Wall clock time and date at job start Mon Mar 30 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47523 * 2 1 4 4 C 1.50700 * 109.47016 * 239.99250 * 2 1 3 5 5 O 1.21288 * 120.00307 * 240.00405 * 4 2 1 6 6 N 1.34782 * 119.99775 * 60.00583 * 4 2 1 7 7 C 1.39955 * 119.99810 * 184.32056 * 6 4 2 8 8 C 1.39000 * 119.99116 * 144.79803 * 7 6 4 9 9 C 1.38215 * 120.23191 * 180.02562 * 8 7 6 10 10 C 1.38012 * 120.23062 * 359.67054 * 9 8 7 11 11 C 1.39636 * 119.98590 * 0.60770 * 10 9 8 12 12 C 1.43194 * 120.11674 * 179.69083 * 11 10 9 13 13 N 7.44034 * 126.39034 * 233.37365 * 2 1 3 14 14 C 1.38577 * 119.99704 * 324.82282 * 7 6 4 15 15 N 1.46500 * 109.46774 * 119.99951 * 2 1 3 16 16 C 1.46501 * 120.00376 * 59.99873 * 15 2 1 17 17 C 1.36935 * 119.99987 * 239.99690 * 15 2 1 18 18 H 1.07998 * 120.00028 * 24.89623 * 17 15 2 19 19 C 1.38816 * 120.00490 * 204.89132 * 17 15 2 20 20 N 1.31620 * 119.99504 * 5.61662 * 19 17 15 21 21 Si 1.86796 * 120.00380 * 185.61176 * 19 17 15 22 22 H 1.48499 * 109.46916 * 60.00088 * 21 19 17 23 23 H 1.48503 * 109.47078 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46994 * 300.00368 * 21 19 17 25 25 H 1.08998 * 109.46677 * 300.00532 * 1 2 3 26 26 H 1.09000 * 109.46505 * 60.00514 * 1 2 3 27 27 H 1.09003 * 109.47148 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99899 * 4.32748 * 6 4 2 29 29 H 1.08000 * 119.88045 * 0.02562 * 8 7 6 30 30 H 1.08004 * 119.88337 * 179.97438 * 9 8 7 31 31 H 1.07999 * 120.00805 * 180.30421 * 10 9 8 32 32 H 1.07998 * 120.11641 * 359.97438 * 14 7 6 33 33 H 1.09000 * 109.47224 * 95.10110 * 16 15 2 34 34 H 1.08999 * 109.47438 * 215.10196 * 16 15 2 35 35 H 1.09005 * 109.46888 * 335.10157 * 16 15 2 36 36 H 0.96999 * 119.99612 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 8 2.7296 -1.6967 -1.1190 6 7 1.7068 -0.2501 -2.4546 7 6 2.0969 -0.9602 -3.5958 8 6 1.2655 -0.9973 -4.7090 9 6 1.6455 -1.6974 -5.8385 10 6 2.8563 -2.3590 -5.8713 11 6 3.6963 -2.3328 -4.7561 12 6 4.9502 -3.0238 -4.7847 13 7 5.9443 -3.5733 -4.8068 14 6 3.3118 -1.6266 -3.6155 15 7 2.0183 -0.6906 1.1962 16 6 1.6644 -2.0932 1.4281 17 6 2.8056 -0.0252 2.0976 18 1 2.7497 1.0508 2.1724 19 6 3.6755 -0.7334 2.9152 20 7 3.8254 -2.0305 2.7494 21 14 4.6335 0.1542 4.2508 22 1 3.6853 0.7896 5.2008 23 1 5.4854 -0.8197 4.9794 24 1 5.4906 1.1984 3.6342 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.2023 0.5734 -2.5446 29 1 0.3191 -0.4771 -4.6914 30 1 0.9949 -1.7228 -6.7002 31 1 3.1519 -2.9009 -6.7575 32 1 3.9591 -1.5989 -2.7515 33 1 2.4602 -2.7358 1.0517 34 1 1.5349 -2.2633 2.4969 35 1 0.7345 -2.3240 0.9082 36 1 4.4329 -2.5255 3.3210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120774754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:34 Heat of formation + Delta-G solvation = 31.393089 kcal Electronic energy + Delta-G solvation = -20388.014770 eV Core-core repulsion = 17258.673443 eV Total energy + Delta-G solvation = -3129.341327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53399 -39.79819 -37.74292 -37.20144 -35.64369 -34.02052 -32.24012 -31.43726 -30.00687 -28.04243 -25.87460 -24.99627 -24.43659 -22.74830 -20.80485 -20.17404 -18.90503 -17.78344 -17.38117 -17.14588 -16.70486 -16.37768 -15.92149 -15.55511 -15.12162 -14.91389 -14.68986 -14.62983 -14.21992 -14.04572 -13.91351 -13.49309 -13.33339 -13.05398 -12.69232 -12.63082 -12.57150 -12.48566 -12.40372 -12.32327 -11.92727 -11.79303 -11.28918 -10.77584 -10.46495 -9.89751 -9.11709 -8.77520 -7.81648 -5.35557 -0.20265 0.36350 1.45113 1.47913 1.50823 1.54700 1.71875 1.97982 2.20153 2.50247 2.85349 2.93697 3.34507 3.61819 3.96779 4.04311 4.18758 4.25501 4.39784 4.44978 4.53505 4.61926 4.77803 4.91931 5.01806 5.10347 5.29043 5.30831 5.36319 5.42388 5.50111 5.55923 5.63691 5.87164 6.01472 6.28716 6.34905 6.62576 7.12498 7.40175 7.84676 8.28517 9.20025 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004972 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.696635 B = 5630.706761 C = 6569.863855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.148 3.852 3 H 0.106 0.894 4 C 0.485 3.515 5 O -0.551 6.551 6 N -0.664 5.664 7 C 0.136 3.864 8 C -0.098 4.098 9 C -0.088 4.088 10 C -0.079 4.079 11 C -0.034 4.034 12 C 0.275 3.725 13 N -0.471 5.471 14 C -0.104 4.104 15 N -0.590 5.590 16 C 0.193 3.807 17 C -0.270 4.270 18 H 0.086 0.914 19 C -0.054 4.054 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.268 1.268 23 H -0.301 1.301 24 H -0.275 1.275 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.042 0.958 28 H 0.429 0.571 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.157 0.843 32 H 0.100 0.900 33 H -0.002 1.002 34 H 0.014 0.986 35 H 0.019 0.981 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.638 7.493 -18.640 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 H 0.123 0.877 4 C 0.272 3.728 5 O -0.426 6.426 6 N -0.313 5.313 7 C 0.041 3.959 8 C -0.119 4.119 9 C -0.106 4.106 10 C -0.101 4.101 11 C -0.038 4.038 12 C -0.039 4.039 13 N -0.147 5.147 14 C -0.128 4.128 15 N -0.311 5.311 16 C 0.048 3.952 17 C -0.400 4.400 18 H 0.103 0.897 19 C -0.250 4.250 20 N -0.583 5.583 21 Si 0.800 3.200 22 H -0.193 1.193 23 H -0.228 1.228 24 H -0.201 1.201 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.061 0.939 28 H 0.270 0.730 29 H 0.191 0.809 30 H 0.200 0.800 31 H 0.175 0.825 32 H 0.118 0.882 33 H 0.016 0.984 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.520 5.837 -18.361 21.952 hybrid contribution 0.910 0.248 1.333 1.633 sum -9.610 6.085 -17.028 20.478 Atomic orbital electron populations 1.22105 0.92192 1.02023 1.03842 1.20886 0.96273 0.96520 0.82692 0.87654 1.23227 0.79057 0.84714 0.85827 1.90720 1.37057 1.28134 1.86641 1.43787 1.56891 1.27523 1.03116 1.17886 0.92476 0.96845 0.88737 1.21618 0.99262 0.99566 0.91476 1.21386 0.95404 0.94845 0.98923 1.21466 0.93756 0.98701 0.96129 1.15973 0.89268 1.01539 0.97022 1.26198 0.93047 0.92506 0.92134 1.81211 1.12709 1.11417 1.09355 1.21153 0.96541 0.98467 0.96608 1.43960 1.57840 1.09767 1.19554 1.20360 0.93826 0.84678 0.96373 1.19657 1.15173 0.92282 1.12927 0.89660 1.26063 0.99026 0.96616 1.03252 1.70329 1.39338 1.07877 1.40719 0.85266 0.78487 0.77241 0.78967 1.19318 1.22796 1.20089 0.91468 0.88106 0.93860 0.73047 0.80921 0.80001 0.82513 0.88185 0.98370 0.96726 0.96223 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.08 71.98 0.65 -3.10 16 2 C 0.15 5.39 3.12 44.25 0.14 5.52 16 3 H 0.11 3.47 7.88 -2.39 -0.02 3.45 16 4 C 0.48 17.83 6.89 87.66 0.60 18.44 16 5 O -0.55 -27.13 12.30 -3.05 -0.04 -27.16 16 6 N -0.66 -15.94 5.20 -303.60 -1.58 -17.51 16 7 C 0.14 3.20 6.29 38.11 0.24 3.44 16 8 C -0.10 -1.28 9.96 22.45 0.22 -1.06 16 9 C -0.09 -0.89 10.02 22.21 0.22 -0.67 16 10 C -0.08 -1.24 9.75 22.55 0.22 -1.02 16 11 C -0.03 -0.88 5.73 -21.38 -0.12 -1.00 16 12 C 0.28 8.71 15.33 88.33 1.35 10.06 16 13 N -0.47 -17.11 18.54 19.00 0.35 -16.76 16 14 C -0.10 -3.23 8.40 22.67 0.19 -3.04 16 15 N -0.59 -29.65 2.59 -706.97 -1.83 -31.48 16 16 C 0.19 10.31 7.59 127.77 0.97 11.28 16 17 C -0.27 -14.77 9.59 84.03 0.81 -13.97 16 18 H 0.09 4.28 7.81 -2.91 -0.02 4.26 16 19 C -0.05 -3.13 5.24 84.86 0.44 -2.69 16 20 N -0.94 -59.15 10.45 21.65 0.23 -58.93 16 21 Si 0.97 45.95 29.56 68.60 2.03 47.97 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.10 1.58 7.67 -2.39 -0.02 1.56 16 27 H 0.04 1.26 6.67 -2.39 -0.02 1.24 16 28 H 0.43 6.10 8.38 -92.71 -0.78 5.32 16 29 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.10 4.12 6.24 -2.91 -0.02 4.10 16 33 H 0.00 -0.13 6.66 -2.39 -0.02 -0.15 16 34 H 0.01 0.81 7.26 -2.39 -0.02 0.80 16 35 H 0.02 0.91 6.44 -2.38 -0.02 0.89 16 36 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -83.68 312.56 5.45 -78.23 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 0.34 Total: 3.44 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 5.94 Total: 22.20 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -2.83 Total: -124.68 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.16 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -83.68 5.45 -78.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120774754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.622 kcal (2) G-P(sol) polarization free energy of solvation -83.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds