Wall clock time and date at job start Mon Mar 30 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36935 * 120.00260 * 2 1 4 4 H 1.08004 * 119.99979 * 200.27517 * 3 2 1 5 5 C 1.38809 * 119.99549 * 20.28038 * 3 2 1 6 6 N 1.31611 * 120.00508 * 15.01591 * 5 3 2 7 7 Si 1.86810 * 119.99669 * 195.01613 * 5 3 2 8 8 H 1.48501 * 109.46988 * 85.00150 * 7 5 3 9 9 H 1.48502 * 109.46978 * 205.00000 * 7 5 3 10 10 H 1.48494 * 109.46940 * 324.99968 * 7 5 3 11 11 C 1.46499 * 119.99736 * 180.02562 * 2 1 3 12 12 C 1.50694 * 109.47468 * 270.00036 * 11 2 1 13 13 O 1.21277 * 119.99675 * 359.97438 * 12 11 2 14 14 N 1.34778 * 120.00278 * 180.02562 * 12 11 2 15 15 C 1.46503 * 119.99862 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46594 * 179.97438 * 15 14 12 17 17 C 1.38366 * 119.84613 * 89.99977 * 16 15 14 18 18 C 1.37947 * 120.14983 * 179.97438 * 17 16 15 19 19 C 1.39632 * 119.84950 * 359.97438 * 18 17 16 20 20 C 1.43196 * 120.15349 * 180.02562 * 19 18 17 21 21 N 9.65402 * 145.25809 * 146.35539 * 11 1 2 22 22 C 1.39640 * 119.69452 * 0.27930 * 19 18 17 23 23 C 1.37948 * 119.84763 * 359.46398 * 22 19 18 24 24 H 1.09000 * 109.46949 * 275.09665 * 1 2 3 25 25 H 1.08999 * 109.47384 * 35.09481 * 1 2 3 26 26 H 1.08997 * 109.47837 * 155.09812 * 1 2 3 27 27 H 0.97008 * 120.00458 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47245 * 149.99339 * 11 2 1 29 29 H 1.09002 * 109.47044 * 30.00404 * 11 2 1 30 30 H 0.97002 * 119.99897 * 359.97438 * 14 12 11 31 31 H 1.08997 * 109.47319 * 59.99422 * 15 14 12 32 32 H 1.09000 * 109.46895 * 299.99439 * 15 14 12 33 33 H 1.07999 * 119.92487 * 0.02562 * 17 16 15 34 34 H 1.07999 * 120.07912 * 179.97438 * 18 17 16 35 35 H 1.07994 * 120.07424 * 179.69841 * 22 19 18 36 36 H 1.07998 * 119.92655 * 180.23143 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1795 1.2148 -0.3241 5 6 1.5201 2.3507 0.4167 6 7 0.3865 2.2843 1.0820 7 14 2.2820 4.0127 0.0331 8 1 1.8689 4.4447 -1.3263 9 1 1.8208 5.0108 1.0312 10 1 3.7619 3.9036 0.0895 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7045 1.4200 13 8 2.0549 -1.0222 2.3421 14 7 3.1115 -2.8519 1.6657 15 6 3.3551 -3.2758 3.0468 16 6 4.1087 -4.5808 3.0461 17 6 5.4923 -4.5771 3.0466 18 6 6.1884 -5.7680 3.0464 19 6 5.4936 -6.9792 3.0464 20 6 6.2096 -8.2193 3.0468 21 7 6.7772 -9.2032 3.0440 22 6 4.0972 -6.9755 3.0405 23 6 3.4137 -5.7773 3.0460 24 1 -0.3633 0.0913 1.0236 25 1 -0.3634 0.8408 -0.5908 26 1 -0.3635 -0.9321 -0.4327 27 1 -0.0536 3.0984 1.3729 28 1 3.1498 -1.1383 -0.5145 29 1 1.6083 -2.0281 -0.5148 30 1 3.4266 -3.3975 0.9282 31 1 2.4026 -3.4068 3.5601 32 1 3.9437 -2.5162 3.5614 33 1 6.0286 -3.6396 3.0478 34 1 7.2684 -5.7638 3.0464 35 1 3.5536 -7.9087 3.0356 36 1 2.3338 -5.7730 3.0453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263921673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:11 Heat of formation + Delta-G solvation = 48.538933 kcal Electronic energy + Delta-G solvation = -19419.834237 eV Core-core repulsion = 16291.236409 eV Total energy + Delta-G solvation = -3128.597827 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.02232 -38.66752 -36.85657 -35.25754 -34.33387 -31.77114 -31.47566 -31.13932 -27.89028 -26.08708 -25.63082 -23.14226 -22.58236 -21.41197 -19.72594 -19.27881 -16.93634 -16.65378 -16.04607 -15.70329 -15.20937 -14.81927 -14.56842 -14.50265 -14.30041 -13.90210 -13.47543 -13.28559 -13.22436 -12.97541 -12.87655 -12.50811 -12.22306 -11.71607 -11.62312 -11.42508 -11.12731 -10.83565 -10.64164 -10.35982 -10.00037 -9.86536 -9.41477 -9.40569 -8.92771 -8.57832 -8.45757 -6.77504 -5.67920 -3.12258 0.33682 0.96317 2.31888 2.55118 3.39703 3.44527 3.46800 3.48809 3.51817 3.57196 3.92176 4.45534 4.47068 4.49950 4.53529 4.96966 5.02723 5.32180 5.43686 5.46332 5.58429 5.67162 5.68011 5.83365 5.90266 6.02201 6.14859 6.25322 6.29938 6.42285 6.73061 6.90127 7.12701 7.38885 7.76363 7.86169 8.08082 8.39891 9.10273 9.24400 9.86484 10.32825 11.36644 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040458 B = 0.003053 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.902823 B = 9169.706807 C = 9437.890199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.572 5.572 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.895 5.895 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.133 3.867 12 C 0.469 3.531 13 O -0.507 6.507 14 N -0.747 5.747 15 C 0.152 3.848 16 C -0.065 4.065 17 C -0.104 4.104 18 C -0.070 4.070 19 C -0.033 4.033 20 C 0.257 3.743 21 N -0.422 5.422 22 C -0.071 4.071 23 C -0.104 4.104 24 H 0.035 0.965 25 H 0.047 0.953 26 H -0.002 1.002 27 H 0.252 0.748 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.393 0.607 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -16.637 1.925 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.291 5.291 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.538 5.538 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.000 4.000 12 C 0.253 3.747 13 O -0.378 6.378 14 N -0.405 5.405 15 C 0.028 3.972 16 C -0.066 4.066 17 C -0.122 4.122 18 C -0.091 4.091 19 C -0.037 4.037 20 C -0.058 4.058 21 N -0.097 5.097 22 C -0.091 4.091 23 C -0.123 4.123 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.226 0.774 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.692 -17.406 2.658 19.215 hybrid contribution 0.397 0.929 -0.152 1.022 sum 8.089 -16.476 2.506 18.525 Atomic orbital electron populations 1.20866 0.81915 0.95484 0.99985 1.43926 1.02151 0.99854 1.83218 1.19155 0.97239 0.84477 1.37966 0.91174 1.25033 0.97874 0.98496 0.97858 1.70120 1.18531 1.26728 1.38460 0.86260 0.78673 0.83944 0.77515 1.21379 1.21741 1.20562 1.21031 0.98017 0.90280 0.90677 1.23803 0.76433 0.78921 0.95560 1.90713 1.48522 1.52311 1.46277 1.46709 1.61487 1.25914 1.06342 1.20166 0.99190 0.91355 0.86445 1.20354 0.93968 0.95411 0.96871 1.21120 0.93583 0.98270 0.99244 1.21184 1.00272 0.90617 0.97022 1.16030 0.92427 0.86932 1.08298 1.25764 0.93483 0.92967 0.93622 1.81263 1.08526 1.10943 1.08998 1.21178 0.91823 0.99042 0.97086 1.21102 1.00757 0.91028 0.99382 0.94680 0.93427 0.98370 0.93745 0.90838 0.91451 0.77442 0.90969 0.90897 0.84512 0.84897 0.84910 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 9.02 59.84 0.54 4.59 16 2 N -0.57 -14.44 2.41 -182.51 -0.44 -14.88 16 3 C -0.26 -7.18 9.68 -15.06 -0.15 -7.32 16 4 H 0.07 1.87 7.86 -52.48 -0.41 1.46 16 5 C 0.01 0.20 5.06 -17.44 -0.09 0.11 16 6 N -0.90 -26.88 10.66 55.49 0.59 -26.29 16 7 Si 0.91 22.08 29.58 -169.99 -5.03 17.05 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.13 2.56 6.19 -5.20 -0.03 2.53 16 12 C 0.47 9.06 7.90 -10.99 -0.09 8.98 16 13 O -0.51 -12.81 16.43 5.56 0.09 -12.72 16 14 N -0.75 -9.96 5.55 -61.47 -0.34 -10.30 16 15 C 0.15 1.79 5.79 -5.19 -0.03 1.76 16 16 C -0.06 -0.55 5.25 -104.53 -0.55 -1.09 16 17 C -0.10 -0.77 9.68 -39.64 -0.38 -1.15 16 18 C -0.07 -0.48 9.76 -39.17 -0.38 -0.86 16 19 C -0.03 -0.25 5.73 -106.93 -0.61 -0.86 16 20 C 0.26 2.38 15.33 -22.48 -0.34 2.04 16 21 N -0.42 -4.93 18.54 41.83 0.78 -4.15 16 22 C -0.07 -0.47 9.76 -39.16 -0.38 -0.85 16 23 C -0.10 -0.75 9.68 -39.64 -0.38 -1.14 16 24 H 0.03 0.98 7.40 -51.93 -0.38 0.60 16 25 H 0.05 1.25 7.21 -51.93 -0.37 0.88 16 26 H 0.00 -0.05 7.83 -51.93 -0.41 -0.45 16 27 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 29 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 30 H 0.39 4.01 8.46 -40.82 -0.35 3.67 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -35.31 324.68 -6.75 -42.06 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.41 Total: -2.38 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.88 Total: 6.72 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.59 Total: -55.63 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.31 -6.75 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263921673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.600 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds