Wall clock time and date at job start Mon Mar 30 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47523 * 2 1 4 4 C 1.50700 * 109.47016 * 239.99250 * 2 1 3 5 5 O 1.21288 * 120.00307 * 240.00405 * 4 2 1 6 6 N 1.34782 * 119.99775 * 60.00583 * 4 2 1 7 7 C 1.39955 * 119.99810 * 184.32056 * 6 4 2 8 8 C 1.39000 * 119.99116 * 144.79803 * 7 6 4 9 9 C 1.38215 * 120.23191 * 180.02562 * 8 7 6 10 10 C 1.38012 * 120.23062 * 359.67054 * 9 8 7 11 11 C 1.39636 * 119.98590 * 0.60770 * 10 9 8 12 12 C 1.43194 * 120.11674 * 179.69083 * 11 10 9 13 13 N 7.44034 * 126.39034 * 233.37365 * 2 1 3 14 14 C 1.38577 * 119.99704 * 324.82282 * 7 6 4 15 15 N 1.46500 * 109.46774 * 119.99951 * 2 1 3 16 16 C 1.46501 * 120.00376 * 59.99873 * 15 2 1 17 17 C 1.36935 * 119.99987 * 239.99690 * 15 2 1 18 18 H 1.07998 * 120.00028 * 24.89623 * 17 15 2 19 19 C 1.38816 * 120.00490 * 204.89132 * 17 15 2 20 20 N 1.31620 * 119.99504 * 5.61662 * 19 17 15 21 21 Si 1.86796 * 120.00380 * 185.61176 * 19 17 15 22 22 H 1.48499 * 109.46916 * 60.00088 * 21 19 17 23 23 H 1.48503 * 109.47078 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46994 * 300.00368 * 21 19 17 25 25 H 1.08998 * 109.46677 * 300.00532 * 1 2 3 26 26 H 1.09000 * 109.46505 * 60.00514 * 1 2 3 27 27 H 1.09003 * 109.47148 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99899 * 4.32748 * 6 4 2 29 29 H 1.08000 * 119.88045 * 0.02562 * 8 7 6 30 30 H 1.08004 * 119.88337 * 179.97438 * 9 8 7 31 31 H 1.07999 * 120.00805 * 180.30421 * 10 9 8 32 32 H 1.07998 * 120.11641 * 359.97438 * 14 7 6 33 33 H 1.09000 * 109.47224 * 95.10110 * 16 15 2 34 34 H 1.08999 * 109.47438 * 215.10196 * 16 15 2 35 35 H 1.09005 * 109.46888 * 335.10157 * 16 15 2 36 36 H 0.96999 * 119.99612 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 8 2.7296 -1.6967 -1.1190 6 7 1.7068 -0.2501 -2.4546 7 6 2.0969 -0.9602 -3.5958 8 6 1.2655 -0.9973 -4.7090 9 6 1.6455 -1.6974 -5.8385 10 6 2.8563 -2.3590 -5.8713 11 6 3.6963 -2.3328 -4.7561 12 6 4.9502 -3.0238 -4.7847 13 7 5.9443 -3.5733 -4.8068 14 6 3.3118 -1.6266 -3.6155 15 7 2.0183 -0.6906 1.1962 16 6 1.6644 -2.0932 1.4281 17 6 2.8056 -0.0252 2.0976 18 1 2.7497 1.0508 2.1724 19 6 3.6755 -0.7334 2.9152 20 7 3.8254 -2.0305 2.7494 21 14 4.6335 0.1542 4.2508 22 1 3.6853 0.7896 5.2008 23 1 5.4854 -0.8197 4.9794 24 1 5.4906 1.1984 3.6342 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.2023 0.5734 -2.5446 29 1 0.3191 -0.4771 -4.6914 30 1 0.9949 -1.7228 -6.7002 31 1 3.1519 -2.9009 -6.7575 32 1 3.9591 -1.5989 -2.7515 33 1 2.4602 -2.7358 1.0517 34 1 1.5349 -2.2633 2.4969 35 1 0.7345 -2.3240 0.9082 36 1 4.4329 -2.5255 3.3210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120774754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:34 Heat of formation + Delta-G solvation = 54.553395 kcal Electronic energy + Delta-G solvation = -20387.010464 eV Core-core repulsion = 17258.673443 eV Total energy + Delta-G solvation = -3128.337021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33733 -38.59794 -36.44661 -35.52532 -34.35896 -32.23385 -31.32024 -29.96066 -28.69853 -26.00536 -24.39503 -24.01349 -23.02672 -21.39151 -19.41702 -19.04731 -17.02412 -16.46443 -16.28867 -15.93348 -15.27631 -14.93953 -14.57792 -13.93181 -13.91055 -13.63294 -13.36359 -13.10232 -12.87210 -12.74727 -12.46865 -12.21520 -11.94159 -11.77447 -11.53585 -11.43176 -10.86559 -10.80839 -10.65931 -10.40312 -10.16899 -10.01009 -9.90449 -9.19613 -8.93945 -8.51804 -8.09018 -6.78116 -5.73422 -3.25348 0.73634 1.28620 2.70641 2.87552 3.25423 3.32918 3.40641 3.42859 3.43749 3.90732 3.93169 4.44635 4.79265 4.97631 5.03692 5.21952 5.31456 5.39008 5.45947 5.52471 5.76290 5.82648 5.90390 6.10020 6.14911 6.25869 6.29340 6.40211 6.47148 6.62484 6.88930 7.01079 7.46347 7.52537 7.68713 7.76935 8.01579 8.34758 8.72725 9.19597 9.79614 10.28747 11.28515 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004972 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.696635 B = 5630.706761 C = 6569.863855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.091 0.909 4 C 0.482 3.518 5 O -0.492 6.492 6 N -0.688 5.688 7 C 0.160 3.840 8 C -0.126 4.126 9 C -0.103 4.103 10 C -0.099 4.099 11 C -0.012 4.012 12 C 0.260 3.740 13 N -0.421 5.421 14 C -0.077 4.077 15 N -0.569 5.569 16 C 0.167 3.833 17 C -0.271 4.271 18 H 0.070 0.930 19 C 0.012 3.988 20 N -0.893 5.893 21 Si 0.907 3.093 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.282 1.282 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.407 0.593 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.044 0.956 34 H 0.042 0.958 35 H -0.007 1.007 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 5.029 -15.534 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.109 0.891 4 C 0.268 3.732 5 O -0.362 6.362 6 N -0.336 5.336 7 C 0.064 3.936 8 C -0.148 4.148 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.016 4.016 12 C -0.056 4.056 13 N -0.096 5.096 14 C -0.100 4.100 15 N -0.288 5.288 16 C 0.023 3.977 17 C -0.400 4.400 18 H 0.088 0.912 19 C -0.188 4.188 20 N -0.535 5.535 21 Si 0.736 3.264 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.208 1.208 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.243 0.757 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.011 0.989 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.172 3.284 -15.174 17.102 hybrid contribution 0.025 0.933 0.607 1.113 sum -7.147 4.217 -14.567 16.765 Atomic orbital electron populations 1.22225 0.96085 1.02043 1.01221 1.20578 0.93804 0.96788 0.84474 0.89134 1.23755 0.79747 0.85510 0.84151 1.90698 1.34466 1.25435 1.85584 1.44428 1.57750 1.27012 1.04448 1.17756 0.92280 0.95807 0.87741 1.21167 0.99017 1.01215 0.93392 1.20802 0.96082 0.97257 0.98038 1.21039 0.94138 0.99891 0.96964 1.15861 0.89280 1.00518 0.95948 1.25686 0.92913 0.93446 0.93516 1.81222 1.11239 1.09441 1.07726 1.21455 0.95420 0.95841 0.97272 1.43838 1.57619 1.10315 1.17033 1.20848 0.94370 0.84098 0.98348 1.19157 1.16371 0.91533 1.12954 0.91193 1.25223 0.97285 0.95966 1.00344 1.70093 1.37956 1.06150 1.39339 0.86317 0.79864 0.78666 0.81512 1.20839 1.21524 1.20833 0.91463 0.93346 0.92606 0.75716 0.85137 0.84927 0.85307 0.83183 0.93775 0.93907 0.98853 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.08 37.16 0.34 -1.96 16 2 C 0.16 2.96 3.12 -69.08 -0.22 2.74 16 3 H 0.09 1.58 7.88 -51.93 -0.41 1.17 16 4 C 0.48 8.91 6.89 -10.98 -0.08 8.84 16 5 O -0.49 -11.47 12.30 5.55 0.07 -11.40 16 6 N -0.69 -9.08 5.20 -9.89 -0.05 -9.13 16 7 C 0.16 2.07 6.29 -83.74 -0.53 1.55 16 8 C -0.13 -1.18 9.96 -39.31 -0.39 -1.57 16 9 C -0.10 -0.85 10.02 -39.67 -0.40 -1.25 16 10 C -0.10 -0.97 9.75 -39.14 -0.38 -1.35 16 11 C -0.01 -0.16 5.73 -106.96 -0.61 -0.77 16 12 C 0.26 3.95 15.33 -22.47 -0.34 3.60 16 13 N -0.42 -7.26 18.54 41.84 0.78 -6.48 16 14 C -0.08 -1.16 8.40 -38.97 -0.33 -1.49 16 15 N -0.57 -14.00 2.59 -174.81 -0.45 -14.45 16 16 C 0.17 4.27 7.59 59.85 0.45 4.72 16 17 C -0.27 -7.28 9.59 -15.06 -0.14 -7.42 16 18 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 19 C 0.01 0.34 5.24 -17.43 -0.09 0.25 16 20 N -0.89 -26.54 10.45 55.49 0.58 -25.96 16 21 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 27 H 0.05 0.88 6.67 -51.93 -0.35 0.54 16 28 H 0.41 3.79 8.38 -40.82 -0.34 3.45 16 29 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.15 2.79 6.24 -52.49 -0.33 2.46 16 33 H 0.04 1.28 6.66 -51.93 -0.35 0.93 16 34 H 0.04 1.16 7.26 -51.93 -0.38 0.78 16 35 H -0.01 -0.16 6.44 -51.93 -0.33 -0.49 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -33.81 312.56 -6.23 -40.04 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.12 Total: 0.14 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -2.72 Total: 5.88 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.85 Total: -56.02 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.81 -6.23 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120774754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.594 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds