Wall clock time and date at job start Mon Mar 30 2020 01:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47572 * 2 1 4 4 C 1.50702 * 109.47090 * 119.99693 * 2 1 3 5 5 H 1.08003 * 119.99851 * 114.28191 * 4 2 1 6 6 C 1.37874 * 120.00215 * 294.28157 * 4 2 1 7 7 N 1.31515 * 120.00144 * 159.76577 * 6 4 2 8 8 Si 1.86803 * 120.00020 * 340.04725 * 6 4 2 9 9 H 1.48501 * 109.47069 * 179.72295 * 8 6 4 10 10 H 1.48498 * 109.46957 * 299.72615 * 8 6 4 11 11 H 1.48501 * 109.47186 * 59.71992 * 8 6 4 12 12 N 1.46503 * 109.47384 * 239.99890 * 2 1 3 13 13 C 1.46505 * 119.99660 * 300.00180 * 12 2 1 14 14 C 1.34775 * 120.00329 * 119.99679 * 12 2 1 15 15 O 1.21589 * 119.99681 * 0.02562 * 14 12 2 16 16 N 1.34771 * 119.99997 * 180.02562 * 14 12 2 17 17 C 1.39545 * 119.99912 * 184.58278 * 16 14 12 18 18 C 1.39112 * 119.91693 * 321.96648 * 17 16 14 19 19 C 1.37695 * 120.07695 * 179.72461 * 18 17 16 20 20 C 1.39770 * 119.91998 * 0.55099 * 19 18 17 21 21 C 1.43199 * 120.08087 * 179.70312 * 20 19 18 22 22 N 9.79450 * 127.44574 * 288.37803 * 2 1 3 23 23 C 1.39779 * 119.84114 * 359.72313 * 20 19 18 24 24 C 1.37688 * 119.91803 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.46995 * 294.44151 * 1 2 3 26 26 H 1.09011 * 109.46946 * 54.43267 * 1 2 3 27 27 H 1.08991 * 109.47444 * 174.43770 * 1 2 3 28 28 H 0.97002 * 119.99846 * 355.21483 * 7 6 4 29 29 H 1.08998 * 109.46670 * 89.99865 * 13 12 2 30 30 H 1.08997 * 109.46966 * 209.99576 * 13 12 2 31 31 H 1.08993 * 109.47309 * 330.00080 * 13 12 2 32 32 H 0.96996 * 120.00094 * 4.58014 * 16 14 12 33 33 H 1.07992 * 119.95953 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.03894 * 180.25038 * 19 18 17 35 35 H 1.08003 * 120.04093 * 179.97438 * 23 20 19 36 36 H 1.08003 * 119.95930 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5749 -1.6392 1.1341 6 6 1.7992 -0.1746 2.4793 7 7 1.8651 -0.9406 3.5463 8 14 1.3819 1.6378 2.6551 9 1 1.1720 1.9606 4.0893 10 1 2.4997 2.4570 2.1217 11 1 0.1423 1.9364 1.8938 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0834 15 8 3.0872 1.1283 -1.8908 16 7 3.2420 -0.6709 -3.1840 17 6 4.1212 -0.0239 -4.0532 18 6 3.9620 1.3323 -4.3186 19 6 4.8311 1.9753 -5.1713 20 6 5.8673 1.2612 -5.7795 21 6 6.7692 1.9250 -6.6719 22 7 7.4851 2.4517 -7.3795 23 6 6.0207 -0.1027 -5.5149 24 6 5.1510 -0.7380 -4.6571 25 1 -0.3633 0.4252 0.9356 26 1 -0.3633 0.5978 -0.8360 27 1 -0.3634 -1.0227 -0.0996 28 1 2.0089 -1.8950 3.4500 29 1 0.7375 -2.1444 -1.9993 30 1 2.4628 -2.5820 -1.9863 31 1 1.5294 -2.5969 -0.4708 32 1 2.9539 -1.5779 -3.3719 33 1 3.1582 1.8824 -3.8521 34 1 4.7093 3.0292 -5.3738 35 1 6.8200 -0.6578 -5.9835 36 1 5.2687 -1.7919 -4.4525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:03 Heat of formation + Delta-G solvation = 17.804772 kcal Electronic energy + Delta-G solvation = -20119.386289 eV Core-core repulsion = 16989.455729 eV Total energy + Delta-G solvation = -3129.930561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79739 -40.03796 -37.82089 -37.15366 -35.84654 -34.73155 -32.21793 -32.05566 -30.49630 -27.74353 -26.79025 -25.01244 -23.90080 -22.75680 -20.79750 -19.90393 -19.52787 -19.35075 -18.25656 -16.87957 -16.81911 -16.04465 -15.64572 -15.48935 -15.08715 -14.96926 -14.85792 -14.53112 -14.43939 -14.21847 -13.91191 -13.72290 -13.48280 -13.43887 -13.17827 -13.16369 -12.89522 -12.40222 -12.23155 -11.86332 -11.65471 -11.39098 -11.14717 -11.00006 -10.46729 -9.97148 -9.62146 -9.10594 -8.67790 -6.35952 -0.23948 0.43187 1.46208 1.54056 1.61515 1.63542 1.73952 1.83370 2.23383 2.46407 2.90057 2.93611 2.99285 3.04183 3.92360 3.97847 4.23896 4.30546 4.44348 4.53704 4.60094 4.60784 4.74997 4.80239 4.91737 4.98679 5.09725 5.16684 5.24208 5.35402 5.42918 5.45990 5.68340 5.80847 5.93926 6.04567 6.12756 6.47010 6.60552 6.97267 7.34233 7.54327 8.63367 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.004050 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.767054 B = 6912.021209 C = 7309.005372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.251 3.749 3 H 0.034 0.966 4 C -0.609 4.609 5 H 0.035 0.965 6 C -0.003 4.003 7 N -0.929 5.929 8 Si 1.065 2.935 9 H -0.285 1.285 10 H -0.282 1.282 11 H -0.240 1.240 12 N -0.607 5.607 13 C 0.079 3.921 14 C 0.694 3.306 15 O -0.618 6.618 16 N -0.675 5.675 17 C 0.189 3.811 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.064 4.064 21 C 0.286 3.714 22 N -0.471 5.471 23 C -0.035 4.035 24 C -0.142 4.142 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.258 0.742 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.424 0.576 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -3.173 -18.266 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.147 3.853 3 H 0.052 0.948 4 C -0.647 4.647 5 H 0.053 0.947 6 C -0.204 4.204 7 N -0.564 5.564 8 Si 0.888 3.112 9 H -0.211 1.211 10 H -0.208 1.208 11 H -0.164 1.164 12 N -0.340 5.340 13 C -0.064 4.064 14 C 0.395 3.605 15 O -0.499 6.499 16 N -0.326 5.326 17 C 0.092 3.908 18 C -0.162 4.162 19 C -0.067 4.067 20 C -0.069 4.069 21 C -0.028 4.028 22 N -0.147 5.147 23 C -0.056 4.056 24 C -0.162 4.162 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.264 0.736 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.871 -0.428 -18.009 18.111 hybrid contribution 0.018 -1.986 -0.245 2.001 sum 1.888 -2.414 -18.253 18.509 Atomic orbital electron populations 1.22319 0.96404 1.01519 1.00623 1.18842 0.91741 0.93142 0.81554 0.94824 1.22313 1.39895 1.09927 0.92574 0.94657 1.26728 0.93432 1.08374 0.91849 1.70965 1.46726 1.06469 1.32249 0.83800 0.78852 0.72053 0.76522 1.21076 1.20786 1.16419 1.47216 1.51275 1.13218 1.22340 1.21815 1.01367 0.80528 1.02655 1.16102 0.79299 0.84662 0.80394 1.90861 1.63618 1.17123 1.78282 1.42586 1.48309 1.19261 1.22401 1.18079 0.90117 0.92671 0.89949 1.21166 1.01611 0.94569 0.98858 1.21101 0.91811 1.00406 0.93356 1.16030 0.96327 0.94110 1.00389 1.25803 0.92315 0.92409 0.92233 1.81269 1.11539 1.09684 1.12256 1.21203 0.98071 0.91451 0.94877 1.21088 0.93024 1.02233 0.99869 0.92765 0.93284 0.92231 0.93281 0.90583 0.89536 0.91928 0.73569 0.85750 0.83799 0.81754 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 8.98 71.98 0.65 -5.25 16 2 C 0.25 11.36 2.22 44.24 0.10 11.46 16 3 H 0.03 1.70 5.51 -2.39 -0.01 1.69 16 4 C -0.61 -32.50 8.33 25.60 0.21 -32.29 16 5 H 0.04 2.03 7.37 -2.91 -0.02 2.01 16 6 C 0.00 -0.17 5.26 84.65 0.45 0.28 16 7 N -0.93 -55.59 13.70 21.45 0.29 -55.29 16 8 Si 1.06 49.61 26.36 68.60 1.81 51.41 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.24 -9.81 5.90 99.48 0.59 -9.23 16 12 N -0.61 -22.45 2.75 -844.85 -2.33 -24.78 16 13 C 0.08 2.12 9.04 127.77 1.16 3.27 16 14 C 0.69 24.89 8.10 179.06 1.45 26.34 16 15 O -0.62 -27.21 13.28 -4.00 -0.05 -27.26 16 16 N -0.68 -16.44 5.15 -317.13 -1.63 -18.07 16 17 C 0.19 4.24 6.24 38.33 0.24 4.48 16 18 C -0.14 -3.51 8.65 22.35 0.19 -3.31 16 19 C -0.05 -0.92 9.75 22.51 0.22 -0.70 16 20 C -0.06 -1.15 5.74 -21.29 -0.12 -1.27 16 21 C 0.29 6.02 15.33 88.33 1.35 7.37 16 22 N -0.47 -12.17 18.54 19.00 0.35 -11.81 16 23 C -0.04 -0.48 9.75 22.51 0.22 -0.27 16 24 C -0.14 -2.13 9.95 22.35 0.22 -1.91 16 25 H 0.05 2.23 5.13 -2.38 -0.01 2.21 16 26 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.06 2.15 7.49 -2.39 -0.02 2.13 16 28 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.65 6.44 -2.39 -0.02 1.64 16 31 H 0.06 2.02 6.91 -2.39 -0.02 2.00 16 32 H 0.42 7.04 6.62 -92.71 -0.61 6.43 16 33 H 0.12 3.74 6.43 -2.91 -0.02 3.72 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -72.05 308.31 5.13 -66.92 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.35 Total: 10.67 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.34 Total: 8.21 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.31 Total: -109.96 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.81 Total: 51.41 kcal Total: -72.05 5.13 -66.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.728 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds