Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99853 * 2 1 4 4 C 1.50700 * 109.46817 * 90.00381 * 3 2 1 5 5 H 1.07994 * 120.00368 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99729 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00275 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46878 * 90.00457 * 8 6 4 10 10 H 1.48505 * 109.46657 * 210.00339 * 8 6 4 11 11 H 1.48494 * 109.47355 * 330.00265 * 8 6 4 12 12 C 1.34775 * 120.00318 * 180.28320 * 2 1 3 13 13 O 1.21599 * 119.99822 * 179.97438 * 12 2 1 14 14 N 1.34773 * 120.00196 * 359.97438 * 12 2 1 15 15 C 1.40171 * 120.00507 * 174.63338 * 14 12 2 16 16 C 1.39392 * 119.88307 * 326.45769 * 15 14 12 17 17 C 1.37648 * 120.60810 * 179.71658 * 16 15 14 18 18 C 1.39118 * 120.01311 * 0.54857 * 17 16 15 19 19 N 1.37896 * 133.33288 * 179.74790 * 18 17 16 20 20 H 0.97000 * 125.07915 * 0.02562 * 19 18 17 21 21 C 1.36805 * 109.85276 * 179.97438 * 19 18 17 22 22 C 1.34245 * 109.93901 * 0.02562 * 21 19 18 23 23 C 1.40627 * 119.54579 * 359.72810 * 18 17 16 24 24 C 1.38183 * 119.88372 * 146.72353 * 15 14 12 25 25 H 1.09004 * 109.46339 * 269.72002 * 1 2 3 26 26 H 1.08989 * 109.47521 * 29.71670 * 1 2 3 27 27 H 1.09004 * 109.47125 * 149.72412 * 1 2 3 28 28 H 1.08995 * 109.47190 * 210.00520 * 3 2 1 29 29 H 1.09003 * 109.47269 * 330.00982 * 3 2 1 30 30 H 0.97001 * 119.99864 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99542 * 354.63957 * 14 12 2 32 32 H 1.08009 * 119.69633 * 359.97045 * 16 15 14 33 33 H 1.08003 * 119.99119 * 180.30213 * 17 16 15 34 34 H 1.07996 * 125.03168 * 180.02562 * 21 19 18 35 35 H 1.08000 * 126.49188 * 180.02562 * 22 21 19 36 36 H 1.08006 * 120.20068 * 0.02665 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0982 1.0957 2.2417 6 6 3.1269 2.8774 1.6728 7 7 3.5542 3.6176 0.6733 8 14 3.4389 3.4162 3.4341 9 1 4.7339 2.8586 3.9002 10 1 3.4871 4.8991 3.4969 11 1 2.3438 2.9192 4.3051 12 6 2.1389 -1.1671 -0.0058 13 8 3.3549 -1.1670 -0.0062 14 7 1.4652 -2.3344 -0.0110 15 6 2.1614 -3.5451 -0.1305 16 6 3.3224 -3.6056 -0.8995 17 6 4.0210 -4.7852 -1.0224 18 6 3.5638 -5.9343 -0.3853 19 7 4.0287 -7.2311 -0.3242 20 1 4.8280 -7.5581 -0.7659 21 6 3.1949 -7.9874 0.4532 22 6 2.1856 -7.2308 0.9125 23 6 2.3897 -5.8786 0.3868 24 6 1.6913 -4.6757 0.5099 25 1 -0.3632 -0.0050 1.0277 26 1 -0.3634 0.8924 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 3.1498 1.1385 -0.5139 29 1 1.6083 2.0285 -0.5137 30 1 4.0316 4.4431 0.8506 31 1 0.4983 -2.3366 0.0678 32 1 3.6794 -2.7177 -1.4003 33 1 4.9221 -4.8197 -1.6168 34 1 3.3289 -9.0377 0.6660 35 1 1.3768 -7.5568 1.5496 36 1 0.7890 -4.6293 1.1018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085580168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = 20.039308 kcal Electronic energy + Delta-G solvation = -20075.361484 eV Core-core repulsion = 16945.527821 eV Total energy + Delta-G solvation = -3129.833664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13304 -41.21548 -38.20880 -36.52998 -35.25095 -34.40652 -32.74729 -30.13887 -29.58283 -28.95618 -27.28836 -25.10888 -23.81618 -22.75199 -21.55772 -20.74809 -19.24204 -18.72851 -18.67236 -18.10277 -16.92450 -16.79551 -16.28996 -15.79513 -15.31456 -15.12021 -14.75715 -14.69226 -14.36803 -13.97983 -13.88337 -13.71265 -13.49943 -13.34024 -13.15287 -12.93850 -12.72579 -12.53081 -12.17416 -11.90101 -11.70921 -11.14032 -10.81982 -10.63413 -10.55598 -9.48156 -8.80768 -8.41041 -8.19932 -6.35308 0.19803 0.60491 1.36895 1.40387 1.49696 1.76051 1.91701 2.22093 2.36543 2.40333 2.99944 3.06986 3.11836 3.83468 4.04636 4.27869 4.31577 4.40825 4.48095 4.62707 4.65977 4.76296 4.84237 4.98512 5.05625 5.17013 5.21641 5.29059 5.42913 5.56143 5.58928 5.81072 5.87281 5.90097 6.07678 6.13472 6.27281 6.73154 6.81258 7.08992 7.31654 7.66716 8.85830 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028926 B = 0.003834 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.747198 B = 7300.637433 C = 7503.575773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.621 5.621 3 C 0.276 3.724 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.263 1.263 12 C 0.693 3.307 13 O -0.622 6.622 14 N -0.674 5.674 15 C 0.133 3.867 16 C -0.123 4.123 17 C -0.112 4.112 18 C 0.061 3.939 19 N -0.589 5.589 20 H 0.429 0.571 21 C 0.072 3.928 22 C -0.233 4.233 23 C -0.107 4.107 24 C -0.112 4.112 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.000 1.000 29 H 0.031 0.969 30 H 0.267 0.733 31 H 0.418 0.582 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.215 0.785 35 H 0.164 0.836 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -23.436 -2.010 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.356 5.356 3 C 0.154 3.846 4 C -0.582 4.582 5 H 0.068 0.932 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.187 1.187 12 C 0.395 3.605 13 O -0.502 6.502 14 N -0.326 5.326 15 C 0.038 3.962 16 C -0.145 4.145 17 C -0.133 4.133 18 C -0.046 4.046 19 N -0.194 5.194 20 H 0.268 0.732 21 C -0.055 4.055 22 C -0.257 4.257 23 C -0.113 4.113 24 C -0.134 4.134 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.018 0.982 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.257 0.743 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.231 0.769 35 H 0.181 0.819 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.281 -23.218 -2.131 23.906 hybrid contribution 0.387 0.920 0.470 1.103 sum -4.895 -22.298 -1.661 22.889 Atomic orbital electron populations 1.21887 0.77947 1.03983 1.02501 1.47355 1.07978 1.04855 1.75385 1.18728 0.91003 0.78903 0.95975 1.21726 1.36829 1.06475 0.93182 0.93152 1.25831 0.94899 0.96391 1.01942 1.70041 1.38896 1.14874 1.32933 0.85429 0.78543 0.77597 0.79304 1.20839 1.19718 1.18713 1.16094 0.85103 0.81121 0.78200 1.90857 1.13841 1.86514 1.58947 1.42564 1.10472 1.02424 1.77093 1.17423 0.95186 0.85016 0.98621 1.20813 0.96296 0.97524 0.99818 1.19962 1.01165 0.89729 1.02424 1.18310 0.96936 0.86777 1.02619 1.41875 1.25915 1.06271 1.45349 0.73222 1.22516 0.90550 0.98563 0.93859 1.21962 1.03965 0.90385 1.09434 1.19334 0.95865 0.94882 1.01218 1.20261 1.02325 0.90271 1.00532 0.92204 0.90211 0.89117 0.98205 0.95071 0.92364 0.74272 0.87264 0.84512 0.76860 0.81874 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.42 10.20 127.77 1.30 3.72 16 2 N -0.62 -27.63 2.86 -869.30 -2.48 -30.12 16 3 C 0.28 15.27 5.21 85.63 0.45 15.71 16 4 C -0.54 -32.23 9.39 25.60 0.24 -31.99 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.49 5.46 84.66 0.46 0.95 16 7 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 8 Si 0.97 45.97 29.54 68.60 2.03 47.99 16 9 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 12 C 0.69 31.58 8.01 179.06 1.43 33.01 16 13 O -0.62 -34.56 13.61 -4.03 -0.05 -34.61 16 14 N -0.67 -23.20 5.18 -317.11 -1.64 -24.84 16 15 C 0.13 4.53 6.27 38.07 0.24 4.77 16 16 C -0.12 -4.45 8.62 22.41 0.19 -4.26 16 17 C -0.11 -3.27 10.06 22.34 0.22 -3.05 16 18 C 0.06 1.56 7.27 38.98 0.28 1.85 16 19 N -0.59 -9.80 6.08 -187.51 -1.14 -10.94 16 20 H 0.43 4.33 8.96 -92.71 -0.83 3.50 16 21 C 0.07 0.96 11.81 83.01 0.98 1.95 16 22 C -0.23 -4.34 11.08 23.51 0.26 -4.08 16 23 C -0.11 -2.83 6.37 -20.20 -0.13 -2.96 16 24 C -0.11 -3.16 10.01 22.60 0.23 -2.94 16 25 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.08 2.33 7.89 -2.39 -0.02 2.31 16 27 H 0.09 2.01 6.45 -2.38 -0.02 1.99 16 28 H 0.00 -0.01 7.41 -2.39 -0.02 -0.03 16 29 H 0.03 1.72 7.89 -2.39 -0.02 1.70 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.42 10.81 6.63 -92.70 -0.61 10.20 16 32 H 0.11 4.60 6.41 -2.91 -0.02 4.58 16 33 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -81.77 309.76 2.84 -78.94 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -0.32 Total: 17.50 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.16 Total: 12.70 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -4.98 Total: -122.52 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.05 Total: -34.61 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -81.77 2.84 -78.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085580168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.977 kcal (2) G-P(sol) polarization free energy of solvation -81.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds