Wall clock time and date at job start Mon Mar 30 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47206 * 2 1 4 4 C 1.50698 * 109.47102 * 120.00415 * 2 1 3 5 5 H 1.08003 * 119.99804 * 119.99225 * 4 2 1 6 6 C 1.37878 * 120.00418 * 299.99971 * 4 2 1 7 7 N 1.31518 * 119.99549 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46905 * 59.99684 * 8 6 4 10 10 H 1.48494 * 109.47006 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46968 * 299.99608 * 8 6 4 12 12 N 1.46499 * 109.46658 * 240.00590 * 2 1 3 13 13 C 1.46507 * 120.00030 * 299.72186 * 12 2 1 14 14 C 1.34777 * 120.00298 * 120.00220 * 12 2 1 15 15 O 1.21718 * 119.99414 * 355.67628 * 14 12 2 16 16 C 1.46564 * 120.00383 * 175.66982 * 14 12 2 17 17 C 1.40556 * 126.57502 * 35.23070 * 16 14 12 18 18 N 1.30741 * 108.74044 * 180.02562 * 17 16 14 19 19 N 1.40008 * 109.60940 * 0.02562 * 18 17 16 20 20 C 1.36244 * 132.01717 * 180.02562 * 19 18 17 21 21 C 1.35195 * 120.70420 * 179.18110 * 20 19 18 22 22 C 1.40161 * 120.31709 * 0.67638 * 21 20 19 23 23 C 1.36450 * 119.41166 * 359.57592 * 22 21 20 24 24 C 1.36578 * 107.90483 * 359.73128 * 19 18 17 25 25 H 1.09002 * 109.46775 * 299.99706 * 1 2 3 26 26 H 1.08999 * 109.47495 * 59.99076 * 1 2 3 27 27 H 1.09000 * 109.47660 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00052 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.46704 * 95.40843 * 13 12 2 30 30 H 1.08996 * 109.46863 * 215.41302 * 13 12 2 31 31 H 1.09002 * 109.47177 * 335.40897 * 13 12 2 32 32 H 1.07997 * 125.63012 * 0.02562 * 17 16 14 33 33 H 1.07996 * 119.64202 * 359.97341 * 20 19 18 34 34 H 1.08001 * 119.83892 * 180.27347 * 21 20 19 35 35 H 1.08001 * 120.29282 * 179.59782 * 22 21 20 36 36 H 1.07996 * 120.37161 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3225 -1.1199 4.0079 9 1 3.8075 -1.1193 4.0075 10 1 1.8280 -0.4197 5.2204 11 1 1.8280 -2.5202 4.0080 12 7 2.0182 -0.6905 -1.1963 13 6 1.6692 -2.0949 -1.4252 14 6 2.7931 -0.0355 -2.0834 15 8 3.0224 1.1502 -1.9321 16 6 3.3596 -0.7510 -3.2303 17 6 2.7494 -1.7902 -3.9537 18 7 3.5620 -2.1745 -4.9031 19 7 4.7369 -1.4148 -4.8521 20 6 5.8673 -1.4313 -5.6126 21 6 6.8773 -0.5669 -5.3666 22 6 6.7812 0.3522 -4.3129 23 6 5.6552 0.3731 -3.5424 24 6 4.6179 -0.5261 -3.8218 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7096 1.1616 3.4845 29 1 0.7956 -2.1509 -2.0745 30 1 2.5078 -2.6049 -1.8992 31 1 1.4448 -2.5735 -0.4719 32 1 1.7709 -2.2031 -3.7577 33 1 5.9519 -2.1337 -6.4285 34 1 7.7653 -0.5892 -5.9811 35 1 7.5911 1.0382 -4.1127 36 1 5.5646 1.0751 -2.7268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227275651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:47 Heat of formation + Delta-G solvation = 57.262649 kcal Electronic energy + Delta-G solvation = -20721.965807 eV Core-core repulsion = 17593.746268 eV Total energy + Delta-G solvation = -3128.219539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.17353 -40.40912 -38.19721 -37.05991 -34.83059 -33.91898 -31.87967 -31.54223 -29.44421 -27.69161 -27.28240 -24.89697 -24.74935 -23.25591 -22.33256 -20.21914 -18.72050 -18.31088 -17.76490 -17.34928 -17.16157 -16.73566 -16.55266 -16.00725 -15.87800 -15.48503 -14.81682 -14.46004 -14.27782 -13.77261 -13.53650 -13.15330 -13.09014 -12.95078 -12.93612 -12.73360 -12.66287 -12.54999 -12.17527 -12.11246 -11.95831 -11.52842 -11.19218 -10.71414 -10.47729 -10.43703 -9.33293 -8.66343 -8.12735 -6.29558 -0.31914 0.00737 1.17113 1.18353 1.42181 1.44616 1.52311 2.10177 2.33280 2.47588 2.63562 3.14650 3.20334 3.56791 3.87112 3.89462 4.06913 4.13163 4.33032 4.45335 4.52233 4.68253 4.73444 4.80566 4.92977 5.01006 5.06051 5.09903 5.23286 5.26193 5.42207 5.49842 5.66040 5.69483 5.79964 6.07607 6.18353 6.38682 6.77604 6.87140 7.34083 7.52701 8.91595 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.004838 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.970106 B = 5785.965881 C = 6101.889260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.262 1.262 12 N -0.595 5.595 13 C 0.080 3.920 14 C 0.580 3.420 15 O -0.611 6.611 16 C -0.339 4.339 17 C 0.124 3.876 18 N -0.338 5.338 19 N -0.270 5.270 20 C 0.097 3.903 21 C -0.142 4.142 22 C -0.048 4.048 23 C -0.150 4.150 24 C 0.141 3.859 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.222 0.778 33 H 0.207 0.793 34 H 0.211 0.789 35 H 0.180 0.820 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.130 -7.469 -16.754 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.187 1.187 12 N -0.324 5.324 13 C -0.062 4.062 14 C 0.370 3.630 15 O -0.495 6.495 16 C -0.354 4.354 17 C -0.055 4.055 18 N -0.160 5.160 19 N -0.034 5.034 20 C -0.029 4.029 21 C -0.163 4.163 22 C -0.071 4.071 23 C -0.170 4.170 24 C 0.020 3.980 25 H 0.087 0.913 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.238 0.762 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.198 0.802 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.142 -7.685 -17.503 22.126 hybrid contribution -0.330 0.621 1.951 2.074 sum 10.811 -7.064 -15.552 20.215 Atomic orbital electron populations 1.21869 0.96988 1.00183 0.99908 1.18550 0.91763 0.92166 0.81328 0.97348 1.21525 1.32018 1.13092 0.91145 0.92339 1.25732 0.95025 0.95638 1.01931 1.70023 1.37218 1.23798 1.24501 0.85499 0.78331 0.79006 0.78103 1.20381 1.20709 1.18689 1.48009 1.49259 1.13014 1.22113 1.21997 1.00515 0.80905 1.02784 1.17483 0.78065 0.85619 0.81834 1.90671 1.63443 1.17475 1.77931 1.19706 0.98728 1.09942 1.07022 1.24532 0.99676 0.91554 0.89762 1.77444 0.92730 1.19947 1.25879 1.46303 1.13419 1.22985 1.20710 1.22529 0.82385 1.01676 0.96280 1.21571 1.00181 0.94784 0.99742 1.21826 0.96194 0.97088 0.91964 1.20824 0.93266 0.99503 1.03400 1.19464 0.95806 0.92813 0.89929 0.91270 0.96261 0.93306 0.92587 0.90819 0.90754 0.90849 0.76206 0.77611 0.77264 0.80236 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 8.97 71.98 0.65 -5.95 16 2 C 0.26 14.49 2.63 44.24 0.12 14.60 16 3 H 0.01 0.56 6.90 -2.39 -0.02 0.54 16 4 C -0.54 -30.38 7.95 25.60 0.20 -30.17 16 5 H 0.06 3.21 7.41 -2.91 -0.02 3.19 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 N -0.59 -27.67 2.75 -831.62 -2.29 -29.96 16 13 C 0.08 2.81 7.94 127.77 1.01 3.83 16 14 C 0.58 27.64 7.56 86.41 0.65 28.30 16 15 O -0.61 -34.28 16.04 -4.40 -0.07 -34.35 16 16 C -0.34 -13.00 5.46 -19.90 -0.11 -13.11 16 17 C 0.12 3.80 9.64 85.42 0.82 4.63 16 18 N -0.34 -9.94 12.57 -56.62 -0.71 -10.65 16 19 N -0.27 -7.34 3.86 -187.27 -0.72 -8.07 16 20 C 0.10 1.54 11.18 83.31 0.93 2.47 16 21 C -0.14 -1.55 9.98 22.04 0.22 -1.33 16 22 C -0.05 -0.79 10.09 22.32 0.23 -0.56 16 23 C -0.15 -4.34 9.94 22.30 0.22 -4.11 16 24 C 0.14 4.73 6.75 39.49 0.27 5.00 16 25 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 2.21 7.68 -2.39 -0.02 2.19 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.07 2.08 7.27 -2.39 -0.02 2.07 16 30 H 0.07 2.32 5.82 -2.39 -0.01 2.30 16 31 H 0.07 2.69 7.09 -2.39 -0.02 2.67 16 32 H 0.22 5.36 6.09 -2.91 -0.02 5.34 16 33 H 0.21 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.21 0.08 8.06 -2.91 -0.02 0.06 16 35 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.13 4.35 7.82 -2.91 -0.02 4.33 16 Total: -1.00 -80.72 303.57 5.24 -75.48 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.10 Total: 10.36 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.66 Total: 4.96 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -3.48 Total: -102.31 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.07 Total: -34.35 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -80.72 5.24 -75.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227275651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.747 kcal (2) G-P(sol) polarization free energy of solvation -80.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds