Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36935 * 120.00260 * 2 1 4 4 H 1.08004 * 119.99979 * 200.27517 * 3 2 1 5 5 C 1.38809 * 119.99549 * 20.28038 * 3 2 1 6 6 N 1.31611 * 120.00508 * 15.01591 * 5 3 2 7 7 Si 1.86810 * 119.99669 * 195.01613 * 5 3 2 8 8 H 1.48501 * 109.46988 * 85.00150 * 7 5 3 9 9 H 1.48502 * 109.46978 * 205.00000 * 7 5 3 10 10 H 1.48494 * 109.46940 * 324.99968 * 7 5 3 11 11 C 1.46499 * 119.99736 * 180.02562 * 2 1 3 12 12 C 1.50694 * 109.47468 * 270.00036 * 11 2 1 13 13 O 1.21277 * 119.99675 * 359.97438 * 12 11 2 14 14 N 1.34778 * 120.00278 * 180.02562 * 12 11 2 15 15 C 1.46503 * 119.99862 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.46594 * 179.97438 * 15 14 12 17 17 C 1.38366 * 119.84613 * 89.99977 * 16 15 14 18 18 C 1.37947 * 120.14983 * 179.97438 * 17 16 15 19 19 C 1.39632 * 119.84950 * 359.97438 * 18 17 16 20 20 C 1.43196 * 120.15349 * 180.02562 * 19 18 17 21 21 N 9.65402 * 145.25809 * 146.35539 * 11 1 2 22 22 C 1.39640 * 119.69452 * 0.27930 * 19 18 17 23 23 C 1.37948 * 119.84763 * 359.46398 * 22 19 18 24 24 H 1.09000 * 109.46949 * 275.09665 * 1 2 3 25 25 H 1.08999 * 109.47384 * 35.09481 * 1 2 3 26 26 H 1.08997 * 109.47837 * 155.09812 * 1 2 3 27 27 H 0.97008 * 120.00458 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47245 * 149.99339 * 11 2 1 29 29 H 1.09002 * 109.47044 * 30.00404 * 11 2 1 30 30 H 0.97002 * 119.99897 * 359.97438 * 14 12 11 31 31 H 1.08997 * 109.47319 * 59.99422 * 15 14 12 32 32 H 1.09000 * 109.46895 * 299.99439 * 15 14 12 33 33 H 1.07999 * 119.92487 * 0.02562 * 17 16 15 34 34 H 1.07999 * 120.07912 * 179.97438 * 18 17 16 35 35 H 1.07994 * 120.07424 * 179.69841 * 22 19 18 36 36 H 1.07998 * 119.92655 * 180.23143 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1795 1.2148 -0.3241 5 6 1.5201 2.3507 0.4167 6 7 0.3865 2.2843 1.0820 7 14 2.2820 4.0127 0.0331 8 1 1.8689 4.4447 -1.3263 9 1 1.8208 5.0108 1.0312 10 1 3.7619 3.9036 0.0895 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7045 1.4200 13 8 2.0549 -1.0222 2.3421 14 7 3.1115 -2.8519 1.6657 15 6 3.3551 -3.2758 3.0468 16 6 4.1087 -4.5808 3.0461 17 6 5.4923 -4.5771 3.0466 18 6 6.1884 -5.7680 3.0464 19 6 5.4936 -6.9792 3.0464 20 6 6.2096 -8.2193 3.0468 21 7 6.7772 -9.2032 3.0440 22 6 4.0972 -6.9755 3.0405 23 6 3.4137 -5.7773 3.0460 24 1 -0.3633 0.0913 1.0236 25 1 -0.3634 0.8408 -0.5908 26 1 -0.3635 -0.9321 -0.4327 27 1 -0.0536 3.0984 1.3729 28 1 3.1498 -1.1383 -0.5145 29 1 1.6083 -2.0281 -0.5148 30 1 3.4266 -3.3975 0.9282 31 1 2.4026 -3.4068 3.5601 32 1 3.9437 -2.5162 3.5614 33 1 6.0286 -3.6396 3.0478 34 1 7.2684 -5.7638 3.0464 35 1 3.5536 -7.9087 3.0356 36 1 2.3338 -5.7730 3.0453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263921673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = 24.859671 kcal Electronic energy + Delta-G solvation = -19420.861047 eV Core-core repulsion = 16291.236409 eV Total energy + Delta-G solvation = -3129.624637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82121 -40.03026 -37.69853 -37.01966 -35.62790 -33.30973 -32.54767 -32.03840 -29.32608 -27.88730 -27.08168 -23.79865 -23.70805 -22.86765 -21.21133 -19.90349 -18.78228 -18.07354 -17.14273 -16.79534 -16.56334 -15.94144 -15.90100 -15.45626 -15.26397 -15.06130 -14.82120 -14.60800 -14.42250 -14.07223 -13.86824 -13.66295 -13.42408 -13.20890 -12.98657 -12.76408 -12.48047 -12.37939 -12.17071 -11.99451 -11.98672 -11.83382 -10.88189 -10.50966 -9.96875 -9.86220 -9.84023 -8.77615 -7.77250 -5.24220 -0.30873 0.41762 1.48398 1.50398 1.58427 1.59510 1.83499 2.04641 2.49939 2.59550 2.83689 2.97914 3.39803 3.68908 3.76835 3.87456 3.99092 4.34295 4.34989 4.42933 4.66376 4.72150 4.76264 4.80580 4.84870 4.91385 5.09426 5.21633 5.33605 5.34545 5.60043 5.65387 5.67658 5.79285 5.83943 6.32506 6.42014 6.85904 7.17595 7.65894 7.91300 8.30530 9.26479 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040458 B = 0.003053 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.902823 B = 9169.706807 C = 9437.890199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.594 5.594 3 C -0.261 4.261 4 H 0.078 0.922 5 C -0.058 4.058 6 N -0.935 5.935 7 Si 0.970 3.030 8 H -0.279 1.279 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.126 3.874 12 C 0.473 3.527 13 O -0.575 6.575 14 N -0.720 5.720 15 C 0.156 3.844 16 C -0.068 4.068 17 C -0.103 4.103 18 C -0.063 4.063 19 C -0.036 4.036 20 C 0.280 3.720 21 N -0.467 5.467 22 C -0.062 4.062 23 C -0.101 4.101 24 H -0.007 1.007 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.244 0.756 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.413 0.587 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 -18.427 0.972 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.315 5.315 3 C -0.391 4.391 4 H 0.096 0.904 5 C -0.253 4.253 6 N -0.581 5.581 7 Si 0.799 3.201 8 H -0.206 1.206 9 H -0.228 1.228 10 H -0.193 1.193 11 C -0.005 4.005 12 C 0.258 3.742 13 O -0.452 6.452 14 N -0.376 5.376 15 C 0.032 3.968 16 C -0.070 4.070 17 C -0.121 4.121 18 C -0.084 4.084 19 C -0.039 4.039 20 C -0.034 4.034 21 N -0.143 5.143 22 C -0.083 4.083 23 C -0.119 4.119 24 H 0.011 0.989 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.250 0.750 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.311 -19.299 1.665 21.493 hybrid contribution -0.001 1.272 0.149 1.280 sum 9.310 -18.028 1.815 20.371 Atomic orbital electron populations 1.20565 0.82522 0.96429 0.97292 1.44076 1.02280 1.01295 1.83819 1.19558 0.97436 0.85782 1.36310 0.90396 1.25860 0.98729 1.02103 0.98613 1.70326 1.20331 1.26820 1.40663 0.85239 0.78309 0.79528 0.77064 1.20570 1.22829 1.19296 1.21284 0.99264 0.88951 0.90956 1.23381 0.76290 0.79757 0.94724 1.90710 1.51700 1.54869 1.47937 1.46194 1.59155 1.24126 1.08170 1.20127 0.99126 0.92801 0.84721 1.20057 0.94184 0.94040 0.98689 1.21176 0.93136 0.98885 0.98940 1.21325 1.01190 0.89908 0.95930 1.16118 0.92761 0.86332 1.08738 1.25933 0.92494 0.92694 0.92277 1.81295 1.09954 1.12339 1.10695 1.21342 0.91474 0.99611 0.95844 1.21183 1.01330 0.90604 0.98819 0.98891 0.95957 0.94223 0.94659 0.88496 0.87543 0.75029 0.91817 0.92216 0.83855 0.83180 0.83017 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.95 9.02 127.77 1.15 10.10 16 2 N -0.59 -29.71 2.41 -731.33 -1.77 -31.48 16 3 C -0.26 -14.43 9.68 84.03 0.81 -13.62 16 4 H 0.08 4.08 7.86 -2.91 -0.02 4.06 16 5 C -0.06 -3.36 5.06 84.86 0.43 -2.93 16 6 N -0.94 -58.32 10.66 21.65 0.23 -58.09 16 7 Si 0.97 46.11 29.58 68.60 2.03 48.13 16 8 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 9 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 C 0.13 4.56 6.19 85.63 0.53 5.08 16 12 C 0.47 17.70 7.90 87.65 0.69 18.40 16 13 O -0.58 -29.50 16.43 -3.02 -0.05 -29.55 16 14 N -0.72 -17.54 5.55 -466.79 -2.59 -20.13 16 15 C 0.16 3.43 5.79 85.63 0.50 3.93 16 16 C -0.07 -0.97 5.25 -19.80 -0.10 -1.08 16 17 C -0.10 -1.23 9.68 22.23 0.22 -1.02 16 18 C -0.06 -0.66 9.76 22.54 0.22 -0.44 16 19 C -0.04 -0.42 5.73 -21.36 -0.12 -0.55 16 20 C 0.28 4.58 15.33 88.33 1.35 5.94 16 21 N -0.47 -10.25 18.54 19.00 0.35 -9.90 16 22 C -0.06 -0.62 9.76 22.54 0.22 -0.40 16 23 C -0.10 -1.14 9.68 22.23 0.22 -0.93 16 24 H -0.01 -0.43 7.40 -2.39 -0.02 -0.45 16 25 H 0.02 1.19 7.21 -2.39 -0.02 1.17 16 26 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 27 H 0.24 14.83 8.31 -92.70 -0.77 14.06 16 28 H 0.10 3.05 8.03 -2.38 -0.02 3.03 16 29 H 0.11 3.00 7.86 -2.39 -0.02 2.98 16 30 H 0.41 6.94 8.46 -92.71 -0.78 6.15 16 31 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 33 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -80.01 324.68 4.64 -75.37 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.32 Total: 3.16 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 6.11 Total: 22.48 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -3.77 Total: -119.60 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.05 Total: -29.55 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -80.01 4.64 -75.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263921673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.230 kcal (2) G-P(sol) polarization free energy of solvation -80.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds