Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47234 * 2 1 4 4 C 1.46501 * 119.99821 * 278.67445 * 3 2 1 5 5 C 1.50706 * 109.46678 * 269.99564 * 4 3 2 6 6 H 1.07996 * 119.99953 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99693 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00294 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99838 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47107 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47124 * 119.99995 * 9 7 5 12 12 H 1.48501 * 109.46952 * 240.00217 * 9 7 5 13 13 C 1.34775 * 120.00144 * 98.67083 * 3 2 1 14 14 O 1.21576 * 120.00257 * 187.00730 * 13 3 2 15 15 C 1.47683 * 120.00195 * 7.00111 * 13 3 2 16 16 C 1.40142 * 119.90170 * 329.68582 * 15 13 3 17 17 C 1.36427 * 120.45583 * 179.97438 * 16 15 13 18 18 C 1.39066 * 120.14651 * 359.97438 * 17 16 15 19 19 N 1.37800 * 133.86462 * 180.37668 * 18 17 16 20 20 H 0.96997 * 126.30980 * 359.92014 * 19 18 17 21 21 C 1.36090 * 107.39146 * 180.02562 * 19 18 17 22 22 N 1.30068 * 110.12343 * 359.56813 * 21 19 18 23 23 C 1.35864 * 109.56570 * 0.26653 * 22 21 19 24 24 C 1.39120 * 119.90436 * 149.65868 * 15 13 3 25 25 H 1.08994 * 109.47621 * 300.00315 * 1 2 3 26 26 H 1.09000 * 109.46976 * 60.00125 * 1 2 3 27 27 H 1.09005 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46969 * 239.99335 * 2 1 3 29 29 H 1.08997 * 109.46517 * 119.99673 * 2 1 3 30 30 H 1.08994 * 109.47477 * 29.99464 * 4 3 2 31 31 H 1.09002 * 109.47017 * 150.00065 * 4 3 2 32 32 H 0.97001 * 120.00110 * 180.02562 * 8 7 5 33 33 H 1.07997 * 119.76788 * 0.02562 * 16 15 13 34 34 H 1.08003 * 119.92338 * 179.97438 * 17 16 15 35 35 H 1.07995 * 124.93878 * 179.84080 * 21 19 18 36 36 H 1.07996 * 120.24286 * 0.02562 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0821 2.1355 -1.2542 5 6 3.4283 1.9260 -1.8985 6 1 4.1627 1.2938 -1.4216 7 6 3.7220 2.5405 -3.0973 8 7 2.8276 3.3099 -3.6783 9 14 5.3904 2.2803 -3.8962 10 1 6.2103 1.3786 -3.0477 11 1 5.2072 1.6682 -5.2367 12 1 6.0802 3.5876 -4.0389 13 6 2.4089 1.9579 1.1538 14 8 2.6928 3.1398 1.1771 15 6 2.4919 1.1541 2.3900 16 6 1.6308 0.0638 2.5736 17 6 1.6981 -0.6866 3.7109 18 6 2.6250 -0.3748 4.6996 19 7 2.9379 -0.9259 5.9232 20 1 2.5156 -1.6986 6.3300 21 6 3.9470 -0.1851 6.4570 22 7 4.2780 0.7731 5.6421 23 6 3.4982 0.7153 4.5311 24 6 3.4251 1.4812 3.3686 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.2990 1.7876 -1.9277 31 1 1.9392 3.1963 -1.0479 32 1 3.0341 3.7420 -4.5218 33 1 0.9096 -0.1844 1.8091 34 1 1.0300 -1.5248 3.8436 35 1 4.4090 -0.3689 7.4157 36 1 4.0891 2.3212 3.2279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037842310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = 67.103288 kcal Electronic energy + Delta-G solvation = -20530.861684 eV Core-core repulsion = 17403.068867 eV Total energy + Delta-G solvation = -3127.792817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.18874 -39.56939 -36.65651 -35.50721 -33.26417 -32.81089 -30.52101 -30.12740 -29.34662 -27.07292 -24.10975 -23.22101 -22.70774 -22.01409 -21.52658 -18.87222 -18.21779 -17.63637 -16.41127 -16.16135 -15.45206 -15.26125 -14.79336 -14.49640 -14.31004 -13.95424 -13.75344 -13.55408 -13.13147 -12.44939 -12.21880 -12.01848 -11.68609 -11.54332 -11.34689 -11.17729 -10.89477 -10.84070 -10.61284 -10.39563 -10.11724 -10.05023 -9.58961 -8.99271 -8.41504 -8.34673 -8.21569 -7.62010 -6.01608 -4.06232 0.93936 1.20966 2.68867 2.75666 3.32388 3.38845 3.41122 3.45863 3.80151 4.15081 4.25737 4.48365 4.52671 4.91814 4.99935 5.22162 5.27211 5.32827 5.33105 5.45555 5.56902 5.62457 5.75713 5.97851 6.03341 6.24921 6.25269 6.41858 6.48198 6.53535 6.73153 7.12686 7.15072 7.49164 7.57418 7.73294 7.95494 8.26421 8.43264 8.92485 9.10262 9.58984 11.06436 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.004723 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.485341 B = 5927.503877 C = 6497.838324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 N -0.588 5.588 4 C 0.245 3.755 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.551 3.449 14 O -0.537 6.537 15 C -0.128 4.128 16 C -0.099 4.099 17 C -0.126 4.126 18 C 0.059 3.941 19 N -0.604 5.604 20 H 0.422 0.578 21 C 0.252 3.748 22 N -0.487 5.487 23 C 0.034 3.966 24 C -0.004 4.004 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.262 0.738 33 H 0.168 0.832 34 H 0.126 0.874 35 H 0.216 0.784 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -13.486 17.570 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.049 4.049 3 N -0.319 5.319 4 C 0.126 3.874 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.338 3.662 14 O -0.415 6.415 15 C -0.134 4.134 16 C -0.118 4.118 17 C -0.147 4.147 18 C -0.051 4.051 19 N -0.216 5.216 20 H 0.261 0.739 21 C -0.036 4.036 22 N -0.207 5.207 23 C -0.083 4.083 24 C -0.024 4.024 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.185 0.815 34 H 0.143 0.857 35 H 0.232 0.768 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.621 -12.058 17.455 21.522 hybrid contribution 0.162 -1.218 -0.351 1.278 sum -3.459 -13.276 17.105 21.927 Atomic orbital electron populations 1.22299 0.96652 1.01751 1.02905 1.22248 0.93637 0.84996 1.04056 1.48088 1.61814 1.13196 1.08772 1.19318 0.97077 0.92763 0.78251 1.21497 0.99953 1.29528 1.05599 0.92331 1.24926 0.97226 0.94905 0.96994 1.69943 1.34267 1.31160 1.17969 0.86451 0.84001 0.78083 0.78963 1.19776 1.20989 1.20852 1.18000 0.78353 0.86931 0.82902 1.90756 1.49776 1.15471 1.85494 1.19958 0.99038 0.98026 0.96357 1.21954 0.99554 0.93369 0.96890 1.19608 0.99574 1.02760 0.92764 1.19073 1.00391 0.97290 0.88386 1.43124 1.33050 1.28929 1.16482 0.73929 1.25347 0.89270 0.89142 0.99808 1.70466 1.25937 1.21845 1.02411 1.18903 0.96695 0.97243 0.95476 1.20387 0.96287 0.97029 0.88690 0.92377 0.91244 0.91800 0.90213 0.88782 0.94807 0.93541 0.92786 0.81493 0.85653 0.76812 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 9.14 37.16 0.34 -1.99 16 2 C 0.07 1.20 5.58 -4.04 -0.02 1.17 16 3 N -0.59 -12.73 2.46 -176.24 -0.43 -13.16 16 4 C 0.24 6.46 5.22 -5.19 -0.03 6.43 16 5 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.55 12.24 7.44 -12.40 -0.09 12.15 16 14 O -0.54 -14.21 16.25 5.30 0.09 -14.12 16 15 C -0.13 -2.27 5.58 -105.00 -0.59 -2.86 16 16 C -0.10 -1.35 7.40 -39.52 -0.29 -1.64 16 17 C -0.13 -1.43 10.00 -39.93 -0.40 -1.83 16 18 C 0.06 0.73 7.30 -83.95 -0.61 0.12 16 19 N -0.60 -4.99 6.22 -11.72 -0.07 -5.07 16 20 H 0.42 1.72 8.96 -40.82 -0.37 1.36 16 21 C 0.25 2.29 12.97 -89.77 -1.16 1.12 16 22 N -0.49 -6.97 11.28 -12.07 -0.14 -7.10 16 23 C 0.03 0.53 7.22 -84.72 -0.61 -0.08 16 24 C 0.00 -0.06 9.64 -38.82 -0.37 -0.44 16 25 H 0.06 0.73 7.08 -51.93 -0.37 0.36 16 26 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 29 H 0.09 1.32 3.97 -52.37 -0.21 1.11 16 30 H 0.03 0.89 7.84 -51.93 -0.41 0.48 16 31 H 0.05 1.39 7.34 -51.93 -0.38 1.00 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.17 2.03 2.57 -52.49 -0.13 1.89 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.14 2.63 7.91 -52.49 -0.42 2.21 16 LS Contribution 304.78 15.07 4.59 4.59 Total: -1.00 -36.72 304.78 -8.44 -45.15 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.93 Total: 0.20 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -4.26 Total: -1.59 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.09 Total: -51.32 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.72 -8.44 -45.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037842310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.258 kcal (2) G-P(sol) polarization free energy of solvation -36.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds