Wall clock time and date at job start Mon Mar 30 2020 01:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46879 * 2 1 4 4 C 1.50694 * 109.47348 * 239.99662 * 2 1 3 5 5 N 1.30980 * 126.43882 * 105.34344 * 4 2 1 6 6 C 1.35213 * 105.57933 * 180.14192 * 5 4 2 7 7 C 1.48424 * 126.41819 * 179.84756 * 6 5 4 8 8 C 1.39333 * 120.11488 * 359.69165 * 7 6 5 9 9 C 1.38025 * 119.87846 * 180.02562 * 8 7 6 10 10 C 1.38314 * 120.11908 * 359.97438 * 9 8 7 11 11 C 1.38322 * 120.24266 * 0.02562 * 10 9 8 12 12 C 1.38017 * 120.12184 * 359.97438 * 11 10 9 13 13 N 1.30758 * 107.17551 * 359.58357 * 6 5 4 14 14 O 1.21294 * 110.09655 * 0.26140 * 13 6 5 15 15 N 1.46496 * 109.47142 * 119.99119 * 2 1 3 16 16 C 1.46505 * 119.99653 * 60.00728 * 15 2 1 17 17 C 1.36937 * 120.00426 * 240.00057 * 15 2 1 18 18 H 1.08002 * 119.99938 * 23.58193 * 17 15 2 19 19 C 1.38814 * 120.00133 * 203.57896 * 17 15 2 20 20 N 1.31610 * 120.00252 * 11.38677 * 19 17 15 21 21 Si 1.86805 * 119.99890 * 191.38612 * 19 17 15 22 22 H 1.48500 * 109.46994 * 89.99876 * 21 19 17 23 23 H 1.48496 * 109.46775 * 210.00030 * 21 19 17 24 24 H 1.48498 * 109.46808 * 330.00065 * 21 19 17 25 25 H 1.08993 * 109.46953 * 60.00810 * 1 2 3 26 26 H 1.09002 * 109.46452 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47447 * 300.00003 * 1 2 3 28 28 H 1.08001 * 120.05895 * 0.04587 * 8 7 6 29 29 H 1.07996 * 119.93952 * 180.27188 * 9 8 7 30 30 H 1.07995 * 119.88153 * 179.97438 * 10 9 8 31 31 H 1.08005 * 119.94118 * 179.97438 * 11 10 9 32 32 H 1.08005 * 120.06632 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47433 * 94.44083 * 16 15 2 34 34 H 1.09003 * 109.46810 * 214.43747 * 16 15 2 35 35 H 1.08993 * 109.47288 * 334.43144 * 16 15 2 36 36 H 0.97002 * 120.00897 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.5546 -0.1507 -2.2932 6 6 2.8528 -1.1695 -3.1307 7 6 3.4652 -1.0524 -4.4777 8 6 3.7842 0.2018 -4.9939 9 6 4.3530 0.3050 -6.2473 10 6 4.6068 -0.8337 -6.9902 11 6 4.2921 -2.0813 -6.4825 12 6 3.7230 -2.1961 -5.2304 13 7 2.5059 -2.2777 -2.5296 14 8 2.0343 -2.0307 -1.4397 15 7 2.0184 -0.6904 1.1962 16 6 1.6645 -2.0930 1.4281 17 6 2.8056 -0.0249 2.0976 18 1 2.7652 1.0527 2.1576 19 6 3.6556 -0.7352 2.9342 20 7 3.8755 -2.0144 2.7166 21 14 4.4874 0.1247 4.3689 22 1 3.6240 0.0261 5.5730 23 1 5.7953 -0.5229 4.6431 24 1 4.7041 1.5544 4.0308 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.5871 1.0915 -4.4143 29 1 4.6048 1.2763 -6.6466 30 1 5.0516 -0.7485 -7.9706 31 1 4.4920 -2.9673 -7.0670 32 1 3.4772 -3.1707 -4.8350 33 1 2.4551 -2.7360 1.0412 34 1 1.5466 -2.2659 2.4979 35 1 0.7286 -2.3208 0.9181 36 1 4.4692 -2.5109 3.3013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114716959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:29 Heat of formation + Delta-G solvation = 98.316018 kcal Electronic energy + Delta-G solvation = -20424.190654 eV Core-core repulsion = 17297.751323 eV Total energy + Delta-G solvation = -3126.439331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.44010 -40.11544 -38.36752 -36.75284 -34.77905 -33.15346 -31.98162 -31.47464 -30.72864 -28.13431 -26.07147 -25.68491 -24.70090 -23.20562 -22.99463 -21.23023 -19.11221 -18.96678 -18.54783 -17.55232 -17.05811 -16.52951 -16.35067 -15.70690 -15.53606 -14.95737 -14.70909 -14.40947 -14.34810 -14.16667 -13.68882 -13.52657 -13.19451 -12.80068 -12.71758 -12.64233 -12.46131 -12.38411 -12.34959 -12.24052 -11.97248 -11.91631 -11.82944 -11.20356 -10.72142 -9.98635 -9.69646 -9.03024 -7.91421 -5.46297 -0.31955 0.37407 0.41469 1.45151 1.48617 1.50217 1.58311 1.95566 2.41112 2.54282 2.82647 2.97466 3.28601 3.52256 3.85459 4.00493 4.03492 4.20704 4.30399 4.33677 4.45296 4.54713 4.64161 4.74855 4.80516 4.91727 5.00287 5.05001 5.05532 5.22540 5.39094 5.43267 5.46907 5.48750 5.60554 5.68637 5.93517 6.21100 7.01723 7.15086 7.67345 8.11734 9.10620 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024918 B = 0.004413 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.406453 B = 6343.359421 C = 6637.052388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.248 3.752 3 H 0.113 0.887 4 C 0.197 3.803 5 N -0.508 5.508 6 C 0.198 3.802 7 C -0.048 4.048 8 C -0.090 4.090 9 C -0.119 4.119 10 C -0.094 4.094 11 C -0.120 4.120 12 C -0.102 4.102 13 N -0.412 5.412 14 O 0.065 5.935 15 N -0.592 5.592 16 C 0.173 3.827 17 C -0.278 4.278 18 H 0.087 0.913 19 C -0.044 4.044 20 N -0.934 5.934 21 Si 0.976 3.024 22 H -0.279 1.279 23 H -0.300 1.300 24 H -0.264 1.264 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.119 0.881 33 H 0.001 0.999 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 4.050 -16.690 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.137 3.863 3 H 0.131 0.869 4 C -0.025 4.025 5 N -0.242 5.242 6 C -0.072 4.072 7 C -0.050 4.050 8 C -0.110 4.110 9 C -0.136 4.136 10 C -0.112 4.112 11 C -0.137 4.137 12 C -0.122 4.122 13 N -0.125 5.125 14 O 0.012 5.988 15 N -0.312 5.312 16 C 0.028 3.972 17 C -0.407 4.407 18 H 0.105 0.895 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.803 3.197 22 H -0.205 1.205 23 H -0.226 1.226 24 H -0.188 1.188 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.145 0.855 29 H 0.178 0.822 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.137 0.863 33 H 0.019 0.981 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.211 3.459 -17.095 17.581 hybrid contribution 0.671 -0.209 1.390 1.557 sum -1.539 3.250 -15.705 16.112 Atomic orbital electron populations 1.22159 0.91692 1.02967 1.03710 1.19798 0.95682 0.94549 0.76319 0.86943 1.31383 0.93005 0.80576 0.97575 1.71949 1.19138 1.30582 1.02547 1.24552 1.00256 0.84189 0.98240 1.17672 1.03112 0.96388 0.87808 1.21358 0.97167 0.95646 0.96835 1.21500 0.98197 1.01000 0.92953 1.21795 0.96960 0.91480 1.00998 1.21442 0.98220 0.99865 0.94202 1.21304 0.98428 0.96975 0.95510 1.74748 1.18143 1.24316 0.95298 1.85264 1.58632 1.28064 1.26847 1.44404 1.57379 1.10612 1.18855 1.20635 0.94882 0.83367 0.98285 1.19733 1.16637 0.92374 1.12003 0.89499 1.25980 0.98137 0.96817 1.03128 1.70266 1.39163 1.09156 1.39269 0.85141 0.77022 0.78296 0.79212 1.20532 1.22645 1.18816 0.90393 0.92396 0.89417 0.85453 0.82162 0.81591 0.82418 0.86339 0.98092 0.95120 0.94439 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.16 71.98 0.66 -3.81 16 2 C 0.25 9.89 3.26 44.25 0.14 10.03 16 3 H 0.11 4.34 7.87 -2.38 -0.02 4.32 16 4 C 0.20 8.44 7.19 88.35 0.64 9.07 16 5 N -0.51 -21.27 11.26 -302.51 -3.41 -24.68 16 6 C 0.20 8.06 7.80 137.30 1.07 9.13 16 7 C -0.05 -1.58 5.88 -20.04 -0.12 -1.70 16 8 C -0.09 -2.45 9.70 22.48 0.22 -2.24 16 9 C -0.12 -2.23 10.03 22.24 0.22 -2.01 16 10 C -0.09 -1.49 10.04 22.31 0.22 -1.27 16 11 C -0.12 -2.31 10.03 22.24 0.22 -2.08 16 12 C -0.10 -2.85 9.69 22.48 0.22 -2.63 16 13 N -0.41 -18.06 11.86 -59.13 -0.70 -18.76 16 14 O 0.07 2.95 9.95 74.59 0.74 3.69 16 15 N -0.59 -28.69 2.80 -706.98 -1.98 -30.67 16 16 C 0.17 8.48 7.46 127.77 0.95 9.44 16 17 C -0.28 -14.62 9.58 84.03 0.81 -13.81 16 18 H 0.09 4.29 7.82 -2.91 -0.02 4.27 16 19 C -0.04 -2.42 5.13 84.86 0.44 -1.98 16 20 N -0.93 -55.00 10.66 21.65 0.23 -54.76 16 21 Si 0.98 43.84 29.57 68.60 2.03 45.87 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.79 6.66 -2.39 -0.02 1.77 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 28 H 0.13 3.57 7.88 -2.91 -0.02 3.54 16 29 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.12 3.46 7.87 -2.91 -0.02 3.43 16 33 H 0.00 0.04 7.18 -2.39 -0.02 0.02 16 34 H 0.03 1.59 7.29 -2.39 -0.02 1.57 16 35 H 0.04 1.57 6.43 -2.39 -0.02 1.56 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -68.12 310.15 3.69 -64.42 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.09 Total: 8.74 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.69 Total: 6.14 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -5.86 Total: -128.87 kcal Atomic # 8 Polarization: 2.95 SS G_CDS: 0.74 Total: 3.69 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.12 3.69 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114716959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.741 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds