Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 C 1.50690 * 109.47403 * 239.99502 * 2 1 3 5 5 O 1.21396 * 120.00550 * 260.00103 * 4 2 1 6 6 C 1.41756 * 120.00175 * 79.99699 * 4 2 1 7 7 C 1.37839 * 126.93815 * 0.02602 * 6 4 2 8 8 N 1.35312 * 109.50930 * 179.97438 * 7 6 4 9 9 H 0.96993 * 124.62572 * 179.97438 * 8 7 6 10 10 C 1.37768 * 110.74530 * 0.02562 * 8 7 6 11 11 N 1.32707 * 132.74592 * 180.02562 * 10 8 7 12 12 C 1.31602 * 121.71863 * 179.97438 * 11 10 8 13 13 C 1.38565 * 121.53512 * 0.02562 * 12 11 10 14 14 C 1.38381 * 119.29720 * 359.97438 * 13 12 11 15 15 C 1.39290 * 118.05749 * 359.72225 * 14 13 12 16 16 N 1.46504 * 109.47225 * 119.99198 * 2 1 3 17 17 C 1.46500 * 119.99635 * 60.00158 * 16 2 1 18 18 C 1.36928 * 120.00593 * 240.00269 * 16 2 1 19 19 H 1.08008 * 119.99974 * 339.16073 * 18 16 2 20 20 C 1.38814 * 120.00291 * 158.88337 * 18 16 2 21 21 N 1.31617 * 119.99611 * 343.08570 * 20 18 16 22 22 Si 1.86801 * 119.99925 * 163.08665 * 20 18 16 23 23 H 1.48498 * 109.47194 * 89.99812 * 22 20 18 24 24 H 1.48501 * 109.46950 * 210.00078 * 22 20 18 25 25 H 1.48504 * 109.47082 * 329.99813 * 22 20 18 26 26 H 1.08998 * 109.46685 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47083 * 299.99999 * 1 2 3 28 28 H 1.08999 * 109.47029 * 60.00576 * 1 2 3 29 29 H 1.07996 * 125.24585 * 359.96081 * 7 6 4 30 30 H 1.07994 * 119.23260 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.35311 * 179.97438 * 13 12 11 32 32 H 1.07996 * 120.96692 * 180.02562 * 14 13 12 33 33 H 1.09002 * 109.47704 * 264.61776 * 17 16 2 34 34 H 1.09006 * 109.47266 * 24.61900 * 17 16 2 35 35 H 1.09000 * 109.47123 * 144.61351 * 17 16 2 36 36 H 0.96998 * 119.99645 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.4069 -1.8628 -1.1555 6 6 2.0677 -0.0332 -2.4751 7 6 1.6804 1.2663 -2.7224 8 7 1.8631 1.5507 -4.0326 9 1 1.6611 2.4054 -4.4444 10 6 2.3741 0.4604 -4.7021 11 7 2.7123 0.2589 -5.9694 12 6 3.1908 -0.8953 -6.3826 13 6 3.3652 -1.9605 -5.5137 14 6 3.0295 -1.8082 -4.1799 15 6 2.5312 -0.5750 -3.7663 16 7 2.0184 -0.6905 1.1963 17 6 1.6645 -2.0930 1.4282 18 6 2.8056 -0.0250 2.0976 19 1 3.3415 0.8625 1.7947 20 6 2.9104 -0.4876 3.4022 21 7 2.0247 -1.3410 3.8709 22 14 4.3084 0.1010 4.4924 23 1 3.8857 1.3228 5.2230 24 1 4.6572 -0.9632 5.4677 25 1 5.4937 0.4112 3.6532 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.2911 1.9518 -1.9843 30 1 3.4527 -1.0154 -7.4234 31 1 3.7591 -2.8995 -5.8735 32 1 3.1548 -2.6204 -3.4791 33 1 0.7918 -2.1448 2.0794 34 1 1.4363 -2.5724 0.4762 35 1 2.5019 -2.6056 1.9016 36 1 2.0977 -1.6640 4.7826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271216631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = 67.331221 kcal Electronic energy + Delta-G solvation = -20653.381446 eV Core-core repulsion = 17525.598513 eV Total energy + Delta-G solvation = -3127.782933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69057 -38.79484 -37.80381 -35.24153 -32.94648 -32.13412 -30.48285 -29.80290 -28.59022 -25.86722 -24.57959 -23.82711 -23.01367 -22.51556 -20.55964 -18.68472 -17.74466 -16.98418 -16.54727 -16.00349 -15.30373 -15.18019 -14.85086 -14.63627 -14.04901 -13.83043 -13.44826 -13.18424 -12.92980 -12.59213 -12.42430 -12.24331 -12.00698 -11.52336 -11.31984 -10.80178 -10.72415 -10.60901 -10.33910 -10.20227 -10.05644 -9.79214 -9.56798 -8.83648 -8.62503 -8.40614 -8.07350 -6.67973 -5.65641 -3.10732 0.80974 1.24194 1.89883 2.57431 3.40894 3.48349 3.50870 3.53561 3.93051 4.34562 4.49048 4.60123 4.69778 4.92305 5.01732 5.13061 5.34845 5.42746 5.46314 5.53281 5.82398 5.93849 6.08839 6.16464 6.21224 6.29415 6.30845 6.48062 6.70835 6.80697 6.90097 7.05988 7.11920 7.61538 7.81804 7.87366 7.91369 8.35723 8.50341 9.28502 9.92024 10.41035 11.37442 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.004541 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.238479 B = 6164.492797 C = 6268.026172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.083 0.917 4 C 0.400 3.600 5 O -0.454 6.454 6 C -0.240 4.240 7 C 0.134 3.866 8 N -0.565 5.565 9 H 0.422 0.578 10 C 0.268 3.732 11 N -0.498 5.498 12 C 0.129 3.871 13 C -0.198 4.198 14 C -0.021 4.021 15 C -0.109 4.109 16 N -0.581 5.581 17 C 0.162 3.838 18 C -0.260 4.260 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.195 0.805 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.035 0.965 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 4.431 -17.888 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.101 0.899 4 C 0.276 3.724 5 O -0.329 6.329 6 C -0.249 4.249 7 C 0.001 3.999 8 N -0.169 5.169 9 H 0.260 0.740 10 C 0.037 3.963 11 N -0.211 5.211 12 C -0.036 4.036 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.115 4.115 16 N -0.302 5.302 17 C 0.017 3.983 18 C -0.389 4.389 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.212 0.788 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.653 4.535 -18.237 18.865 hybrid contribution 0.749 0.159 1.039 1.291 sum -0.905 4.694 -17.198 17.850 Atomic orbital electron populations 1.22195 0.96293 1.01972 1.00814 1.20594 0.93522 0.96192 0.87134 0.89863 1.21774 0.74519 0.87812 0.88283 1.90432 1.36822 1.18299 1.87307 1.20470 1.13752 0.95333 0.95344 1.22840 0.96395 0.96637 0.84038 1.41321 1.54772 1.13096 1.07716 0.73975 1.18386 1.00210 0.87718 0.90008 1.66448 1.14996 1.25442 1.14258 1.22385 0.94665 0.86842 0.99746 1.21961 1.04979 1.00953 0.94042 1.21184 0.92120 0.95824 0.95580 1.19684 1.03431 0.94714 0.93676 1.43753 1.58074 1.08436 1.19961 1.20844 0.99072 0.82870 0.95465 1.19183 1.19740 1.10128 0.89860 0.91510 1.24912 0.98302 0.99796 0.96366 1.70122 1.33745 1.35263 1.15342 0.86323 0.82505 0.77728 0.80356 1.21493 1.21573 1.20603 0.92860 0.91501 0.93863 0.78828 0.82298 0.84432 0.83808 0.95867 0.95986 0.94642 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 2 C 0.14 2.71 2.58 -69.08 -0.18 2.54 16 3 H 0.08 1.50 7.29 -51.93 -0.38 1.13 16 4 C 0.40 7.75 6.13 -32.97 -0.20 7.55 16 5 O -0.45 -10.25 13.66 5.46 0.07 -10.18 16 6 C -0.24 -3.78 6.11 -104.93 -0.64 -4.42 16 7 C 0.13 1.51 10.97 -16.16 -0.18 1.34 16 8 N -0.56 -5.95 5.95 -11.67 -0.07 -6.02 16 9 H 0.42 2.95 8.96 -40.82 -0.37 2.58 16 10 C 0.27 3.70 8.40 -155.45 -1.31 2.40 16 11 N -0.50 -6.60 10.39 -12.29 -0.13 -6.73 16 12 C 0.13 1.42 11.14 -17.53 -0.20 1.23 16 13 C -0.20 -2.24 10.11 -39.41 -0.40 -2.64 16 14 C -0.02 -0.30 9.91 -39.14 -0.39 -0.69 16 15 C -0.11 -1.70 6.24 -104.90 -0.66 -2.35 16 16 N -0.58 -14.91 2.73 -174.81 -0.48 -15.39 16 17 C 0.16 4.27 7.54 59.85 0.45 4.73 16 18 C -0.26 -7.20 9.59 -15.06 -0.14 -7.35 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 20 C 0.00 0.14 5.02 -17.43 -0.09 0.05 16 21 N -0.90 -26.70 10.83 55.49 0.60 -26.10 16 22 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.05 0.99 7.67 -51.93 -0.40 0.59 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.57 7.90 -51.93 -0.41 0.16 16 29 H 0.19 1.49 7.63 -52.49 -0.40 1.09 16 30 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 2.17 7.47 -52.49 -0.39 1.78 16 33 H 0.02 0.65 7.36 -51.93 -0.38 0.26 16 34 H 0.02 0.54 5.82 -51.93 -0.30 0.24 16 35 H 0.03 1.01 7.34 -51.93 -0.38 0.63 16 36 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -35.20 305.21 -8.23 -43.44 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.22 Total: -0.73 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.58 Total: 0.07 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.07 Total: -54.24 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.20 -8.23 -43.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271216631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.769 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds