Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 111.00310 * 2 1 4 4 C 1.50699 * 109.47055 * 66.04321 * 3 2 1 5 5 H 1.08000 * 119.99528 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00042 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00217 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46893 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47482 * 119.99882 * 8 6 4 11 11 H 1.48496 * 109.46972 * 240.00304 * 8 6 4 12 12 C 1.46899 * 111.00038 * 236.04443 * 2 1 3 13 13 C 1.50699 * 109.47358 * 293.95512 * 12 2 1 14 14 O 1.21286 * 119.99734 * 359.97438 * 13 12 2 15 15 N 1.34773 * 120.00204 * 180.02562 * 13 12 2 16 16 C 1.39958 * 120.00169 * 184.61535 * 15 13 12 17 17 C 1.38991 * 119.99496 * 144.87008 * 16 15 13 18 18 C 1.38219 * 120.23456 * 180.02562 * 17 16 15 19 19 C 1.38022 * 120.22600 * 359.67849 * 18 17 16 20 20 C 1.39639 * 119.98482 * 0.60423 * 19 18 17 21 21 C 1.43196 * 120.11634 * 179.69593 * 20 19 18 22 22 N 7.73159 * 85.11467 * 166.13558 * 2 1 3 23 23 C 1.38577 * 119.99249 * 324.89482 * 16 15 13 24 24 H 1.08998 * 109.46701 * 183.95198 * 1 2 3 25 25 H 1.08997 * 109.46786 * 303.95800 * 1 2 3 26 26 H 1.09004 * 109.46748 * 63.95660 * 1 2 3 27 27 H 1.08991 * 109.47011 * 186.04851 * 3 2 1 28 28 H 1.08997 * 109.46652 * 306.04699 * 3 2 1 29 29 H 0.96997 * 120.00506 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47269 * 173.95400 * 12 2 1 31 31 H 1.08995 * 109.47370 * 53.95595 * 12 2 1 32 32 H 0.97002 * 120.00307 * 4.60568 * 15 13 12 33 33 H 1.08000 * 119.88486 * 0.02662 * 17 16 15 34 34 H 1.07999 * 119.88977 * 180.02562 * 18 17 16 35 35 H 1.07991 * 120.00750 * 180.30064 * 19 18 17 36 36 H 1.08006 * 120.11450 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3715 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0747 1.5113 2.0487 6 6 2.0269 3.3495 1.5284 7 7 2.7112 4.0022 0.6146 8 14 1.5831 4.1869 3.1382 9 1 0.8157 3.2443 3.9914 10 1 2.8249 4.5944 3.8430 11 1 0.7551 5.3877 2.8596 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 8 1.0055 -2.5832 -0.0030 15 7 2.0189 -3.1181 -1.9027 16 6 1.6045 -4.4510 -1.8004 17 6 1.3248 -5.1818 -2.9492 18 6 0.9146 -6.4983 -2.8539 19 6 0.7864 -7.0984 -1.6176 20 6 1.0593 -6.3712 -0.4572 21 6 0.9209 -6.9890 0.8272 22 7 0.8106 -7.4791 1.8460 23 6 1.4726 -5.0418 -0.5538 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9234 27 1 3.0797 1.3444 -0.1083 28 1 1.5612 1.9273 -0.8309 29 1 2.9859 4.9183 0.7765 30 1 3.0798 -0.6611 -1.1756 31 1 1.5612 -0.3873 -2.0628 32 1 2.5810 -2.8405 -2.6429 33 1 1.4282 -4.7194 -3.9196 34 1 0.6991 -7.0611 -3.7501 35 1 0.4704 -8.1287 -1.5475 36 1 1.6888 -4.4752 0.3399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019846970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = 12.048837 kcal Electronic energy + Delta-G solvation = -19597.641889 eV Core-core repulsion = 16467.461733 eV Total energy + Delta-G solvation = -3130.180157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63258 -39.87042 -37.91964 -37.44091 -35.71589 -34.63531 -32.25673 -31.37418 -29.61835 -28.55697 -26.13237 -25.01828 -23.92920 -22.44771 -21.27798 -20.20459 -18.66123 -18.00794 -17.23282 -17.19387 -16.81499 -16.63844 -16.02807 -15.71547 -15.55017 -15.10880 -15.05893 -14.66123 -14.24929 -14.18318 -13.93941 -13.66166 -13.52877 -13.25747 -12.81209 -12.71321 -12.65037 -12.60025 -12.54003 -12.29870 -11.97120 -11.43536 -11.35863 -10.67045 -10.60370 -9.91338 -9.19476 -9.00643 -8.21582 -6.29760 -0.21080 0.32110 1.39758 1.41260 1.52355 1.54373 1.55796 1.90876 2.02653 2.41111 2.84563 2.92015 3.11419 3.38229 3.79394 4.00587 4.16827 4.21992 4.32805 4.43575 4.47648 4.55126 4.59640 4.69954 4.88980 5.12989 5.17096 5.24780 5.29369 5.32432 5.41614 5.49462 5.64526 5.95259 6.02502 6.27344 6.36229 6.40049 6.64172 6.85172 7.19965 7.39485 8.89251 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028947 B = 0.003419 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.061400 B = 8187.957465 C = 8913.490098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.526 4.526 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.036 3.964 13 C 0.519 3.481 14 O -0.540 6.540 15 N -0.660 5.660 16 C 0.134 3.866 17 C -0.098 4.098 18 C -0.090 4.090 19 C -0.077 4.077 20 C -0.032 4.032 21 C 0.276 3.724 22 N -0.469 5.469 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.017 0.983 27 H 0.016 0.984 28 H -0.025 1.025 29 H 0.265 0.735 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.432 0.568 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -19.679 -15.552 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.269 5.269 3 C 0.083 3.917 4 C -0.565 4.565 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.570 5.570 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.201 1.201 12 C -0.095 4.095 13 C 0.308 3.692 14 O -0.415 6.415 15 N -0.309 5.309 16 C 0.039 3.961 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.036 4.036 21 C -0.038 4.038 22 N -0.145 5.145 23 C -0.121 4.121 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.034 0.966 28 H -0.007 1.007 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.100 0.900 32 H 0.272 0.728 33 H 0.187 0.813 34 H 0.196 0.804 35 H 0.174 0.826 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.682 -20.665 -12.872 24.404 hybrid contribution 0.017 1.685 -0.101 1.688 sum -1.666 -18.980 -12.973 23.050 Atomic orbital electron populations 1.22240 0.87528 1.01264 0.99571 1.61678 1.08469 1.15650 1.41062 1.19437 0.94259 0.82768 0.95196 1.21475 1.34876 0.97523 1.02585 0.92786 1.25776 0.95046 0.97887 1.00404 1.70042 1.39232 1.11918 1.35768 0.85421 0.78132 0.78212 0.79385 1.19566 1.20224 1.20123 1.22032 1.03172 0.89660 0.94647 1.20999 0.77978 0.88454 0.81812 1.90670 1.39738 1.80593 1.30528 1.43358 1.52237 1.06101 1.29180 1.17732 1.00245 0.84330 0.93755 1.21588 0.97422 0.95153 0.97711 1.21358 0.97287 0.94029 0.98092 1.21486 0.97270 1.00766 0.90309 1.15933 1.07803 0.93266 0.86560 1.26106 0.92327 0.92352 0.93007 1.81234 1.10674 1.10638 1.11960 1.21198 0.99394 0.92976 0.98499 0.90939 0.93097 0.96449 0.96556 1.00718 0.92564 0.86613 0.90034 0.72775 0.81342 0.80379 0.82645 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.75 9.03 127.69 1.15 2.90 16 2 N -0.54 -23.60 4.49 -931.65 -4.18 -27.78 16 3 C 0.21 10.79 4.72 85.55 0.40 11.20 16 4 C -0.53 -30.14 8.46 25.60 0.22 -29.93 16 5 H 0.05 3.16 7.12 -2.91 -0.02 3.14 16 6 C 0.01 0.41 5.46 84.65 0.46 0.88 16 7 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 8 Si 0.96 44.84 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.04 1.11 5.45 85.56 0.47 1.57 16 13 C 0.52 14.77 7.40 87.66 0.65 15.42 16 14 O -0.54 -20.13 11.74 -3.05 -0.04 -20.16 16 15 N -0.66 -11.85 5.34 -303.62 -1.62 -13.47 16 16 C 0.13 2.37 6.29 38.10 0.24 2.61 16 17 C -0.10 -0.89 9.96 22.45 0.22 -0.67 16 18 C -0.09 -0.60 10.02 22.21 0.22 -0.37 16 19 C -0.08 -0.88 9.75 22.56 0.22 -0.66 16 20 C -0.03 -0.63 5.73 -21.38 -0.12 -0.75 16 21 C 0.28 7.10 15.33 88.33 1.35 8.45 16 22 N -0.47 -14.44 18.54 19.00 0.35 -14.09 16 23 C -0.10 -2.30 8.40 22.67 0.19 -2.11 16 24 H 0.07 2.88 5.88 -2.39 -0.01 2.86 16 25 H 0.05 2.31 6.76 -2.39 -0.02 2.30 16 26 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.02 0.88 7.93 -2.39 -0.02 0.86 16 28 H -0.02 -1.35 8.12 -2.39 -0.02 -1.37 16 29 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.12 3.20 7.93 -2.38 -0.02 3.18 16 31 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 32 H 0.43 4.14 8.82 -92.71 -0.82 3.32 16 33 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 35 H 0.16 1.03 8.06 -2.92 -0.02 1.01 16 36 H 0.11 3.56 6.22 -2.91 -0.02 3.54 16 Total: -1.00 -76.88 317.78 2.80 -74.08 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 0.30 Total: 0.39 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.68 Total: 8.54 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -5.17 Total: -109.71 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.04 Total: -20.16 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -76.88 2.80 -74.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019846970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.127 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds