Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46879 * 2 1 4 4 C 1.50694 * 109.47348 * 239.99662 * 2 1 3 5 5 N 1.30980 * 126.43882 * 105.34344 * 4 2 1 6 6 C 1.35213 * 105.57933 * 180.14192 * 5 4 2 7 7 C 1.48424 * 126.41819 * 179.84756 * 6 5 4 8 8 C 1.39333 * 120.11488 * 359.69165 * 7 6 5 9 9 C 1.38025 * 119.87846 * 180.02562 * 8 7 6 10 10 C 1.38314 * 120.11908 * 359.97438 * 9 8 7 11 11 C 1.38322 * 120.24266 * 0.02562 * 10 9 8 12 12 C 1.38017 * 120.12184 * 359.97438 * 11 10 9 13 13 N 1.30758 * 107.17551 * 359.58357 * 6 5 4 14 14 O 1.21294 * 110.09655 * 0.26140 * 13 6 5 15 15 N 1.46496 * 109.47142 * 119.99119 * 2 1 3 16 16 C 1.46505 * 119.99653 * 60.00728 * 15 2 1 17 17 C 1.36937 * 120.00426 * 240.00057 * 15 2 1 18 18 H 1.08002 * 119.99938 * 23.58193 * 17 15 2 19 19 C 1.38814 * 120.00133 * 203.57896 * 17 15 2 20 20 N 1.31610 * 120.00252 * 11.38677 * 19 17 15 21 21 Si 1.86805 * 119.99890 * 191.38612 * 19 17 15 22 22 H 1.48500 * 109.46994 * 89.99876 * 21 19 17 23 23 H 1.48496 * 109.46775 * 210.00030 * 21 19 17 24 24 H 1.48498 * 109.46808 * 330.00065 * 21 19 17 25 25 H 1.08993 * 109.46953 * 60.00810 * 1 2 3 26 26 H 1.09002 * 109.46452 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47447 * 300.00003 * 1 2 3 28 28 H 1.08001 * 120.05895 * 0.04587 * 8 7 6 29 29 H 1.07996 * 119.93952 * 180.27188 * 9 8 7 30 30 H 1.07995 * 119.88153 * 179.97438 * 10 9 8 31 31 H 1.08005 * 119.94118 * 179.97438 * 11 10 9 32 32 H 1.08005 * 120.06632 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47433 * 94.44083 * 16 15 2 34 34 H 1.09003 * 109.46810 * 214.43747 * 16 15 2 35 35 H 1.08993 * 109.47288 * 334.43144 * 16 15 2 36 36 H 0.97002 * 120.00897 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.5546 -0.1507 -2.2932 6 6 2.8528 -1.1695 -3.1307 7 6 3.4652 -1.0524 -4.4777 8 6 3.7842 0.2018 -4.9939 9 6 4.3530 0.3050 -6.2473 10 6 4.6068 -0.8337 -6.9902 11 6 4.2921 -2.0813 -6.4825 12 6 3.7230 -2.1961 -5.2304 13 7 2.5059 -2.2777 -2.5296 14 8 2.0343 -2.0307 -1.4397 15 7 2.0184 -0.6904 1.1962 16 6 1.6645 -2.0930 1.4281 17 6 2.8056 -0.0249 2.0976 18 1 2.7652 1.0527 2.1576 19 6 3.6556 -0.7352 2.9342 20 7 3.8755 -2.0144 2.7166 21 14 4.4874 0.1247 4.3689 22 1 3.6240 0.0261 5.5730 23 1 5.7953 -0.5229 4.6431 24 1 4.7041 1.5544 4.0308 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.5871 1.0915 -4.4143 29 1 4.6048 1.2763 -6.6466 30 1 5.0516 -0.7485 -7.9706 31 1 4.4920 -2.9673 -7.0670 32 1 3.4772 -3.1707 -4.8350 33 1 2.4551 -2.7360 1.0412 34 1 1.5466 -2.2659 2.4979 35 1 0.7286 -2.3208 0.9181 36 1 4.4692 -2.5109 3.3013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114716959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = 116.733471 kcal Electronic energy + Delta-G solvation = -20423.392014 eV Core-core repulsion = 17297.751323 eV Total energy + Delta-G solvation = -3125.640690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.83217 -39.11155 -36.60524 -35.20460 -33.04158 -31.61576 -30.99964 -30.09864 -29.09236 -26.18862 -24.47936 -24.33069 -23.12741 -22.05519 -21.57303 -19.73720 -17.49399 -17.33469 -16.88787 -16.28573 -15.50525 -15.17800 -14.86525 -14.33410 -13.92235 -13.60284 -13.46768 -13.20142 -13.05222 -12.57464 -12.12888 -11.83141 -11.68216 -11.41262 -11.25572 -11.18437 -10.93268 -10.86527 -10.78536 -10.52942 -10.41417 -10.13553 -10.02532 -9.65883 -9.02509 -8.72602 -8.51918 -7.06264 -5.90223 -3.41448 0.87263 1.33173 1.95167 2.87935 3.30817 3.37346 3.39138 3.56848 3.85197 3.91712 4.30820 4.48935 4.87077 4.92924 5.02583 5.27319 5.27827 5.35785 5.41767 5.60449 5.75267 5.80737 5.86429 5.97217 6.11162 6.22521 6.36627 6.38672 6.40684 6.54777 6.56785 6.66185 6.77435 6.86067 7.26595 7.63404 7.69704 8.18321 8.76610 9.01605 9.60547 10.08261 11.12708 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.004413 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.406453 B = 6343.359421 C = 6637.052388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.250 3.750 3 H 0.108 0.892 4 C 0.203 3.797 5 N -0.501 5.501 6 C 0.192 3.808 7 C -0.005 4.005 8 C -0.079 4.079 9 C -0.125 4.125 10 C -0.111 4.111 11 C -0.124 4.124 12 C -0.089 4.089 13 N -0.392 5.392 14 O 0.087 5.913 15 N -0.575 5.575 16 C 0.153 3.847 17 C -0.272 4.272 18 H 0.077 0.923 19 C 0.012 3.988 20 N -0.896 5.896 21 Si 0.912 3.088 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.008 0.992 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 2.440 -14.211 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.137 3.863 3 H 0.126 0.874 4 C -0.020 4.020 5 N -0.235 5.235 6 C -0.078 4.078 7 C -0.007 4.007 8 C -0.099 4.099 9 C -0.143 4.143 10 C -0.130 4.130 11 C -0.142 4.142 12 C -0.109 4.109 13 N -0.101 5.101 14 O 0.029 5.971 15 N -0.295 5.295 16 C 0.009 3.991 17 C -0.402 4.402 18 H 0.095 0.905 19 C -0.189 4.189 20 N -0.538 5.538 21 Si 0.741 3.259 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.201 1.201 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.391 1.821 -14.620 14.925 hybrid contribution 0.724 0.241 0.887 1.170 sum -1.668 2.062 -13.733 13.986 Atomic orbital electron populations 1.22267 0.95204 1.02463 1.01907 1.19536 0.93485 0.95213 0.78077 0.87377 1.31329 0.93180 0.80531 0.96923 1.71948 1.19048 1.30208 1.02311 1.23833 1.01756 0.84947 0.97237 1.17429 1.00208 0.94457 0.88612 1.21267 0.96343 0.96904 0.95364 1.21099 0.99843 0.98869 0.94449 1.21264 0.99304 0.92604 0.99821 1.21050 0.99791 0.97851 0.95523 1.21217 0.97461 0.98067 0.94135 1.74766 1.16590 1.23606 0.95131 1.85301 1.57838 1.27753 1.26235 1.44296 1.57198 1.10726 1.17323 1.20972 0.94910 0.83499 0.99698 1.19323 1.17314 0.91747 1.11768 0.90505 1.25192 0.96998 0.96212 1.00466 1.70082 1.37902 1.07658 1.38175 0.86142 0.78665 0.78939 0.82116 1.21055 1.21574 1.20145 0.92842 0.92267 0.90639 0.84644 0.85454 0.85826 0.85539 0.85254 0.94479 0.92972 0.97304 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.16 37.16 0.34 -2.21 16 2 C 0.25 5.01 3.26 -69.09 -0.23 4.79 16 3 H 0.11 2.12 7.87 -51.93 -0.41 1.71 16 4 C 0.20 4.27 7.19 -12.99 -0.09 4.18 16 5 N -0.50 -10.34 11.26 -9.88 -0.11 -10.45 16 6 C 0.19 3.83 7.80 -156.12 -1.22 2.61 16 7 C -0.01 -0.09 5.88 -104.89 -0.62 -0.70 16 8 C -0.08 -1.12 9.70 -39.25 -0.38 -1.50 16 9 C -0.12 -1.39 10.03 -39.63 -0.40 -1.79 16 10 C -0.11 -1.14 10.04 -39.52 -0.40 -1.54 16 11 C -0.12 -1.40 10.03 -39.63 -0.40 -1.79 16 12 C -0.09 -1.27 9.69 -39.26 -0.38 -1.65 16 13 N -0.39 -8.27 11.86 30.97 0.37 -7.90 16 14 O 0.09 1.89 9.95 18.03 0.18 2.07 16 15 N -0.58 -13.77 2.80 -174.81 -0.49 -14.26 16 16 C 0.15 3.64 7.46 59.85 0.45 4.09 16 17 C -0.27 -7.11 9.58 -15.06 -0.14 -7.25 16 18 H 0.08 1.92 7.82 -52.49 -0.41 1.51 16 19 C 0.01 0.32 5.13 -17.43 -0.09 0.23 16 20 N -0.90 -25.42 10.66 55.49 0.59 -24.82 16 21 Si 0.91 21.05 29.57 -169.99 -5.03 16.02 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.95 6.66 -51.93 -0.35 0.61 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.14 1.92 7.88 -52.49 -0.41 1.51 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.13 1.84 7.87 -52.48 -0.41 1.43 16 33 H 0.04 0.98 7.18 -51.93 -0.37 0.61 16 34 H 0.05 1.31 7.29 -51.93 -0.38 0.93 16 35 H 0.01 0.18 6.43 -51.93 -0.33 -0.16 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -30.11 310.15 -7.69 -37.81 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.33 Total: -0.59 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.55 Total: -2.55 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.36 Total: -57.44 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.18 Total: 2.07 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.11 -7.69 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114716959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.542 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds