Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47051 * 2 1 4 4 C 1.50690 * 109.47403 * 239.99502 * 2 1 3 5 5 O 1.21396 * 120.00550 * 260.00103 * 4 2 1 6 6 C 1.41756 * 120.00175 * 79.99699 * 4 2 1 7 7 C 1.37839 * 126.93815 * 0.02602 * 6 4 2 8 8 N 1.35312 * 109.50930 * 179.97438 * 7 6 4 9 9 H 0.96993 * 124.62572 * 179.97438 * 8 7 6 10 10 C 1.37768 * 110.74530 * 0.02562 * 8 7 6 11 11 N 1.32707 * 132.74592 * 180.02562 * 10 8 7 12 12 C 1.31602 * 121.71863 * 179.97438 * 11 10 8 13 13 C 1.38565 * 121.53512 * 0.02562 * 12 11 10 14 14 C 1.38381 * 119.29720 * 359.97438 * 13 12 11 15 15 C 1.39290 * 118.05749 * 359.72225 * 14 13 12 16 16 N 1.46504 * 109.47225 * 119.99198 * 2 1 3 17 17 C 1.46500 * 119.99635 * 60.00158 * 16 2 1 18 18 C 1.36928 * 120.00593 * 240.00269 * 16 2 1 19 19 H 1.08008 * 119.99974 * 339.16073 * 18 16 2 20 20 C 1.38814 * 120.00291 * 158.88337 * 18 16 2 21 21 N 1.31617 * 119.99611 * 343.08570 * 20 18 16 22 22 Si 1.86801 * 119.99925 * 163.08665 * 20 18 16 23 23 H 1.48498 * 109.47194 * 89.99812 * 22 20 18 24 24 H 1.48501 * 109.46950 * 210.00078 * 22 20 18 25 25 H 1.48504 * 109.47082 * 329.99813 * 22 20 18 26 26 H 1.08998 * 109.46685 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47083 * 299.99999 * 1 2 3 28 28 H 1.08999 * 109.47029 * 60.00576 * 1 2 3 29 29 H 1.07996 * 125.24585 * 359.96081 * 7 6 4 30 30 H 1.07994 * 119.23260 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.35311 * 179.97438 * 13 12 11 32 32 H 1.07996 * 120.96692 * 180.02562 * 14 13 12 33 33 H 1.09002 * 109.47704 * 264.61776 * 17 16 2 34 34 H 1.09006 * 109.47266 * 24.61900 * 17 16 2 35 35 H 1.09000 * 109.47123 * 144.61351 * 17 16 2 36 36 H 0.96998 * 119.99645 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.4069 -1.8628 -1.1555 6 6 2.0677 -0.0332 -2.4751 7 6 1.6804 1.2663 -2.7224 8 7 1.8631 1.5507 -4.0326 9 1 1.6611 2.4054 -4.4444 10 6 2.3741 0.4604 -4.7021 11 7 2.7123 0.2589 -5.9694 12 6 3.1908 -0.8953 -6.3826 13 6 3.3652 -1.9605 -5.5137 14 6 3.0295 -1.8082 -4.1799 15 6 2.5312 -0.5750 -3.7663 16 7 2.0184 -0.6905 1.1963 17 6 1.6645 -2.0930 1.4282 18 6 2.8056 -0.0250 2.0976 19 1 3.3415 0.8625 1.7947 20 6 2.9104 -0.4876 3.4022 21 7 2.0247 -1.3410 3.8709 22 14 4.3084 0.1010 4.4924 23 1 3.8857 1.3228 5.2230 24 1 4.6572 -0.9632 5.4677 25 1 5.4937 0.4112 3.6532 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.2911 1.9518 -1.9843 30 1 3.4527 -1.0154 -7.4234 31 1 3.7591 -2.8995 -5.8735 32 1 3.1548 -2.6204 -3.4791 33 1 0.7918 -2.1448 2.0794 34 1 1.4363 -2.5724 0.4762 35 1 2.5019 -2.6056 1.9016 36 1 2.0977 -1.6640 4.7826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271216631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = 44.069725 kcal Electronic energy + Delta-G solvation = -20654.390140 eV Core-core repulsion = 17525.598513 eV Total energy + Delta-G solvation = -3128.791627 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.69001 -40.25297 -38.80802 -37.09962 -34.11636 -33.82812 -31.84415 -31.02435 -29.95956 -27.97158 -26.06191 -24.83061 -24.66887 -23.46317 -22.14401 -19.76123 -19.07754 -18.75744 -17.73642 -17.05694 -16.81167 -16.47411 -16.27394 -15.75913 -15.74175 -15.32432 -14.93333 -14.50818 -14.30041 -14.11570 -13.83604 -13.34621 -13.17246 -13.08188 -12.96007 -12.73389 -12.59587 -12.39779 -12.06252 -12.00284 -11.82054 -11.38340 -10.77630 -10.60228 -10.18739 -9.57136 -9.12353 -8.72754 -7.78048 -5.25735 -0.21265 0.26648 0.76907 1.46323 1.50009 1.58559 1.68783 2.29458 2.52373 2.90424 3.26515 3.41470 3.54064 3.69704 3.72708 3.96978 4.04721 4.16439 4.38051 4.47648 4.52875 4.56406 4.88182 4.89396 4.92218 5.02560 5.13987 5.24526 5.33025 5.39906 5.42841 5.52226 5.65534 5.70348 5.83370 6.26050 6.32542 6.93485 7.01777 7.16210 7.88560 8.34477 9.24129 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.004541 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.238479 B = 6164.492797 C = 6268.026172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.126 3.874 3 H 0.108 0.892 4 C 0.407 3.593 5 O -0.507 6.507 6 C -0.296 4.296 7 C 0.185 3.815 8 N -0.543 5.543 9 H 0.443 0.557 10 C 0.253 3.747 11 N -0.505 5.505 12 C 0.128 3.872 13 C -0.182 4.182 14 C -0.056 4.056 15 C -0.134 4.134 16 N -0.600 5.600 17 C 0.187 3.813 18 C -0.266 4.266 19 H 0.079 0.921 20 C -0.054 4.054 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.274 1.274 26 H 0.031 0.969 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.240 0.760 30 H 0.201 0.799 31 H 0.168 0.832 32 H 0.122 0.878 33 H 0.000 1.000 34 H 0.031 0.969 35 H -0.002 1.002 36 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 7.188 -20.449 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.126 0.874 4 C 0.287 3.713 5 O -0.387 6.387 6 C -0.305 4.305 7 C 0.049 3.951 8 N -0.149 5.149 9 H 0.285 0.715 10 C 0.022 3.978 11 N -0.218 5.218 12 C -0.037 4.037 13 C -0.203 4.203 14 C -0.082 4.082 15 C -0.140 4.140 16 N -0.322 5.322 17 C 0.042 3.958 18 C -0.396 4.396 19 H 0.096 0.904 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.203 1.203 24 H -0.225 1.225 25 H -0.199 1.199 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.256 0.744 30 H 0.218 0.782 31 H 0.186 0.814 32 H 0.140 0.860 33 H 0.019 0.981 34 H 0.050 0.950 35 H 0.017 0.983 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.561 7.361 -20.877 22.192 hybrid contribution 0.715 -0.648 1.623 1.889 sum -0.846 6.713 -19.254 20.408 Atomic orbital electron populations 1.22051 0.94032 1.01248 1.02737 1.20997 0.95179 0.96876 0.85187 0.87402 1.21670 0.73120 0.87137 0.89338 1.90412 1.39901 1.20348 1.88021 1.20091 1.18693 0.97562 0.94146 1.23406 0.91938 0.95100 0.84641 1.41351 1.52972 1.13253 1.07276 0.71478 1.18554 1.00977 0.88199 0.90059 1.66582 1.15152 1.26356 1.13752 1.23110 0.93234 0.85891 1.01422 1.22317 1.02977 1.02394 0.92589 1.21261 0.94414 0.95624 0.96930 1.19942 1.04088 0.95710 0.94271 1.43937 1.58646 1.08139 1.21482 1.20422 0.96455 0.84044 0.94867 1.19621 1.19746 1.10046 0.90199 0.90372 1.25727 1.00592 1.00576 0.97987 1.70284 1.35548 1.37084 1.15376 0.85288 0.79692 0.77156 0.78383 1.20334 1.22451 1.19898 0.94993 0.92505 0.88793 0.74432 0.78222 0.81427 0.86005 0.98141 0.95014 0.98305 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.18 71.98 0.66 -4.03 16 2 C 0.13 4.91 2.58 44.24 0.11 5.03 16 3 H 0.11 3.61 7.29 -2.39 -0.02 3.59 16 4 C 0.41 15.82 6.13 26.55 0.16 15.99 16 5 O -0.51 -24.09 13.66 -3.39 -0.05 -24.14 16 6 C -0.30 -8.95 6.11 -20.06 -0.12 -9.07 16 7 C 0.19 3.44 10.97 84.06 0.92 4.37 16 8 N -0.54 -9.29 5.95 -190.84 -1.14 -10.43 16 9 H 0.44 4.06 8.96 -92.71 -0.83 3.23 16 10 C 0.25 6.36 8.40 133.71 1.12 7.48 16 11 N -0.51 -11.90 10.39 -192.79 -2.00 -13.91 16 12 C 0.13 2.44 11.14 84.81 0.95 3.38 16 13 C -0.18 -3.81 10.11 22.38 0.23 -3.58 16 14 C -0.06 -1.64 9.91 22.56 0.22 -1.41 16 15 C -0.13 -4.10 6.24 -20.05 -0.13 -4.22 16 16 N -0.60 -31.39 2.73 -706.98 -1.93 -33.31 16 17 C 0.19 10.43 7.54 127.77 0.96 11.39 16 18 C -0.27 -14.86 9.59 84.04 0.81 -14.06 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.05 -3.09 5.02 84.86 0.43 -2.67 16 21 N -0.94 -57.50 10.83 21.65 0.23 -57.27 16 22 Si 0.97 46.00 29.59 68.60 2.03 48.03 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 26 H 0.03 1.18 7.67 -2.39 -0.02 1.16 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.09 2.13 7.90 -2.39 -0.02 2.11 16 29 H 0.24 2.17 7.63 -2.91 -0.02 2.15 16 30 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.12 4.00 7.47 -2.91 -0.02 3.98 16 33 H 0.00 0.02 7.36 -2.39 -0.02 0.01 16 34 H 0.03 1.67 5.82 -2.38 -0.01 1.66 16 35 H 0.00 -0.12 7.34 -2.39 -0.02 -0.14 16 36 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -81.65 305.21 3.76 -77.89 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.28 Total: 4.54 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 6.32 Total: 8.60 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -4.83 Total: -114.91 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -81.65 3.76 -77.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271216631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.955 kcal (2) G-P(sol) polarization free energy of solvation -81.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds