Wall clock time and date at job start Mon Mar 30 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99853 * 2 1 4 4 C 1.50700 * 109.46817 * 90.00381 * 3 2 1 5 5 H 1.07994 * 120.00368 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99729 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00275 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46878 * 90.00457 * 8 6 4 10 10 H 1.48505 * 109.46657 * 210.00339 * 8 6 4 11 11 H 1.48494 * 109.47355 * 330.00265 * 8 6 4 12 12 C 1.34775 * 120.00318 * 180.28320 * 2 1 3 13 13 O 1.21599 * 119.99822 * 179.97438 * 12 2 1 14 14 N 1.34773 * 120.00196 * 359.97438 * 12 2 1 15 15 C 1.40171 * 120.00507 * 174.63338 * 14 12 2 16 16 C 1.39392 * 119.88307 * 326.45769 * 15 14 12 17 17 C 1.37648 * 120.60810 * 179.71658 * 16 15 14 18 18 C 1.39118 * 120.01311 * 0.54857 * 17 16 15 19 19 N 1.37896 * 133.33288 * 179.74790 * 18 17 16 20 20 H 0.97000 * 125.07915 * 0.02562 * 19 18 17 21 21 C 1.36805 * 109.85276 * 179.97438 * 19 18 17 22 22 C 1.34245 * 109.93901 * 0.02562 * 21 19 18 23 23 C 1.40627 * 119.54579 * 359.72810 * 18 17 16 24 24 C 1.38183 * 119.88372 * 146.72353 * 15 14 12 25 25 H 1.09004 * 109.46339 * 269.72002 * 1 2 3 26 26 H 1.08989 * 109.47521 * 29.71670 * 1 2 3 27 27 H 1.09004 * 109.47125 * 149.72412 * 1 2 3 28 28 H 1.08995 * 109.47190 * 210.00520 * 3 2 1 29 29 H 1.09003 * 109.47269 * 330.00982 * 3 2 1 30 30 H 0.97001 * 119.99864 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99542 * 354.63957 * 14 12 2 32 32 H 1.08009 * 119.69633 * 359.97045 * 16 15 14 33 33 H 1.08003 * 119.99119 * 180.30213 * 17 16 15 34 34 H 1.07996 * 125.03168 * 180.02562 * 21 19 18 35 35 H 1.08000 * 126.49188 * 180.02562 * 22 21 19 36 36 H 1.08006 * 120.20068 * 0.02665 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0982 1.0957 2.2417 6 6 3.1269 2.8774 1.6728 7 7 3.5542 3.6176 0.6733 8 14 3.4389 3.4162 3.4341 9 1 4.7339 2.8586 3.9002 10 1 3.4871 4.8991 3.4969 11 1 2.3438 2.9192 4.3051 12 6 2.1389 -1.1671 -0.0058 13 8 3.3549 -1.1670 -0.0062 14 7 1.4652 -2.3344 -0.0110 15 6 2.1614 -3.5451 -0.1305 16 6 3.3224 -3.6056 -0.8995 17 6 4.0210 -4.7852 -1.0224 18 6 3.5638 -5.9343 -0.3853 19 7 4.0287 -7.2311 -0.3242 20 1 4.8280 -7.5581 -0.7659 21 6 3.1949 -7.9874 0.4532 22 6 2.1856 -7.2308 0.9125 23 6 2.3897 -5.8786 0.3868 24 6 1.6913 -4.6757 0.5099 25 1 -0.3632 -0.0050 1.0277 26 1 -0.3634 0.8924 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 3.1498 1.1385 -0.5139 29 1 1.6083 2.0285 -0.5137 30 1 4.0316 4.4431 0.8506 31 1 0.4983 -2.3366 0.0678 32 1 3.6794 -2.7177 -1.4003 33 1 4.9221 -4.8197 -1.6168 34 1 3.3289 -9.0377 0.6660 35 1 1.3768 -7.5568 1.5496 36 1 0.7890 -4.6293 1.1018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085580168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:43 Heat of formation + Delta-G solvation = 44.195453 kcal Electronic energy + Delta-G solvation = -20074.313995 eV Core-core repulsion = 16945.527821 eV Total energy + Delta-G solvation = -3128.786175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11515 -39.70889 -36.92748 -34.76013 -33.71661 -32.43392 -31.73814 -28.69858 -28.45914 -27.43806 -25.68887 -23.22271 -22.69561 -21.41879 -20.64391 -19.29997 -17.93298 -17.54267 -16.75306 -16.51053 -15.66694 -15.02521 -14.62381 -14.34617 -14.08498 -13.93280 -13.61329 -13.14749 -13.03628 -12.77221 -12.49764 -12.40756 -12.09908 -11.93946 -11.64961 -11.18365 -10.84943 -10.82253 -10.55065 -10.11529 -9.79907 -9.61282 -9.40694 -9.22362 -8.39934 -7.80682 -7.69142 -7.26605 -6.01011 -4.05218 1.25089 1.77926 2.76735 3.13323 3.30929 3.34366 3.40310 3.43983 3.79665 4.22820 4.43579 4.58523 4.79910 4.89825 5.24095 5.32749 5.40384 5.51617 5.55580 5.62541 5.75203 5.91934 5.99660 6.13914 6.23468 6.32803 6.54174 6.73615 6.82628 6.91716 6.97065 7.37964 7.40854 7.54307 7.55216 7.72699 7.97361 8.26760 8.63455 8.95739 9.29979 9.60166 11.06896 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028926 B = 0.003834 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.747198 B = 7300.637433 C = 7503.575773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.613 5.613 3 C 0.260 3.740 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.698 3.302 13 O -0.569 6.569 14 N -0.696 5.696 15 C 0.163 3.837 16 C -0.091 4.091 17 C -0.114 4.114 18 C 0.073 3.927 19 N -0.600 5.600 20 H 0.412 0.588 21 C 0.046 3.954 22 C -0.209 4.209 23 C -0.089 4.089 24 C -0.118 4.118 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.400 0.600 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -20.522 -3.468 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.349 5.349 3 C 0.141 3.859 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.399 3.601 13 O -0.445 6.445 14 N -0.346 5.346 15 C 0.067 3.933 16 C -0.113 4.113 17 C -0.135 4.135 18 C -0.033 4.033 19 N -0.203 5.203 20 H 0.248 0.752 21 C -0.080 4.080 22 C -0.235 4.235 23 C -0.094 4.094 24 C -0.141 4.141 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.237 0.763 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.131 -20.242 -3.575 20.966 hybrid contribution 0.019 0.232 0.971 0.999 sum -4.112 -20.009 -2.604 20.593 Atomic orbital electron populations 1.21582 0.81683 1.01561 1.01116 1.47490 1.05729 1.06369 1.75295 1.19257 0.92386 0.76834 0.97468 1.21468 1.36346 1.06178 0.92462 0.92492 1.24924 0.95380 0.96383 0.97416 1.69929 1.38476 1.14434 1.30683 0.86499 0.78785 0.77456 0.84674 1.20561 1.21170 1.19964 1.15911 0.85575 0.80038 0.78526 1.90901 1.11321 1.85562 1.56740 1.42958 1.09852 1.03711 1.78036 1.17243 0.94469 0.84754 0.96853 1.20969 0.94797 0.97494 0.98005 1.19865 1.01064 0.90024 1.02551 1.18246 0.96634 0.85622 1.02786 1.41757 1.25313 1.07606 1.45665 0.75163 1.21721 0.92541 0.96975 0.96787 1.21617 1.02090 0.91771 1.08049 1.18848 0.95795 0.93693 1.01055 1.20070 1.01841 0.90832 1.01309 0.93183 0.90916 0.93164 0.93682 0.94769 0.92746 0.76321 0.84001 0.86166 0.81681 0.83956 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.33 10.20 59.85 0.61 1.95 16 2 N -0.61 -13.24 2.86 -188.74 -0.54 -13.78 16 3 C 0.26 6.86 5.21 -5.19 -0.03 6.83 16 4 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.20 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.70 15.22 8.01 -86.92 -0.70 14.52 16 13 O -0.57 -14.77 13.61 5.28 0.07 -14.70 16 14 N -0.70 -11.78 5.18 -14.20 -0.07 -11.85 16 15 C 0.16 2.72 6.27 -83.63 -0.52 2.19 16 16 C -0.09 -1.56 8.62 -39.37 -0.34 -1.90 16 17 C -0.11 -1.64 10.06 -39.47 -0.40 -2.04 16 18 C 0.07 0.99 7.27 -83.91 -0.61 0.38 16 19 N -0.60 -5.99 6.08 -10.62 -0.06 -6.06 16 20 H 0.41 2.81 8.96 -40.82 -0.37 2.45 16 21 C 0.05 0.42 11.81 -16.74 -0.20 0.22 16 22 C -0.21 -2.33 11.08 -37.66 -0.42 -2.75 16 23 C -0.09 -1.25 6.37 -105.14 -0.67 -1.92 16 24 C -0.12 -1.72 10.01 -39.08 -0.39 -2.11 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.09 7.89 -51.94 -0.41 0.68 16 27 H 0.05 0.60 6.45 -51.93 -0.33 0.27 16 28 H 0.05 1.33 7.41 -51.93 -0.39 0.95 16 29 H 0.03 0.90 7.89 -51.93 -0.41 0.49 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.40 5.38 6.63 -40.82 -0.27 5.11 16 32 H 0.14 2.68 6.41 -52.48 -0.34 2.35 16 33 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -35.54 309.76 -8.47 -44.01 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.17 Total: 5.03 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -4.08 Total: 1.57 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.06 Total: -57.78 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.07 Total: -14.70 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.54 -8.47 -44.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085580168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.210 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds