Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47234 * 2 1 4 4 C 1.46501 * 119.99821 * 278.67445 * 3 2 1 5 5 C 1.50706 * 109.46678 * 269.99564 * 4 3 2 6 6 H 1.07996 * 119.99953 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99693 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00294 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99838 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47107 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47124 * 119.99995 * 9 7 5 12 12 H 1.48501 * 109.46952 * 240.00217 * 9 7 5 13 13 C 1.34775 * 120.00144 * 98.67083 * 3 2 1 14 14 O 1.21576 * 120.00257 * 187.00730 * 13 3 2 15 15 C 1.47683 * 120.00195 * 7.00111 * 13 3 2 16 16 C 1.40142 * 119.90170 * 329.68582 * 15 13 3 17 17 C 1.36427 * 120.45583 * 179.97438 * 16 15 13 18 18 C 1.39066 * 120.14651 * 359.97438 * 17 16 15 19 19 N 1.37800 * 133.86462 * 180.37668 * 18 17 16 20 20 H 0.96997 * 126.30980 * 359.92014 * 19 18 17 21 21 C 1.36090 * 107.39146 * 180.02562 * 19 18 17 22 22 N 1.30068 * 110.12343 * 359.56813 * 21 19 18 23 23 C 1.35864 * 109.56570 * 0.26653 * 22 21 19 24 24 C 1.39120 * 119.90436 * 149.65868 * 15 13 3 25 25 H 1.08994 * 109.47621 * 300.00315 * 1 2 3 26 26 H 1.09000 * 109.46976 * 60.00125 * 1 2 3 27 27 H 1.09005 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.46969 * 239.99335 * 2 1 3 29 29 H 1.08997 * 109.46517 * 119.99673 * 2 1 3 30 30 H 1.08994 * 109.47477 * 29.99464 * 4 3 2 31 31 H 1.09002 * 109.47017 * 150.00065 * 4 3 2 32 32 H 0.97001 * 120.00110 * 180.02562 * 8 7 5 33 33 H 1.07997 * 119.76788 * 0.02562 * 16 15 13 34 34 H 1.08003 * 119.92338 * 179.97438 * 17 16 15 35 35 H 1.07995 * 124.93878 * 179.84080 * 21 19 18 36 36 H 1.07996 * 120.24286 * 0.02562 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0821 2.1355 -1.2542 5 6 3.4283 1.9260 -1.8985 6 1 4.1627 1.2938 -1.4216 7 6 3.7220 2.5405 -3.0973 8 7 2.8276 3.3099 -3.6783 9 14 5.3904 2.2803 -3.8962 10 1 6.2103 1.3786 -3.0477 11 1 5.2072 1.6682 -5.2367 12 1 6.0802 3.5876 -4.0389 13 6 2.4089 1.9579 1.1538 14 8 2.6928 3.1398 1.1771 15 6 2.4919 1.1541 2.3900 16 6 1.6308 0.0638 2.5736 17 6 1.6981 -0.6866 3.7109 18 6 2.6250 -0.3748 4.6996 19 7 2.9379 -0.9259 5.9232 20 1 2.5156 -1.6986 6.3300 21 6 3.9470 -0.1851 6.4570 22 7 4.2780 0.7731 5.6421 23 6 3.4982 0.7153 4.5311 24 6 3.4251 1.4812 3.3686 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.2990 1.7876 -1.9277 31 1 1.9392 3.1963 -1.0479 32 1 3.0341 3.7420 -4.5218 33 1 0.9096 -0.1844 1.8091 34 1 1.0300 -1.5248 3.8436 35 1 4.4090 -0.3689 7.4157 36 1 4.0891 2.3212 3.2279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037842310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = 41.254959 kcal Electronic energy + Delta-G solvation = -20531.982551 eV Core-core repulsion = 17403.068867 eV Total energy + Delta-G solvation = -3128.913684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.12713 -41.11807 -37.96513 -37.16182 -34.93539 -34.19558 -32.06713 -31.32146 -30.45146 -28.98023 -25.73419 -24.55075 -23.96647 -23.35264 -22.50158 -20.37116 -19.14199 -18.85923 -18.59675 -17.60085 -16.98060 -16.49784 -16.26991 -15.96124 -15.65766 -15.22010 -14.96256 -14.74786 -14.54926 -14.32729 -13.57014 -13.40915 -13.27765 -13.05717 -12.87238 -12.68188 -12.56451 -12.35634 -12.17736 -11.87366 -11.70143 -11.61023 -11.03589 -10.72981 -10.65629 -9.58248 -9.38052 -9.20171 -8.23643 -6.38723 -0.13794 0.08552 1.34892 1.38008 1.49787 1.77876 1.94013 2.02696 2.27044 2.41088 2.83111 3.05613 3.32275 3.58759 3.70962 4.00056 4.20382 4.26022 4.34613 4.36858 4.46212 4.58665 4.63579 4.87203 4.95735 4.97610 5.05580 5.16064 5.25838 5.34489 5.37229 5.44876 5.56327 5.71328 5.84575 6.05097 6.52526 6.67604 6.73707 6.89064 7.24239 7.40396 8.83729 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024675 B = 0.004723 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.485341 B = 5927.503877 C = 6497.838324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.065 3.935 3 N -0.591 5.591 4 C 0.260 3.740 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.265 1.265 12 H -0.281 1.281 13 C 0.541 3.459 14 O -0.601 6.601 15 C -0.142 4.142 16 C -0.107 4.107 17 C -0.094 4.094 18 C 0.063 3.937 19 N -0.580 5.580 20 H 0.448 0.552 21 C 0.284 3.716 22 N -0.548 5.548 23 C 0.011 3.989 24 C -0.035 4.035 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.030 0.970 31 H -0.002 1.002 32 H 0.268 0.732 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.270 0.730 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 -17.802 19.973 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.056 4.056 3 N -0.321 5.321 4 C 0.139 3.861 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.190 1.190 12 H -0.207 1.207 13 C 0.331 3.669 14 O -0.484 6.484 15 C -0.148 4.148 16 C -0.126 4.126 17 C -0.114 4.114 18 C -0.049 4.049 19 N -0.193 5.193 20 H 0.292 0.708 21 C -0.003 4.003 22 N -0.268 5.268 23 C -0.106 4.106 24 C -0.056 4.056 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.048 0.952 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.202 0.798 34 H 0.197 0.803 35 H 0.286 0.714 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.186 -16.465 19.886 26.155 hybrid contribution 0.338 0.070 -0.890 0.954 sum -3.849 -16.395 18.996 25.386 Atomic orbital electron populations 1.22256 0.93827 1.04550 1.02185 1.22692 0.95929 0.81767 1.05240 1.48098 1.61769 1.15120 1.07066 1.18777 0.96252 0.90826 0.80218 1.21734 1.00694 1.29868 1.06191 0.93107 1.25845 1.01285 0.94323 0.97499 1.70055 1.36326 1.31731 1.18482 0.85362 0.78873 0.78032 0.78502 1.19382 1.18969 1.20716 1.18831 0.76943 0.86700 0.84443 1.90695 1.52532 1.18412 1.86718 1.19569 1.01351 0.99613 0.94235 1.22003 0.99246 0.92482 0.98841 1.20065 0.98458 1.02426 0.90493 1.19199 0.99540 0.96266 0.89921 1.43099 1.32360 1.29151 1.14729 0.70830 1.26431 0.87431 0.86434 1.00003 1.70444 1.27963 1.25123 1.03294 1.18932 0.98215 0.98195 0.95242 1.20179 0.97098 0.97513 0.90770 0.91583 0.93565 0.87081 0.90919 0.85771 0.95161 0.98418 0.92304 0.79795 0.80256 0.71411 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 9.14 71.98 0.66 -3.50 16 2 C 0.06 2.07 5.58 86.38 0.48 2.55 16 3 N -0.59 -27.09 2.46 -829.76 -2.04 -29.13 16 4 C 0.26 14.74 5.22 85.63 0.45 15.19 16 5 C -0.55 -32.90 9.39 25.60 0.24 -32.66 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 9 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C 0.54 25.96 7.44 86.74 0.65 26.61 16 14 O -0.60 -35.24 16.25 -3.96 -0.06 -35.31 16 15 C -0.14 -5.26 5.58 -20.11 -0.11 -5.37 16 16 C -0.11 -2.68 7.40 22.31 0.17 -2.52 16 17 C -0.09 -1.69 10.00 22.05 0.22 -1.47 16 18 C 0.06 1.33 7.30 39.00 0.28 1.62 16 19 N -0.58 -6.47 6.22 -190.99 -1.19 -7.65 16 20 H 0.45 0.62 8.96 -92.71 -0.83 -0.21 16 21 C 0.28 3.92 12.97 180.05 2.33 6.25 16 22 N -0.55 -14.95 11.28 -192.09 -2.17 -17.12 16 23 C 0.01 0.34 7.22 39.40 0.28 0.62 16 24 C -0.03 -1.32 9.64 22.76 0.22 -1.10 16 25 H 0.07 1.52 7.08 -2.39 -0.02 1.50 16 26 H 0.05 1.35 7.91 -2.39 -0.02 1.33 16 27 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 29 H 0.13 3.24 3.97 -2.80 -0.01 3.23 16 30 H 0.03 1.70 7.84 -2.39 -0.02 1.68 16 31 H 0.00 -0.15 7.34 -2.39 -0.02 -0.17 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 33 H 0.19 3.90 2.57 -2.91 -0.01 3.89 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.27 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.10 4.51 7.91 -2.91 -0.02 4.48 16 Total: -1.00 -90.60 304.78 3.48 -87.13 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 0.30 Total: 3.51 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.33 Total: 7.25 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -5.11 Total: -110.97 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.06 Total: -35.31 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -90.60 3.48 -87.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037842310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.381 kcal (2) G-P(sol) polarization free energy of solvation -90.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds