Wall clock time and date at job start Mon Mar 30 2020 01:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47572 * 2 1 4 4 C 1.50702 * 109.47090 * 119.99693 * 2 1 3 5 5 H 1.08003 * 119.99851 * 114.28191 * 4 2 1 6 6 C 1.37874 * 120.00215 * 294.28157 * 4 2 1 7 7 N 1.31515 * 120.00144 * 159.76577 * 6 4 2 8 8 Si 1.86803 * 120.00020 * 340.04725 * 6 4 2 9 9 H 1.48501 * 109.47069 * 179.72295 * 8 6 4 10 10 H 1.48498 * 109.46957 * 299.72615 * 8 6 4 11 11 H 1.48501 * 109.47186 * 59.71992 * 8 6 4 12 12 N 1.46503 * 109.47384 * 239.99890 * 2 1 3 13 13 C 1.46505 * 119.99660 * 300.00180 * 12 2 1 14 14 C 1.34775 * 120.00329 * 119.99679 * 12 2 1 15 15 O 1.21589 * 119.99681 * 0.02562 * 14 12 2 16 16 N 1.34771 * 119.99997 * 180.02562 * 14 12 2 17 17 C 1.39545 * 119.99912 * 184.58278 * 16 14 12 18 18 C 1.39112 * 119.91693 * 321.96648 * 17 16 14 19 19 C 1.37695 * 120.07695 * 179.72461 * 18 17 16 20 20 C 1.39770 * 119.91998 * 0.55099 * 19 18 17 21 21 C 1.43199 * 120.08087 * 179.70312 * 20 19 18 22 22 N 9.79450 * 127.44574 * 288.37803 * 2 1 3 23 23 C 1.39779 * 119.84114 * 359.72313 * 20 19 18 24 24 C 1.37688 * 119.91803 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.46995 * 294.44151 * 1 2 3 26 26 H 1.09011 * 109.46946 * 54.43267 * 1 2 3 27 27 H 1.08991 * 109.47444 * 174.43770 * 1 2 3 28 28 H 0.97002 * 119.99846 * 355.21483 * 7 6 4 29 29 H 1.08998 * 109.46670 * 89.99865 * 13 12 2 30 30 H 1.08997 * 109.46966 * 209.99576 * 13 12 2 31 31 H 1.08993 * 109.47309 * 330.00080 * 13 12 2 32 32 H 0.96996 * 120.00094 * 4.58014 * 16 14 12 33 33 H 1.07992 * 119.95953 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.03894 * 180.25038 * 19 18 17 35 35 H 1.08003 * 120.04093 * 179.97438 * 23 20 19 36 36 H 1.08003 * 119.95930 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5749 -1.6392 1.1341 6 6 1.7992 -0.1746 2.4793 7 7 1.8651 -0.9406 3.5463 8 14 1.3819 1.6378 2.6551 9 1 1.1720 1.9606 4.0893 10 1 2.4997 2.4570 2.1217 11 1 0.1423 1.9364 1.8938 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0834 15 8 3.0872 1.1283 -1.8908 16 7 3.2420 -0.6709 -3.1840 17 6 4.1212 -0.0239 -4.0532 18 6 3.9620 1.3323 -4.3186 19 6 4.8311 1.9753 -5.1713 20 6 5.8673 1.2612 -5.7795 21 6 6.7692 1.9250 -6.6719 22 7 7.4851 2.4517 -7.3795 23 6 6.0207 -0.1027 -5.5149 24 6 5.1510 -0.7380 -4.6571 25 1 -0.3633 0.4252 0.9356 26 1 -0.3633 0.5978 -0.8360 27 1 -0.3634 -1.0227 -0.0996 28 1 2.0089 -1.8950 3.4500 29 1 0.7375 -2.1444 -1.9993 30 1 2.4628 -2.5820 -1.9863 31 1 1.5294 -2.5969 -0.4708 32 1 2.9539 -1.5779 -3.3719 33 1 3.1582 1.8824 -3.8521 34 1 4.7093 3.0292 -5.3738 35 1 6.8200 -0.6578 -5.9835 36 1 5.2687 -1.7919 -4.4525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:03 Heat of formation + Delta-G solvation = 38.199624 kcal Electronic energy + Delta-G solvation = -20118.501902 eV Core-core repulsion = 16989.455729 eV Total energy + Delta-G solvation = -3129.046173 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60591 -38.97052 -36.70192 -35.72613 -34.61822 -32.86047 -31.23587 -30.67953 -29.33077 -26.45693 -24.89223 -23.88696 -23.04324 -21.29900 -19.34250 -19.02919 -18.09336 -17.60986 -16.99842 -15.66440 -15.34956 -14.90086 -14.61692 -14.14488 -13.89161 -13.75578 -13.67637 -13.36421 -13.14104 -12.82589 -12.70409 -12.44676 -12.28648 -12.04315 -11.85158 -11.57680 -11.42639 -11.34875 -10.55958 -10.26230 -10.10860 -9.81914 -9.61198 -9.17567 -9.13763 -8.43256 -8.26642 -7.85693 -6.56131 -4.20666 0.64949 1.23381 2.55726 2.75968 2.90871 3.35547 3.46245 3.49897 3.60050 3.81480 3.82673 4.21774 4.42915 4.70225 4.72888 5.11453 5.12560 5.29471 5.36288 5.45274 5.73221 5.77993 5.90573 6.04602 6.18021 6.20470 6.26856 6.35055 6.38788 6.51009 6.75409 6.85976 6.89424 7.27990 7.37800 7.42468 7.80298 8.24889 8.30280 8.71779 8.92411 9.46000 10.79925 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.004050 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.767054 B = 6912.021209 C = 7309.005372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.249 3.751 3 H 0.058 0.942 4 C -0.617 4.617 5 H 0.062 0.938 6 C 0.042 3.958 7 N -0.896 5.896 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.274 1.274 12 N -0.595 5.595 13 C 0.082 3.918 14 C 0.697 3.303 15 O -0.577 6.577 16 N -0.695 5.695 17 C 0.212 3.788 18 C -0.123 4.123 19 C -0.048 4.048 20 C -0.065 4.065 21 C 0.264 3.736 22 N -0.434 5.434 23 C -0.048 4.048 24 C -0.156 4.156 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.269 0.731 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.407 0.593 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -2.420 -16.047 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.148 3.852 3 H 0.075 0.925 4 C -0.655 4.655 5 H 0.080 0.920 6 C -0.165 4.165 7 N -0.528 5.528 8 Si 0.860 3.140 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.200 1.200 12 N -0.329 5.329 13 C -0.062 4.062 14 C 0.399 3.601 15 O -0.454 6.454 16 N -0.343 5.343 17 C 0.114 3.886 18 C -0.144 4.144 19 C -0.069 4.069 20 C -0.069 4.069 21 C -0.050 4.050 22 N -0.110 5.110 23 C -0.069 4.069 24 C -0.177 4.177 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.244 0.756 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.824 0.379 -15.721 15.831 hybrid contribution -0.062 -2.153 -0.827 2.307 sum 1.762 -1.775 -16.547 16.735 Atomic orbital electron populations 1.22487 0.98581 1.00334 1.00321 1.19163 0.90215 0.94564 0.81291 0.92474 1.22132 1.41309 1.11116 0.90915 0.92004 1.25643 0.93476 1.05620 0.91717 1.70869 1.43757 1.06913 1.31282 0.84220 0.77642 0.75875 0.76273 1.20909 1.20385 1.19991 1.47324 1.50818 1.11615 1.23133 1.21605 0.98511 0.83036 1.03044 1.15961 0.79657 0.85023 0.79473 1.90887 1.62282 1.15165 1.77110 1.42946 1.48676 1.18854 1.23864 1.17808 0.89038 0.92511 0.89242 1.21301 1.01336 0.93975 0.97739 1.21051 0.92146 0.99765 0.93931 1.15971 0.96858 0.93405 1.00705 1.25749 0.93023 0.93308 0.92949 1.81237 1.10229 1.08597 1.10953 1.20850 0.97957 0.92148 0.95960 1.20827 0.94674 1.01002 1.01244 0.91654 0.95455 0.93450 0.92096 0.93508 0.93132 0.89406 0.75581 0.83231 0.84866 0.84897 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.98 37.15 0.33 -2.91 16 2 C 0.25 5.69 2.22 -69.08 -0.15 5.54 16 3 H 0.06 1.44 5.51 -51.93 -0.29 1.15 16 4 C -0.62 -16.22 8.33 -34.44 -0.29 -16.51 16 5 H 0.06 1.73 7.37 -52.48 -0.39 1.34 16 6 C 0.04 1.16 5.26 -17.82 -0.09 1.07 16 7 N -0.90 -26.14 13.70 55.43 0.76 -25.38 16 8 Si 1.03 24.45 26.36 -169.99 -4.48 19.97 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -5.92 5.90 56.52 0.33 -5.59 16 12 N -0.60 -11.34 2.75 -181.01 -0.50 -11.84 16 13 C 0.08 1.19 9.04 59.85 0.54 1.73 16 14 C 0.70 12.84 8.10 -86.93 -0.70 12.13 16 15 O -0.58 -12.60 13.28 5.29 0.07 -12.53 16 16 N -0.69 -9.23 5.15 -14.21 -0.07 -9.30 16 17 C 0.21 2.61 6.24 -83.70 -0.52 2.09 16 18 C -0.12 -1.57 8.65 -39.46 -0.34 -1.91 16 19 C -0.05 -0.51 9.75 -39.21 -0.38 -0.89 16 20 C -0.06 -0.66 5.74 -106.82 -0.61 -1.28 16 21 C 0.26 3.06 15.33 -22.47 -0.34 2.71 16 22 N -0.43 -5.93 18.54 41.84 0.78 -5.15 16 23 C -0.05 -0.43 9.75 -39.21 -0.38 -0.81 16 24 C -0.16 -1.48 9.95 -39.46 -0.39 -1.88 16 25 H 0.06 1.40 5.13 -51.93 -0.27 1.13 16 26 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.05 0.90 7.49 -51.93 -0.39 0.51 16 28 H 0.27 7.76 8.73 -40.82 -0.36 7.40 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.56 6.44 -51.93 -0.33 0.23 16 31 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 32 H 0.41 4.08 6.62 -40.82 -0.27 3.81 16 33 H 0.15 2.19 6.43 -52.49 -0.34 1.85 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 308.31 15.07 4.65 4.65 Total: -1.00 -31.96 308.31 -6.11 -38.06 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.96 Total: 2.42 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.34 Total: -0.90 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.96 Total: -51.67 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.07 Total: -12.53 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.48 Total: 19.97 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.96 -6.11 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.263 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds