Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 111.00213 * 2 1 4 4 C 1.50699 * 109.46760 * 66.04801 * 3 2 1 5 5 O 1.21293 * 120.00231 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99814 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99666 * 180.02562 * 6 4 3 8 8 H 1.07995 * 120.00346 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99742 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99896 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00082 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47050 * 90.00541 * 11 9 7 13 13 H 1.48502 * 109.47399 * 210.00539 * 11 9 7 14 14 H 1.48507 * 109.47056 * 330.00575 * 11 9 7 15 15 C 1.46898 * 111.00029 * 236.05190 * 2 1 3 16 16 C 1.50705 * 109.46964 * 293.94855 * 15 2 1 17 17 C 1.38379 * 119.92632 * 269.97976 * 16 15 2 18 18 C 1.38342 * 120.30369 * 180.02562 * 17 16 15 19 19 C 1.37972 * 120.15304 * 359.67043 * 18 17 16 20 20 C 1.39616 * 119.84009 * 0.60500 * 19 18 17 21 21 C 1.43205 * 120.14614 * 179.69727 * 20 19 18 22 22 N 6.51485 * 57.01812 * 204.94758 * 2 1 3 23 23 C 1.37927 * 119.91836 * 89.99993 * 16 15 2 24 24 H 1.08996 * 109.47176 * 183.95051 * 1 2 3 25 25 H 1.09006 * 109.46851 * 303.95318 * 1 2 3 26 26 H 1.09000 * 109.47500 * 63.95302 * 1 2 3 27 27 H 1.08994 * 109.47512 * 186.05205 * 3 2 1 28 28 H 1.08998 * 109.46912 * 306.05363 * 3 2 1 29 29 H 0.96999 * 120.00208 * 0.02562 * 6 4 3 30 30 H 0.97003 * 119.99825 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47271 * 173.95203 * 15 2 1 32 32 H 1.09000 * 109.47765 * 53.95009 * 15 2 1 33 33 H 1.08001 * 119.84560 * 0.02562 * 17 16 15 34 34 H 1.08002 * 119.92181 * 180.02562 * 18 17 16 35 35 H 1.07990 * 120.07788 * 180.30317 * 19 18 17 36 36 H 1.08003 * 120.08118 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0181 3.3202 1.5234 7 6 1.6924 3.9346 2.7049 8 1 1.1301 3.3987 3.4552 9 6 2.0848 5.2472 2.9366 10 7 1.7722 5.8364 4.0689 11 14 3.0568 6.1744 1.6385 12 1 2.1192 6.8778 0.7266 13 1 3.9432 7.1665 2.2984 14 1 3.8806 5.2162 0.8585 15 6 1.9954 -0.7658 -1.1376 16 6 1.6370 -2.2204 -0.9729 17 6 2.4962 -3.0712 -0.3002 18 6 2.1752 -4.4079 -0.1449 19 6 0.9914 -4.9001 -0.6548 20 6 0.1226 -4.0484 -1.3397 21 6 -1.1048 -4.5538 -1.8772 22 7 -2.0776 -4.9550 -2.3050 23 6 0.4534 -2.7004 -1.4936 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8525 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8308 29 1 2.5228 3.8017 0.8493 30 1 2.0465 6.7526 4.2307 31 1 3.0797 -0.6609 -1.1757 32 1 1.5611 -0.3871 -2.0629 33 1 3.4217 -2.6900 0.1055 34 1 2.8502 -5.0664 0.3816 35 1 0.7398 -5.9427 -0.5286 36 1 -0.2160 -2.0354 -2.0191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061948100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = 34.732247 kcal Electronic energy + Delta-G solvation = -19601.816097 eV Core-core repulsion = 16472.619567 eV Total energy + Delta-G solvation = -3129.196530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97735 -38.67387 -36.92474 -36.18944 -33.94392 -32.03614 -31.67597 -31.51432 -28.06084 -27.14170 -24.74057 -24.05023 -22.68006 -21.43465 -19.37437 -18.51327 -18.18812 -16.55135 -16.18786 -15.94885 -15.36617 -15.07706 -14.74156 -14.56019 -14.18706 -13.84435 -13.64840 -13.38691 -13.22823 -13.03482 -12.84410 -12.44983 -12.39824 -12.02614 -11.96749 -11.55374 -11.49824 -11.36544 -11.14030 -11.05264 -10.60760 -9.98672 -9.54916 -9.20862 -9.08806 -8.60744 -8.19344 -7.99386 -6.31941 -3.83422 0.55872 1.03336 2.43170 2.71849 3.01146 3.05429 3.14110 3.54298 3.64567 3.72578 4.07166 4.10440 4.50608 4.57396 4.73207 4.80248 4.99959 5.10263 5.19574 5.26584 5.36059 5.50936 5.55529 5.61120 5.69937 5.82544 5.83680 5.93593 5.99053 6.07118 6.30645 6.48080 6.55556 7.09739 7.22237 7.24627 7.57478 8.13809 8.59327 8.94604 9.41566 9.82545 10.81215 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036371 B = 0.003277 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.660003 B = 8543.567624 C = 8687.881540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.513 5.513 3 C 0.043 3.957 4 C 0.453 3.547 5 O -0.558 6.558 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.880 3.120 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.088 3.912 16 C -0.071 4.071 17 C -0.064 4.064 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.035 4.035 21 C 0.258 3.742 22 N -0.424 5.424 23 C -0.063 4.063 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.015 0.985 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.370 0.630 30 H 0.273 0.727 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -15.403 -13.663 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.237 5.237 3 C -0.089 4.089 4 C 0.238 3.762 5 O -0.439 6.439 6 N -0.231 5.231 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.039 4.039 16 C -0.071 4.071 17 C -0.083 4.083 18 C -0.139 4.139 19 C -0.093 4.093 20 C -0.039 4.039 21 C -0.057 4.057 22 N -0.099 5.099 23 C -0.084 4.084 24 H 0.082 0.918 25 H 0.116 0.884 26 H 0.034 0.966 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.203 0.797 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.793 -16.449 -13.175 21.259 hybrid contribution 0.883 1.508 -1.447 2.269 sum 3.676 -14.941 -14.621 21.226 Atomic orbital electron populations 1.22643 0.86491 1.02415 1.01552 1.61595 1.09012 1.12464 1.40581 1.21916 1.00847 0.89047 0.97063 1.19621 0.85174 0.82418 0.88977 1.90537 1.42550 1.64067 1.46791 1.42214 1.50993 1.11975 1.17919 1.19423 1.33720 0.96193 0.93950 0.86268 1.25039 0.97895 0.96515 0.96735 1.69624 1.45791 1.13553 1.23210 0.86675 0.80475 0.80545 0.81697 1.19696 1.20202 1.19453 1.21137 1.00906 0.89365 0.92509 1.19668 0.94069 0.95680 0.97714 1.21344 0.99483 0.92832 0.94646 1.21106 0.96722 0.95844 1.00245 1.21149 0.93323 0.99345 0.95527 1.15933 0.90047 0.94177 1.03711 1.25761 0.92945 0.93557 0.93434 1.81249 1.11068 1.08167 1.09417 1.21101 0.96197 0.93123 0.97991 0.91767 0.88419 0.96617 0.89117 0.93221 0.79736 0.91619 0.89464 0.93807 0.84876 0.84869 0.85207 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.77 60.06 0.53 0.78 16 2 N -0.51 -7.45 4.49 -245.83 -1.10 -8.56 16 3 C 0.04 0.66 5.45 -4.97 -0.03 0.63 16 4 C 0.45 9.85 7.48 -10.98 -0.08 9.76 16 5 O -0.56 -14.41 13.91 5.55 0.08 -14.33 16 6 N -0.59 -13.64 5.09 -10.96 -0.06 -13.70 16 7 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 10 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 11 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 15 C 0.09 0.91 5.11 -4.97 -0.03 0.88 16 16 C -0.07 -0.68 4.88 -104.68 -0.51 -1.19 16 17 C -0.06 -0.55 9.69 -39.49 -0.38 -0.93 16 18 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 19 C -0.07 -0.56 9.76 -39.17 -0.38 -0.94 16 20 C -0.04 -0.33 5.73 -106.93 -0.61 -0.94 16 21 C 0.26 2.83 15.33 -22.47 -0.34 2.48 16 22 N -0.42 -5.58 18.54 41.83 0.78 -4.81 16 23 C -0.06 -0.59 7.66 -39.17 -0.30 -0.89 16 24 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16 25 H 0.10 1.84 5.82 -51.93 -0.30 1.54 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 1.19 7.93 -51.93 -0.41 0.77 16 28 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 32 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.12 8.03 -52.48 -0.42 0.69 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -33.02 315.79 -6.46 -39.48 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.19 Total: 6.84 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.79 Total: 0.79 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.39 Total: -51.78 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.02 -6.46 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061948100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.211 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds