Wall clock time and date at job start Mon Mar 30 2020 01:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47281 * 2 1 4 4 C 1.50700 * 109.47363 * 239.99429 * 2 1 3 5 5 H 1.07995 * 120.00313 * 239.99803 * 4 2 1 6 6 C 1.37877 * 119.99478 * 60.00204 * 4 2 1 7 7 N 1.31514 * 120.00537 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99869 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46665 * 60.00355 * 8 6 4 10 10 H 1.48492 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47351 * 300.00334 * 8 6 4 12 12 N 1.46499 * 109.46918 * 119.99470 * 2 1 3 13 13 C 1.46504 * 119.99895 * 60.00473 * 12 2 1 14 14 C 1.34776 * 120.00366 * 240.00182 * 12 2 1 15 15 O 1.21577 * 119.99800 * 6.85842 * 14 12 2 16 16 C 1.47683 * 120.00288 * 186.86114 * 14 12 2 17 17 C 1.40132 * 119.89855 * 20.70128 * 16 14 12 18 18 C 1.36441 * 120.45375 * 179.75527 * 17 16 14 19 19 C 1.39065 * 120.14178 * 0.52299 * 18 17 16 20 20 N 1.37800 * 133.86522 * 179.76829 * 19 18 17 21 21 H 0.96999 * 126.30489 * 359.96659 * 20 19 18 22 22 C 1.36093 * 107.39418 * 179.97438 * 20 19 18 23 23 N 1.30066 * 110.12712 * 359.97438 * 22 20 19 24 24 C 1.35871 * 109.56227 * 359.97438 * 23 22 20 25 25 C 1.39117 * 119.90268 * 200.97374 * 16 14 12 26 26 H 1.09003 * 109.46939 * 60.00227 * 1 2 3 27 27 H 1.09000 * 109.47340 * 300.00232 * 1 2 3 28 28 H 1.08993 * 109.47092 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00201 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47176 * 87.15306 * 13 12 2 31 31 H 1.09001 * 109.47083 * 207.15575 * 13 12 2 32 32 H 1.09001 * 109.46879 * 327.15019 * 13 12 2 33 33 H 1.07995 * 119.77588 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.92858 * 180.25203 * 18 17 16 35 35 H 1.07995 * 124.93985 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.24534 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8271 -0.4202 -5.2203 11 1 3.8076 -1.1192 -4.0076 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 2.9846 1.1585 1.9581 16 6 3.4096 -0.7682 3.2078 17 6 3.5661 -2.1587 3.1333 18 6 4.1387 -2.8463 4.1634 19 6 4.5628 -2.1716 5.3030 20 7 5.1566 -2.5676 6.4818 21 1 5.3967 -3.4748 6.7274 22 6 5.3438 -1.4518 7.2380 23 7 4.9071 -0.4032 6.6044 24 6 4.4097 -0.7761 5.3962 25 6 3.8280 -0.0765 4.3400 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.7089 1.1611 -3.4845 30 1 2.3880 -2.7377 0.9291 31 1 1.6731 -2.2978 2.4987 32 1 0.6688 -2.2873 1.0292 33 1 3.2345 -2.6894 2.2532 34 1 4.2589 -3.9174 4.0953 35 1 5.7902 -1.4387 8.2213 36 1 3.7033 0.9946 4.4002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:21 Heat of formation + Delta-G solvation = 39.085214 kcal Electronic energy + Delta-G solvation = -20506.495719 eV Core-core repulsion = 17377.487948 eV Total energy + Delta-G solvation = -3129.007771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.10632 -41.03178 -37.93789 -37.24258 -34.83775 -34.18097 -31.99093 -31.08504 -29.95310 -27.89984 -27.28514 -25.20705 -23.71128 -22.74967 -22.39144 -20.36971 -19.10399 -18.84098 -18.28744 -17.43213 -16.90625 -16.48915 -16.32269 -15.96290 -15.58871 -15.03572 -14.90513 -14.58693 -14.40422 -14.35176 -13.69036 -13.46880 -13.14249 -12.91400 -12.79864 -12.68439 -12.58631 -12.20027 -12.10854 -11.92518 -11.76599 -11.17348 -11.02882 -10.76984 -10.49127 -9.52983 -9.34521 -9.16910 -8.12171 -6.29624 -0.14916 0.10487 1.44202 1.47253 1.54482 1.79994 2.00847 2.01870 2.27400 2.48702 2.86632 3.15745 3.33341 3.63090 3.74809 4.10415 4.25654 4.35957 4.40225 4.46903 4.62157 4.68511 4.79478 4.89675 4.94376 5.02356 5.05664 5.23987 5.36018 5.38059 5.48192 5.61316 5.67844 5.75969 6.05154 6.16053 6.52268 6.76883 6.78894 6.88983 7.28880 7.45879 8.92391 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.035042 B = 0.004237 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.852464 B = 6606.643930 C = 6903.269249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.067 0.933 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.591 5.591 13 C 0.069 3.931 14 C 0.538 3.462 15 O -0.607 6.607 16 C -0.144 4.144 17 C -0.096 4.096 18 C -0.099 4.099 19 C 0.065 3.935 20 N -0.581 5.581 21 H 0.447 0.553 22 C 0.284 3.716 23 N -0.546 5.546 24 C 0.008 3.992 25 C -0.029 4.029 26 H 0.069 0.931 27 H 0.016 0.984 28 H 0.052 0.948 29 H 0.264 0.736 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.270 0.730 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -16.063 18.369 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.320 5.320 13 C -0.072 4.072 14 C 0.328 3.672 15 O -0.491 6.491 16 C -0.150 4.150 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.048 4.048 20 N -0.195 5.195 21 H 0.291 0.709 22 C -0.004 4.004 23 N -0.266 5.266 24 C -0.108 4.108 25 C -0.050 4.050 26 H 0.088 0.912 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.193 0.807 34 H 0.192 0.808 35 H 0.286 0.714 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.908 -14.481 18.412 24.421 hybrid contribution 0.185 -0.470 -1.226 1.326 sum 7.092 -14.951 17.186 23.857 Atomic orbital electron populations 1.21888 0.97069 1.00351 0.99866 1.18601 0.91826 0.92188 0.81496 0.97626 1.21548 1.32071 1.13267 0.90789 0.91494 1.25786 0.95020 0.95630 1.02160 1.70033 1.37317 1.23998 1.24512 0.85455 0.78356 0.79068 0.77803 1.18281 1.21166 1.20253 1.48073 1.48317 1.13606 1.21978 1.22487 1.01866 0.80502 1.02346 1.18871 0.79011 0.86413 0.82874 1.90682 1.64298 1.17386 1.76738 1.19552 1.05754 0.95382 0.94293 1.21958 0.97060 0.91579 1.00933 1.20021 1.00358 1.01582 0.89969 1.19213 1.00561 0.94355 0.90672 1.43118 1.50819 1.12442 1.13104 0.70921 1.26425 0.95860 0.79093 0.99004 1.70446 1.19107 1.31363 1.05699 1.18958 1.05189 0.92146 0.94528 1.20214 0.94918 0.99239 0.90587 0.91225 0.96514 0.92877 0.92651 0.90580 0.88210 0.90899 0.80744 0.80796 0.71441 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 8.94 71.98 0.64 -6.00 16 2 C 0.26 14.08 2.63 44.25 0.12 14.20 16 3 H 0.01 0.37 6.92 -2.39 -0.02 0.36 16 4 C -0.54 -29.44 8.37 25.60 0.21 -29.23 16 5 H 0.07 3.47 7.57 -2.91 -0.02 3.44 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.97 42.95 29.54 68.60 2.03 44.97 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 N -0.59 -26.37 2.75 -830.37 -2.29 -28.66 16 13 C 0.07 2.17 7.90 127.77 1.01 3.18 16 14 C 0.54 25.14 7.51 86.74 0.65 25.79 16 15 O -0.61 -34.53 15.86 -3.96 -0.06 -34.60 16 16 C -0.14 -5.22 5.56 -20.11 -0.11 -5.33 16 17 C -0.10 -2.47 7.54 22.31 0.17 -2.30 16 18 C -0.10 -1.85 10.00 22.05 0.22 -1.63 16 19 C 0.06 1.36 7.30 39.00 0.28 1.65 16 20 N -0.58 -6.57 6.22 -190.98 -1.19 -7.76 16 21 H 0.45 0.82 8.96 -92.71 -0.83 -0.02 16 22 C 0.28 3.82 12.97 180.05 2.33 6.15 16 23 N -0.55 -14.47 11.28 -192.08 -2.17 -16.64 16 24 C 0.01 0.25 7.22 39.40 0.28 0.54 16 25 C -0.03 -1.05 9.63 22.76 0.22 -0.83 16 26 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 2.35 6.67 -2.39 -0.02 2.33 16 29 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.08 2.10 6.84 -2.39 -0.02 2.08 16 31 H 0.10 2.49 5.33 -2.39 -0.01 2.48 16 32 H 0.07 2.27 6.43 -2.39 -0.02 2.25 16 33 H 0.18 3.93 3.99 -2.91 -0.01 3.92 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.27 0.29 8.06 -2.91 -0.02 0.27 16 36 H 0.11 4.47 7.78 -2.91 -0.02 4.45 16 Total: -1.00 -83.95 298.29 3.36 -80.60 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.31 Total: 8.34 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.48 Total: 7.37 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -5.40 Total: -106.69 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.06 Total: -34.60 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -83.95 3.36 -80.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.683 kcal (2) G-P(sol) polarization free energy of solvation -83.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds