0.13 3.88 6.63 39.63 0.26 4.15 16 16 C -0.12 -3.01 10.03 22.47 0.23 -2.79 16 17 C -0.06 -1.04 10.00 22.29 0.22 -0.82 16 18 C -0.13 -2.12 10.02 22.31 0.22 -1.89 16 19 C -0.05 -1.16 9.68 22.42 0.22 -0.94 16 20 C -0.23 -6.18 5.89 -19.96 -0.12 -6.30 16 21 C 0.55 15.37 7.99 86.46 0.69 16.06 16 22 O -0.55 -17.41 17.48 -4.42 -0.08 -17.48 16 23 N -0.64 -14.68 5.27 -304.90 -1.61 -16.28 16 24 H 0.43 7.07 8.75 -92.71 -0.81 6.26 16 25 H 0.08 2.96 5.64 -2.39 -0.01 2.94 16 26 H 0.04 1.91 6.76 -2.39 -0.02 1.90 16 27 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 1.70 6.99 -2.38 -0.02 1.68 16 29 H 0.00 -0.16 7.55 -2.39 -0.02 -0.18 16 30 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.13 2.79 7.93 -2.39 -0.02 2.77 16 32 H 0.09 1.89 8.12 -2.39 -0.02 1.88 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.14 2.80 7.83 -2.91 -0.02 2.78 16 Total: -1.00 -73.86 304.20 0.73 -73.13 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.25 Total: 12.12 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.37 Total: 4.86 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.69 Total: -116.49 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.08 Total: -17.48 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.87 kcal Total: -73.86 0.73 -73.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016555831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.637 kcal (2) G-P(sol) polarization free energy of solvation -73.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds