Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 111.00213 * 2 1 4 4 C 1.50699 * 109.46760 * 66.04801 * 3 2 1 5 5 O 1.21293 * 120.00231 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99814 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99666 * 180.02562 * 6 4 3 8 8 H 1.07995 * 120.00346 * 359.97438 * 7 6 4 9 9 C 1.38948 * 119.99742 * 180.02562 * 7 6 4 10 10 N 1.31414 * 119.99896 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00082 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47050 * 90.00541 * 11 9 7 13 13 H 1.48502 * 109.47399 * 210.00539 * 11 9 7 14 14 H 1.48507 * 109.47056 * 330.00575 * 11 9 7 15 15 C 1.46898 * 111.00029 * 236.05190 * 2 1 3 16 16 C 1.50705 * 109.46964 * 293.94855 * 15 2 1 17 17 C 1.38379 * 119.92632 * 269.97976 * 16 15 2 18 18 C 1.38342 * 120.30369 * 180.02562 * 17 16 15 19 19 C 1.37972 * 120.15304 * 359.67043 * 18 17 16 20 20 C 1.39616 * 119.84009 * 0.60500 * 19 18 17 21 21 C 1.43205 * 120.14614 * 179.69727 * 20 19 18 22 22 N 6.51485 * 57.01812 * 204.94758 * 2 1 3 23 23 C 1.37927 * 119.91836 * 89.99993 * 16 15 2 24 24 H 1.08996 * 109.47176 * 183.95051 * 1 2 3 25 25 H 1.09006 * 109.46851 * 303.95318 * 1 2 3 26 26 H 1.09000 * 109.47500 * 63.95302 * 1 2 3 27 27 H 1.08994 * 109.47512 * 186.05205 * 3 2 1 28 28 H 1.08998 * 109.46912 * 306.05363 * 3 2 1 29 29 H 0.96999 * 120.00208 * 0.02562 * 6 4 3 30 30 H 0.97003 * 119.99825 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47271 * 173.95203 * 15 2 1 32 32 H 1.09000 * 109.47765 * 53.95009 * 15 2 1 33 33 H 1.08001 * 119.84560 * 0.02562 * 17 16 15 34 34 H 1.08002 * 119.92181 * 180.02562 * 18 17 16 35 35 H 1.07990 * 120.07788 * 180.30317 * 19 18 17 36 36 H 1.08003 * 120.08118 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0181 3.3202 1.5234 7 6 1.6924 3.9346 2.7049 8 1 1.1301 3.3987 3.4552 9 6 2.0848 5.2472 2.9366 10 7 1.7722 5.8364 4.0689 11 14 3.0568 6.1744 1.6385 12 1 2.1192 6.8778 0.7266 13 1 3.9432 7.1665 2.2984 14 1 3.8806 5.2162 0.8585 15 6 1.9954 -0.7658 -1.1376 16 6 1.6370 -2.2204 -0.9729 17 6 2.4962 -3.0712 -0.3002 18 6 2.1752 -4.4079 -0.1449 19 6 0.9914 -4.9001 -0.6548 20 6 0.1226 -4.0484 -1.3397 21 6 -1.1048 -4.5538 -1.8772 22 7 -2.0776 -4.9550 -2.3050 23 6 0.4534 -2.7004 -1.4936 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8525 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8308 29 1 2.5228 3.8017 0.8493 30 1 2.0465 6.7526 4.2307 31 1 3.0797 -0.6609 -1.1757 32 1 1.5611 -0.3871 -2.0629 33 1 3.4217 -2.6900 0.1055 34 1 2.8502 -5.0664 0.3816 35 1 0.7398 -5.9427 -0.5286 36 1 -0.2160 -2.0354 -2.0191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061948100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = 10.962435 kcal Electronic energy + Delta-G solvation = -19602.846834 eV Core-core repulsion = 16472.619567 eV Total energy + Delta-G solvation = -3130.227267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79664 -40.18305 -37.98378 -37.22702 -35.86239 -33.71399 -32.82256 -32.18759 -29.43298 -28.06771 -26.42588 -24.83133 -23.71505 -22.26178 -21.19608 -20.13595 -19.20136 -17.71731 -17.17206 -16.82366 -16.73878 -16.47438 -16.00608 -15.54623 -15.22331 -15.07323 -14.95916 -14.73653 -14.30705 -14.13721 -13.94130 -13.75022 -13.63498 -13.17100 -13.04260 -12.75849 -12.59325 -12.46003 -12.35553 -12.13193 -11.96525 -11.90556 -11.42368 -10.32291 -10.18728 -9.85171 -9.77789 -9.12122 -8.37542 -5.97966 -0.13063 0.39757 1.33028 1.38787 1.47654 1.58313 1.94030 2.02775 2.26586 2.66087 2.87037 3.01937 3.19377 3.40423 3.81694 3.97358 4.15285 4.18276 4.36192 4.42371 4.43219 4.51139 4.58566 4.64625 4.73370 4.84033 4.91650 5.08797 5.23496 5.34714 5.45809 5.57319 5.65295 5.91121 5.96680 6.06603 6.22877 6.41732 6.64763 6.93937 7.45759 8.04310 8.80362 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036371 B = 0.003277 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.660003 B = 8543.567624 C = 8687.881540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.054 3.946 4 C 0.451 3.549 5 O -0.606 6.606 6 N -0.594 5.594 7 C -0.325 4.325 8 H 0.054 0.946 9 C -0.018 4.018 10 N -0.938 5.938 11 Si 0.965 3.035 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.226 1.226 15 C 0.091 3.909 16 C -0.085 4.085 17 C -0.067 4.067 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.050 4.050 21 C 0.280 3.720 22 N -0.471 5.471 23 C -0.066 4.066 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.127 0.873 28 H 0.080 0.920 29 H 0.390 0.610 30 H 0.278 0.722 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 -15.865 -16.688 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.259 5.259 3 C -0.076 4.076 4 C 0.239 3.761 5 O -0.490 6.490 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.072 0.928 9 C -0.216 4.216 10 N -0.579 5.579 11 Si 0.785 3.215 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.150 1.150 15 C -0.035 4.035 16 C -0.086 4.086 17 C -0.086 4.086 18 C -0.137 4.137 19 C -0.088 4.088 20 C -0.053 4.053 21 C -0.034 4.034 22 N -0.147 5.147 23 C -0.087 4.087 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.145 0.855 28 H 0.098 0.902 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.166 0.834 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.452 -16.946 -16.232 24.090 hybrid contribution 0.012 1.505 -0.400 1.557 sum 5.464 -15.441 -16.632 23.343 Atomic orbital electron populations 1.22447 0.87449 1.02208 1.00295 1.61506 1.08452 1.12306 1.43591 1.21859 1.03161 0.89368 0.93254 1.20992 0.82787 0.81681 0.90650 1.90530 1.44078 1.65151 1.49245 1.42045 1.51969 1.12721 1.16892 1.18984 1.34552 0.96905 0.94968 0.92818 1.26128 0.98779 0.97034 0.99653 1.69816 1.47550 1.14299 1.26271 0.85361 0.78861 0.79060 0.78202 1.18400 1.20306 1.14953 1.21224 1.02093 0.88838 0.91337 1.19699 0.94476 0.95696 0.98719 1.21612 0.99719 0.93323 0.93949 1.21409 0.96757 0.95817 0.99696 1.21428 0.92954 1.00108 0.94276 1.16028 0.89798 0.94606 1.04894 1.26022 0.92731 0.92394 0.92276 1.81264 1.12495 1.09700 1.11197 1.21168 0.96337 0.93201 0.98038 0.90985 0.93181 0.94722 0.85498 0.90233 0.77486 0.91275 0.87272 0.92132 0.83762 0.82275 0.83356 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 8.77 127.69 1.12 1.82 16 2 N -0.53 -14.17 4.49 -931.65 -4.18 -18.35 16 3 C 0.05 1.49 5.45 85.56 0.47 1.96 16 4 C 0.45 19.46 7.48 87.66 0.66 20.11 16 5 O -0.61 -32.58 13.91 -3.07 -0.04 -32.63 16 6 N -0.59 -27.06 5.09 -306.98 -1.56 -28.62 16 7 C -0.32 -18.74 10.16 84.04 0.85 -17.89 16 8 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 9 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 10 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 11 Si 0.97 37.93 27.74 68.60 1.90 39.83 16 12 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 13 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 14 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 15 C 0.09 1.52 5.11 85.56 0.44 1.96 16 16 C -0.09 -1.40 4.88 -19.90 -0.10 -1.49 16 17 C -0.07 -0.94 9.69 22.33 0.22 -0.72 16 18 C -0.12 -1.35 10.03 22.23 0.22 -1.13 16 19 C -0.07 -0.86 9.76 22.54 0.22 -0.64 16 20 C -0.05 -0.83 5.73 -21.36 -0.12 -0.96 16 21 C 0.28 5.92 15.33 88.33 1.35 7.28 16 22 N -0.47 -12.35 18.54 19.00 0.35 -12.00 16 23 C -0.07 -1.11 7.66 22.54 0.17 -0.93 16 24 H 0.07 1.91 6.16 -2.39 -0.01 1.90 16 25 H 0.05 1.94 5.82 -2.38 -0.01 1.92 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.13 2.64 7.93 -2.39 -0.02 2.62 16 28 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 29 H 0.39 14.46 5.76 -92.71 -0.53 13.92 16 30 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.11 1.35 7.87 -2.39 -0.02 1.33 16 32 H 0.06 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 35 H 0.15 1.31 8.06 -2.92 -0.02 1.29 16 36 H 0.13 2.05 8.03 -2.91 -0.02 2.02 16 Total: -1.00 -78.97 315.79 3.25 -75.71 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.52 Total: 23.34 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.97 Total: 8.85 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -5.09 Total: -115.10 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.04 Total: -32.63 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.90 Total: 39.83 kcal Total: -78.97 3.25 -75.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061948100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.676 kcal (2) G-P(sol) polarization free energy of solvation -78.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds