Wall clock time and date at job start Mon Mar 30 2020 01:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47586 * 2 1 4 4 C 1.50703 * 109.47035 * 239.99840 * 2 1 3 5 5 H 1.07999 * 120.00162 * 240.00065 * 4 2 1 6 6 C 1.37876 * 119.99532 * 60.00269 * 4 2 1 7 7 N 1.31512 * 120.00148 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99744 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47098 * 59.99884 * 8 6 4 10 10 H 1.48499 * 109.47095 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47202 * 300.00040 * 8 6 4 12 12 N 1.46500 * 109.47081 * 120.00021 * 2 1 3 13 13 C 1.46504 * 119.99854 * 59.99775 * 12 2 1 14 14 C 1.34772 * 120.00243 * 239.99493 * 12 2 1 15 15 O 1.21592 * 120.00063 * 3.35699 * 14 12 2 16 16 C 1.47595 * 120.00095 * 183.35295 * 14 12 2 17 17 C 1.36580 * 125.91832 * 173.48209 * 16 14 12 18 18 N 1.36193 * 107.09415 * 179.97438 * 17 16 14 19 19 C 1.36676 * 132.29589 * 179.97438 * 18 17 16 20 20 C 1.34843 * 120.64370 * 179.97438 * 19 18 17 21 21 C 1.40580 * 120.34053 * 0.04053 * 20 19 18 22 22 C 1.35895 * 119.73120 * 359.97438 * 21 20 19 23 23 C 1.37273 * 107.34239 * 359.97438 * 18 17 16 24 24 N 1.32236 * 108.37318 * 359.97438 * 23 18 17 25 25 H 1.09000 * 109.46942 * 300.00242 * 1 2 3 26 26 H 1.08999 * 109.47036 * 59.99847 * 1 2 3 27 27 H 1.08998 * 109.47586 * 180.02562 * 1 2 3 28 28 H 0.97006 * 119.99505 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47295 * 264.10340 * 13 12 2 30 30 H 1.08999 * 109.47226 * 24.10874 * 13 12 2 31 31 H 1.09001 * 109.47023 * 144.10438 * 13 12 2 32 32 H 1.07996 * 126.44981 * 359.95796 * 17 16 14 33 33 H 1.08003 * 119.67911 * 0.02562 * 19 18 17 34 34 H 1.07995 * 119.83513 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.13244 * 180.25330 * 21 20 19 36 36 H 1.08000 * 120.32896 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1190 -4.0078 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0368 1.1447 1.9227 16 6 3.3461 -0.7513 3.2498 17 6 4.2401 -0.2457 4.1500 18 7 4.4866 -1.2257 5.0631 19 6 5.2895 -1.2724 6.1682 20 6 5.3566 -2.3882 6.9222 21 6 4.6001 -3.5228 6.5806 22 6 3.7972 -3.4924 5.4846 23 6 3.7358 -2.3174 4.7043 24 7 3.0551 -2.0144 3.6118 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7096 1.1619 -3.4844 29 1 0.7973 -2.1451 2.0864 30 1 1.4274 -2.5701 0.4769 31 1 2.5050 -2.6080 1.8930 32 1 4.6707 0.7447 4.1396 33 1 5.8752 -0.4068 6.4406 34 1 5.9951 -2.4106 7.7930 35 1 4.6533 -4.4133 7.1892 36 1 3.2115 -4.3584 5.2135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264082413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:21 Heat of formation + Delta-G solvation = 50.049886 kcal Electronic energy + Delta-G solvation = -20512.513334 eV Core-core repulsion = 17383.981027 eV Total energy + Delta-G solvation = -3128.532308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.86638 -40.61478 -38.12760 -37.18475 -34.98790 -34.49488 -31.92894 -30.76653 -29.83971 -27.59835 -27.32701 -25.73953 -23.96761 -23.56061 -22.34363 -20.17867 -18.89166 -18.47615 -17.94946 -17.50937 -17.14048 -17.08677 -16.27595 -15.92818 -15.87281 -15.42511 -15.09721 -14.73870 -14.31656 -13.91825 -13.55152 -13.27708 -13.11316 -12.98753 -12.81860 -12.72734 -12.62267 -12.54870 -12.21760 -12.12366 -12.03265 -11.37615 -11.15590 -10.73687 -10.51899 -9.94168 -9.35982 -8.88791 -8.15328 -6.32327 -0.27202 0.24141 1.08520 1.41197 1.44169 1.48859 1.52349 2.25987 2.39688 2.47415 2.62490 3.06986 3.12002 3.48541 3.78707 3.94902 4.16825 4.23934 4.33088 4.61420 4.67641 4.74516 4.79029 4.81307 4.88690 5.04032 5.06239 5.16263 5.29227 5.41187 5.44892 5.59863 5.60003 5.65668 5.96026 6.06676 6.13697 6.59649 6.72746 6.78720 7.23804 7.41871 8.89484 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033056 B = 0.004241 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.837174 B = 6600.237604 C = 6808.929340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.260 3.740 3 H 0.015 0.985 4 C -0.543 4.543 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.093 3.907 14 C 0.573 3.427 15 O -0.595 6.595 16 C -0.013 4.013 17 C -0.023 4.023 18 N -0.366 5.366 19 C 0.036 3.964 20 C -0.127 4.127 21 C -0.076 4.076 22 C -0.105 4.105 23 C 0.210 3.790 24 N -0.492 5.492 25 H 0.017 0.983 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.267 0.733 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.207 0.793 33 H 0.195 0.805 34 H 0.197 0.803 35 H 0.184 0.816 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 -10.833 22.023 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.158 3.842 3 H 0.033 0.967 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.310 5.310 13 C -0.050 4.050 14 C 0.360 3.640 15 O -0.478 6.478 16 C -0.145 4.145 17 C -0.159 4.159 18 N -0.037 5.037 19 C -0.084 4.084 20 C -0.146 4.146 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.036 4.036 24 N -0.215 5.215 25 H 0.036 0.964 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.224 0.776 33 H 0.212 0.788 34 H 0.214 0.786 35 H 0.201 0.799 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.743 -10.563 21.312 25.342 hybrid contribution 0.432 0.708 -0.925 1.243 sum 9.175 -9.855 20.386 24.432 Atomic orbital electron populations 1.21862 0.96954 1.00008 1.00019 1.18676 0.91868 0.92384 0.81246 0.96717 1.21497 1.32297 1.13173 0.91130 0.92481 1.25748 0.94925 0.95639 1.01945 1.70015 1.37072 1.23724 1.24656 0.85454 0.78408 0.78926 0.77891 1.18811 1.20392 1.20218 1.48114 1.47412 1.13590 1.21844 1.21982 1.01849 0.80460 1.00703 1.17571 0.78873 0.85578 0.81934 1.90683 1.62975 1.16816 1.77308 1.20452 1.02557 0.92934 0.98565 1.22645 1.04765 0.96351 0.92127 1.42899 1.29818 1.11777 1.19239 1.22502 0.95950 1.03602 0.86309 1.21477 1.01093 0.90888 1.01178 1.21631 0.93021 1.00320 0.94982 1.20673 1.02527 0.94269 0.95045 1.21822 0.95050 0.91320 0.95414 1.70941 1.25701 1.12785 1.12047 0.96353 0.90767 0.93781 0.92427 0.93176 0.91915 0.88287 0.77607 0.78820 0.78638 0.79871 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.89 8.97 71.98 0.65 -6.24 16 2 C 0.26 14.90 2.63 44.25 0.12 15.02 16 3 H 0.01 0.98 6.90 -2.39 -0.02 0.97 16 4 C -0.54 -31.77 7.95 25.60 0.20 -31.57 16 5 H 0.06 3.29 7.43 -2.91 -0.02 3.27 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -54.72 11.32 21.45 0.24 -54.48 16 8 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 9 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 N -0.58 -29.44 2.75 -830.49 -2.29 -31.73 16 13 C 0.09 3.92 8.53 127.77 1.09 5.01 16 14 C 0.57 28.56 7.67 86.71 0.67 29.23 16 15 O -0.60 -33.31 16.21 -4.01 -0.06 -33.38 16 16 C -0.01 -0.54 6.64 40.81 0.27 -0.27 16 17 C -0.02 -0.72 11.47 83.63 0.96 0.24 16 18 N -0.37 -8.97 2.93 -351.25 -1.03 -10.00 16 19 C 0.04 0.48 10.93 83.16 0.91 1.39 16 20 C -0.13 -0.93 9.98 22.06 0.22 -0.71 16 21 C -0.08 -0.68 10.06 22.30 0.22 -0.46 16 22 C -0.11 -1.83 10.11 22.45 0.23 -1.60 16 23 C 0.21 5.77 7.79 134.20 1.05 6.82 16 24 N -0.49 -17.67 7.79 -183.49 -1.43 -19.10 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 4.22 6.07 -2.39 -0.01 4.21 16 27 H 0.04 2.16 7.67 -2.39 -0.02 2.14 16 28 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 2.70 7.12 -2.39 -0.02 2.68 16 31 H 0.10 3.99 5.31 -2.39 -0.01 3.98 16 32 H 0.21 5.63 8.06 -2.91 -0.02 5.61 16 33 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -80.50 305.29 5.58 -74.92 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.09 Total: 8.58 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 7.03 Total: 18.29 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.50 Total: -115.31 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.06 Total: -33.38 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -80.50 5.58 -74.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264082413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.972 kcal (2) G-P(sol) polarization free energy of solvation -80.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds