Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99813 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00047 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47231 * 89.99796 * 8 6 4 10 10 H 1.48499 * 109.47342 * 210.00322 * 8 6 4 11 11 H 1.48505 * 109.46935 * 330.00024 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.34227 * 126.56472 * 264.68152 * 15 14 12 17 17 N 1.36914 * 109.91438 * 179.89387 * 16 15 14 18 18 H 0.97002 * 124.99110 * 180.13401 * 17 16 15 19 19 C 1.37424 * 110.02158 * 0.38949 * 17 16 15 20 20 N 1.32655 * 133.19438 * 179.75104 * 19 17 16 21 21 C 1.31592 * 121.67139 * 180.02562 * 20 19 17 22 22 C 1.38664 * 121.58213 * 0.02562 * 21 20 19 23 23 C 1.38188 * 119.41276 * 359.96645 * 22 21 20 24 24 C 1.39699 * 118.04055 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 30 30 H 0.97004 * 119.99796 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 32 32 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 33 33 H 1.08004 * 125.04274 * 0.03583 * 16 15 14 34 34 H 1.08003 * 119.20817 * 179.97438 * 21 20 19 35 35 H 1.08007 * 120.28783 * 179.97438 * 22 21 20 36 36 H 1.08003 * 120.98299 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2573 -2.9128 8 14 3.7349 3.9282 -0.2531 9 1 5.1082 3.5060 0.1225 10 1 3.7506 5.3550 -0.6644 11 1 2.8291 3.7587 0.9115 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.8087 -4.2856 -1.0867 17 7 3.6906 -5.2591 -0.7005 18 1 4.1444 -5.8693 -1.3028 19 6 3.8343 -5.2485 0.6662 20 7 4.5522 -5.9788 1.5093 21 6 4.5173 -5.7689 2.8079 22 6 3.7272 -4.7729 3.3615 23 6 2.9568 -3.9790 2.5335 24 6 3.0093 -4.2193 1.1583 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5137 29 1 3.1499 1.1385 0.5139 30 1 3.8224 4.0832 -3.0901 31 1 0.7588 -2.5340 0.8844 32 1 0.7590 -2.5261 -0.8955 33 1 2.5156 -4.0834 -2.1063 34 1 5.1179 -6.3877 3.4582 35 1 3.7141 -4.6191 4.4305 36 1 2.3324 -3.1957 2.9375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156912480.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = 42.331003 kcal Electronic energy + Delta-G solvation = -20305.141047 eV Core-core repulsion = 17176.274024 eV Total energy + Delta-G solvation = -3128.867023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47249 -38.93180 -37.69860 -34.86606 -33.37435 -32.52387 -31.29539 -29.59818 -28.69868 -26.93305 -25.67013 -23.62613 -22.51917 -22.38149 -19.70723 -18.44905 -17.91618 -16.95953 -16.70940 -16.30569 -15.98889 -15.25460 -14.83609 -14.76382 -14.57665 -13.95641 -13.25664 -13.03887 -12.84576 -12.64467 -12.60106 -12.28685 -12.16099 -12.05246 -11.97573 -11.43060 -11.36994 -10.86507 -10.50497 -10.25537 -10.12723 -9.52915 -9.35308 -8.97734 -8.57807 -8.37466 -7.84809 -7.65178 -6.08026 -4.06300 1.07737 1.44395 2.67957 2.85767 3.30087 3.36080 3.38200 3.43038 3.91198 4.05487 4.40742 4.54551 4.74708 4.79512 5.00244 5.17237 5.20775 5.30670 5.35890 5.46800 5.59070 5.60371 5.72548 5.81727 5.87630 6.04743 6.18254 6.32876 6.45966 6.60620 6.73210 6.97625 7.02769 7.34814 7.38263 7.63007 8.06308 8.30439 8.48676 8.94527 9.06386 9.52931 11.05447 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.004454 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.674936 B = 6284.587788 C = 6413.841029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.602 5.602 3 C 0.216 3.784 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.505 3.495 13 O -0.531 6.531 14 C -0.066 4.066 15 C -0.135 4.135 16 C 0.072 3.928 17 N -0.581 5.581 18 H 0.418 0.582 19 C 0.285 3.715 20 N -0.503 5.503 21 C 0.131 3.869 22 C -0.207 4.207 23 C -0.024 4.024 24 C -0.131 4.131 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 -16.399 9.314 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.334 5.334 3 C 0.095 3.905 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.292 3.708 13 O -0.407 6.407 14 C -0.107 4.107 15 C -0.143 4.143 16 C -0.054 4.054 17 N -0.187 5.187 18 H 0.256 0.744 19 C 0.052 3.948 20 N -0.216 5.216 21 C -0.035 4.035 22 C -0.228 4.228 23 C -0.050 4.050 24 C -0.139 4.139 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.195 0.805 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.567 -16.942 8.690 19.580 hybrid contribution 0.062 1.160 0.533 1.279 sum -4.506 -15.781 9.223 18.826 Atomic orbital electron populations 1.21662 0.81048 1.02978 1.00392 1.47854 1.06181 1.07082 1.72331 1.19635 0.92445 0.80167 0.98254 1.21340 1.36825 1.07066 0.91333 0.90806 1.24861 0.95257 0.97382 0.95551 1.69900 1.41608 1.23586 1.18652 0.86848 0.80146 0.79712 0.82972 1.19955 1.21084 1.19054 1.20347 0.88210 0.84801 0.77484 1.90686 1.13902 1.87061 1.49082 1.20036 0.96466 0.90066 1.04130 1.19590 1.03965 0.99720 0.90976 1.21637 0.93497 0.90859 0.99381 1.41438 1.40476 1.32472 1.04312 0.74423 1.18346 0.96378 0.94934 0.85191 1.66434 1.22649 1.28656 1.03901 1.22351 0.96306 0.95767 0.89047 1.21788 1.01059 0.99169 1.00834 1.20938 0.96231 0.96762 0.91078 1.19683 1.01367 0.98854 0.93953 0.93736 0.90658 0.92080 0.95340 0.94675 0.92603 0.88843 0.88385 0.80486 0.82584 0.84803 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.25 59.85 0.61 1.83 16 2 N -0.60 -12.19 2.86 -182.95 -0.52 -12.71 16 3 C 0.22 5.30 4.23 -5.20 -0.02 5.28 16 4 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 5 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.51 10.14 7.67 -10.98 -0.08 10.06 16 13 O -0.53 -13.28 15.61 5.55 0.09 -13.19 16 14 C -0.07 -0.94 4.79 -29.03 -0.14 -1.08 16 15 C -0.13 -2.02 4.81 -102.76 -0.49 -2.52 16 16 C 0.07 0.94 11.74 -16.70 -0.20 0.75 16 17 N -0.58 -7.48 6.05 -12.14 -0.07 -7.55 16 18 H 0.42 4.09 8.96 -40.82 -0.37 3.73 16 19 C 0.28 4.37 8.43 -155.69 -1.31 3.06 16 20 N -0.50 -7.42 10.39 -12.27 -0.13 -7.55 16 21 C 0.13 1.58 11.15 -17.50 -0.20 1.39 16 22 C -0.21 -2.40 10.10 -39.44 -0.40 -2.80 16 23 C -0.02 -0.32 10.22 -39.05 -0.40 -0.72 16 24 C -0.13 -2.05 6.37 -105.11 -0.67 -2.72 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 27 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 28 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 29 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.10 1.14 7.40 -51.93 -0.38 0.76 16 33 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -37.64 311.93 -7.92 -45.57 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.35 Total: 1.69 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -3.74 Total: -1.00 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.05 Total: -54.85 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.64 -7.92 -45.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156912480.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.897 kcal (2) G-P(sol) polarization free energy of solvation -37.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds