Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.50700 * 109.47433 * 239.99767 * 2 1 3 5 5 H 1.07995 * 120.00109 * 240.00043 * 4 2 1 6 6 C 1.37873 * 119.99681 * 60.00380 * 4 2 1 7 7 N 1.31521 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99840 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47130 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47127 * 119.99459 * 8 6 4 11 11 H 1.48498 * 109.47285 * 239.99667 * 8 6 4 12 12 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 13 13 C 1.34773 * 119.99969 * 274.72265 * 12 2 1 14 14 O 1.21281 * 120.00220 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 2 16 16 C 1.50690 * 109.47185 * 180.02562 * 15 13 12 17 17 C 1.38973 * 119.68533 * 90.00090 * 16 15 13 18 18 C 1.36591 * 120.80873 * 179.97438 * 17 16 15 19 19 C 1.39280 * 119.85732 * 0.02812 * 18 17 16 20 20 N 1.37032 * 133.84726 * 180.02562 * 19 18 17 21 21 H 0.97008 * 125.45947 * 359.93614 * 20 19 18 22 22 N 1.39870 * 109.08046 * 179.97438 * 20 19 18 23 23 C 1.30246 * 110.08348 * 359.97438 * 22 20 19 24 24 C 1.40817 * 119.41888 * 359.97438 * 19 18 17 25 25 C 1.36469 * 119.68557 * 269.72628 * 16 15 13 26 26 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 28 28 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 29 29 H 0.96994 * 119.99652 * 180.02562 * 7 6 4 30 30 H 0.97005 * 119.99811 * 95.00317 * 12 2 1 31 31 H 1.09004 * 109.46762 * 300.00389 * 15 13 12 32 32 H 1.08998 * 109.46924 * 59.99727 * 15 13 12 33 33 H 1.07993 * 119.59209 * 359.97438 * 17 16 15 34 34 H 1.08006 * 120.06619 * 180.02562 * 18 17 16 35 35 H 1.07995 * 126.10204 * 179.97438 * 23 22 20 36 36 H 1.07996 * 120.17673 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0182 -0.6906 1.1963 13 6 2.1522 -0.0169 2.3558 14 8 1.8681 1.1610 2.4091 15 6 2.6550 -0.7271 3.5862 16 6 2.7114 0.2427 4.7382 17 6 1.6029 0.3981 5.5619 18 6 1.6290 1.2703 6.6128 19 6 2.7776 2.0161 6.8666 20 7 3.1146 2.9479 7.8132 21 1 2.5358 3.2606 8.5261 22 7 4.4266 3.3764 7.5862 23 6 4.9249 2.7625 6.5512 24 6 3.9018 1.8600 6.0331 25 6 3.8524 0.9558 4.9661 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7083 1.1608 -3.4844 30 1 2.2489 -1.6318 1.1527 31 1 1.9800 -1.5464 3.8341 32 1 3.6523 -1.1232 3.3951 33 1 0.7100 -0.1777 5.3687 34 1 0.7608 1.3813 7.2456 35 1 5.9176 2.8979 6.1481 36 1 4.7109 0.8263 4.3238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279649219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = 39.294990 kcal Electronic energy + Delta-G solvation = -19856.017703 eV Core-core repulsion = 16727.019028 eV Total energy + Delta-G solvation = -3128.998675 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24956 -39.03299 -37.20445 -34.72429 -32.70932 -32.34847 -31.34304 -29.89169 -28.97437 -26.58480 -25.23492 -23.07662 -22.08652 -21.65360 -20.58234 -19.32908 -17.91657 -17.10310 -16.48346 -15.72640 -15.42572 -15.04503 -14.79859 -14.63867 -14.22457 -14.03716 -13.61896 -13.40616 -13.00138 -12.39182 -12.03485 -11.80775 -11.64305 -11.51460 -11.14122 -11.03732 -10.94045 -10.83471 -10.67799 -10.30290 -10.28361 -10.23151 -9.03194 -9.00567 -8.62755 -8.54060 -7.89313 -7.86738 -6.11510 -4.20775 0.96906 1.51695 2.46670 2.64519 3.23869 3.31682 3.34193 3.46132 3.72929 4.24619 4.45746 4.54492 4.59334 4.80961 4.86077 5.18728 5.20866 5.37343 5.44459 5.62406 5.67573 5.76757 5.87467 6.00637 6.29894 6.41783 6.68963 6.83160 6.86702 6.98327 7.17493 7.22445 7.49654 7.50309 7.59051 7.71526 7.93803 8.16867 8.70846 8.80662 9.18730 9.47358 10.94442 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037272 B = 0.003427 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.044077 B = 8168.878043 C = 8348.656036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.712 5.712 13 C 0.500 3.500 14 O -0.547 6.547 15 C -0.102 4.102 16 C -0.091 4.091 17 C -0.049 4.049 18 C -0.145 4.145 19 C 0.125 3.875 20 N -0.515 5.515 21 H 0.437 0.563 22 N -0.259 5.259 23 C 0.078 3.922 24 C -0.179 4.179 25 C -0.027 4.027 26 H 0.026 0.974 27 H 0.014 0.986 28 H 0.089 0.911 29 H 0.263 0.737 30 H 0.388 0.612 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.196 0.804 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 -2.751 17.465 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.360 5.360 13 C 0.284 3.716 14 O -0.426 6.426 15 C -0.142 4.142 16 C -0.093 4.093 17 C -0.069 4.069 18 C -0.167 4.167 19 C 0.010 3.990 20 N -0.231 5.231 21 H 0.281 0.719 22 N -0.072 5.072 23 C -0.120 4.120 24 C -0.186 4.186 25 C -0.047 4.047 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.220 0.780 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.213 0.787 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.941 -0.897 18.261 18.703 hybrid contribution -0.165 -1.246 -1.217 1.750 sum 3.776 -2.144 17.044 17.588 Atomic orbital electron populations 1.22069 0.98581 0.99024 1.00841 1.18720 0.90955 0.93995 0.80117 0.93446 1.21271 1.32314 1.13167 0.90366 0.92022 1.24901 0.94847 0.94961 0.99087 1.69918 1.35940 1.22520 1.23733 0.86402 0.78593 0.79529 0.82613 1.19725 1.20908 1.20894 1.46533 1.65343 1.13468 1.10658 1.20363 0.78985 0.87663 0.84564 1.90682 1.50900 1.15966 1.85036 1.20694 1.03679 0.97716 0.92131 1.18848 0.93931 0.99827 0.96711 1.20594 0.97545 0.96188 0.92600 1.19707 0.95904 0.99772 1.01366 1.18806 0.96062 0.92816 0.91341 1.45875 1.11618 1.37052 1.28518 0.71925 1.76509 0.92231 1.20422 1.18067 1.25086 0.99588 0.94117 0.93168 1.19840 0.94302 1.03852 1.00655 1.20167 0.97967 0.92552 0.94046 0.95521 0.96706 0.89245 0.92658 0.77970 0.88576 0.88489 0.85404 0.85832 0.78723 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.67 2.56 -69.08 -0.18 6.49 16 3 H 0.05 1.40 7.57 -51.93 -0.39 1.00 16 4 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.71 -14.33 5.07 -54.93 -0.28 -14.61 16 13 C 0.50 9.53 7.79 -10.98 -0.09 9.45 16 14 O -0.55 -12.95 15.69 5.56 0.09 -12.86 16 15 C -0.10 -1.34 5.81 -29.04 -0.17 -1.51 16 16 C -0.09 -1.25 4.34 -104.99 -0.46 -1.71 16 17 C -0.05 -0.62 9.61 -39.90 -0.38 -1.00 16 18 C -0.15 -1.75 10.03 -39.79 -0.40 -2.15 16 19 C 0.13 1.63 7.34 -84.18 -0.62 1.01 16 20 N -0.52 -6.00 7.37 32.36 0.24 -5.76 16 21 H 0.44 3.67 8.96 -182.76 -1.64 2.03 16 22 N -0.26 -3.28 12.55 31.87 0.40 -2.88 16 23 C 0.08 0.92 12.28 -15.15 -0.19 0.74 16 24 C -0.18 -2.41 6.37 -105.21 -0.67 -3.08 16 25 C -0.03 -0.36 9.68 -39.58 -0.38 -0.74 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 6.61 8.54 -40.82 -0.35 6.26 16 31 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.10 1.05 8.07 -51.93 -0.42 0.63 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 313.80 15.07 4.73 4.73 Total: -1.00 -33.48 313.80 -8.41 -41.88 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.61 Total: 6.76 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -3.58 Total: -8.46 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.99 Total: -47.53 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.48 -8.41 -41.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279649219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.179 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds