Wall clock time and date at job start Mon Mar 30 2020 01:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.50700 * 109.47433 * 239.99767 * 2 1 3 5 5 H 1.07995 * 120.00109 * 240.00043 * 4 2 1 6 6 C 1.37873 * 119.99681 * 60.00380 * 4 2 1 7 7 N 1.31521 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99840 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47130 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47127 * 119.99459 * 8 6 4 11 11 H 1.48498 * 109.47285 * 239.99667 * 8 6 4 12 12 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 13 13 C 1.34773 * 119.99969 * 274.72265 * 12 2 1 14 14 O 1.21281 * 120.00220 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 2 16 16 C 1.50690 * 109.47185 * 180.02562 * 15 13 12 17 17 C 1.38973 * 119.68533 * 90.00090 * 16 15 13 18 18 C 1.36591 * 120.80873 * 179.97438 * 17 16 15 19 19 C 1.39280 * 119.85732 * 0.02812 * 18 17 16 20 20 N 1.37032 * 133.84726 * 180.02562 * 19 18 17 21 21 H 0.97008 * 125.45947 * 359.93614 * 20 19 18 22 22 N 1.39870 * 109.08046 * 179.97438 * 20 19 18 23 23 C 1.30246 * 110.08348 * 359.97438 * 22 20 19 24 24 C 1.40817 * 119.41888 * 359.97438 * 19 18 17 25 25 C 1.36469 * 119.68557 * 269.72628 * 16 15 13 26 26 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 28 28 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 29 29 H 0.96994 * 119.99652 * 180.02562 * 7 6 4 30 30 H 0.97005 * 119.99811 * 95.00317 * 12 2 1 31 31 H 1.09004 * 109.46762 * 300.00389 * 15 13 12 32 32 H 1.08998 * 109.46924 * 59.99727 * 15 13 12 33 33 H 1.07993 * 119.59209 * 359.97438 * 17 16 15 34 34 H 1.08006 * 120.06619 * 180.02562 * 18 17 16 35 35 H 1.07995 * 126.10204 * 179.97438 * 23 22 20 36 36 H 1.07996 * 120.17673 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0182 -0.6906 1.1963 13 6 2.1522 -0.0169 2.3558 14 8 1.8681 1.1610 2.4091 15 6 2.6550 -0.7271 3.5862 16 6 2.7114 0.2427 4.7382 17 6 1.6029 0.3981 5.5619 18 6 1.6290 1.2703 6.6128 19 6 2.7776 2.0161 6.8666 20 7 3.1146 2.9479 7.8132 21 1 2.5358 3.2606 8.5261 22 7 4.4266 3.3764 7.5862 23 6 4.9249 2.7625 6.5512 24 6 3.9018 1.8600 6.0331 25 6 3.8524 0.9558 4.9661 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7083 1.1608 -3.4844 30 1 2.2489 -1.6318 1.1527 31 1 1.9800 -1.5464 3.8341 32 1 3.6523 -1.1232 3.3951 33 1 0.7100 -0.1777 5.3687 34 1 0.7608 1.3813 7.2456 35 1 5.9176 2.8979 6.1481 36 1 4.7109 0.8263 4.3238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279649219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:57 Heat of formation + Delta-G solvation = 16.275976 kcal Electronic energy + Delta-G solvation = -19857.015882 eV Core-core repulsion = 16727.019028 eV Total energy + Delta-G solvation = -3129.996854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.17894 -40.52627 -38.29421 -36.57529 -34.26525 -33.65391 -32.47653 -30.85239 -30.69123 -27.76307 -27.28406 -24.04870 -23.41827 -22.73503 -21.93959 -20.96170 -18.92478 -18.75506 -17.51526 -17.35104 -17.07570 -16.40077 -15.87775 -15.73650 -15.53816 -15.38629 -14.69912 -14.65517 -14.35094 -14.26845 -13.71394 -13.07090 -13.02337 -12.82472 -12.66139 -12.61493 -12.57025 -12.23947 -12.09475 -12.01205 -11.76422 -11.24711 -11.05014 -10.67032 -10.51806 -9.65146 -9.59486 -8.85606 -8.14727 -6.32103 0.03029 0.52293 1.46197 1.47403 1.55196 1.59340 1.79934 1.97303 2.38977 2.63246 3.04355 3.16091 3.61218 3.74531 3.86226 3.91366 4.26618 4.32528 4.45156 4.54271 4.73198 4.79990 4.86792 4.91255 4.96767 5.09358 5.15073 5.36240 5.48942 5.49653 5.66987 5.71186 5.75705 5.92635 5.97820 6.15006 6.38409 6.61760 6.77782 7.09413 7.36770 7.70175 8.91588 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037272 B = 0.003427 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.044077 B = 8168.878043 C = 8348.656036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.257 1.257 10 H -0.280 1.280 11 H -0.285 1.285 12 N -0.708 5.708 13 C 0.497 3.503 14 O -0.599 6.599 15 C -0.085 4.085 16 C -0.111 4.111 17 C -0.060 4.060 18 C -0.148 4.148 19 C 0.112 3.888 20 N -0.512 5.512 21 H 0.448 0.552 22 N -0.278 5.278 23 C 0.079 3.921 24 C -0.203 4.203 25 C -0.037 4.037 26 H 0.041 0.959 27 H 0.011 0.989 28 H 0.063 0.937 29 H 0.264 0.736 30 H 0.406 0.594 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.227 0.773 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 -4.687 18.042 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.181 1.181 10 H -0.206 1.206 11 H -0.212 1.212 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.480 6.480 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.081 4.081 18 C -0.170 4.170 19 C -0.004 4.004 20 N -0.228 5.228 21 H 0.294 0.706 22 N -0.092 5.092 23 C -0.118 4.118 24 C -0.211 4.211 25 C -0.058 4.058 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.242 0.758 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.243 0.757 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.701 -2.871 18.882 19.669 hybrid contribution -0.404 -0.578 -1.330 1.505 sum 4.297 -3.449 17.552 18.397 Atomic orbital electron populations 1.21887 0.98515 0.99431 0.99364 1.18284 0.90980 0.91827 0.82300 0.98757 1.21620 1.32293 1.13463 0.90804 0.90628 1.25826 0.94958 0.95601 1.02436 1.70075 1.37214 1.24122 1.24425 0.85297 0.78045 0.78563 0.78415 1.18103 1.20591 1.21160 1.46281 1.65465 1.14248 1.09757 1.21399 0.77439 0.87158 0.85548 1.90662 1.52901 1.18546 1.85897 1.20660 1.05709 0.97638 0.88459 1.19041 0.94458 1.00541 0.97231 1.20895 0.97931 0.96577 0.92671 1.20022 0.96440 0.99060 1.01470 1.19094 0.96483 0.93162 0.91655 1.45919 1.11574 1.36700 1.28642 0.70556 1.76476 0.92803 1.21134 1.18750 1.25641 1.00560 0.93094 0.92530 1.20174 0.95209 1.04557 1.01153 1.20401 0.98572 0.92522 0.94275 0.93947 0.97003 0.91861 0.92689 0.75828 0.85233 0.85572 0.83782 0.83323 0.75684 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 2 C 0.27 13.83 2.56 44.24 0.11 13.94 16 3 H -0.01 -0.34 7.57 -2.39 -0.02 -0.36 16 4 C -0.54 -28.34 8.73 25.60 0.22 -28.12 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -52.89 11.32 21.45 0.24 -52.64 16 8 Si 0.97 41.59 29.54 68.60 2.03 43.61 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 12 N -0.71 -27.84 5.07 -446.09 -2.26 -30.10 16 13 C 0.50 18.51 7.79 87.66 0.68 19.19 16 14 O -0.60 -28.75 15.69 -3.03 -0.05 -28.80 16 15 C -0.09 -2.01 5.81 29.10 0.17 -1.85 16 16 C -0.11 -2.86 4.34 -20.10 -0.09 -2.95 16 17 C -0.06 -1.44 9.61 22.06 0.21 -1.23 16 18 C -0.15 -3.35 10.03 22.14 0.22 -3.12 16 19 C 0.11 2.81 7.34 39.21 0.29 3.10 16 20 N -0.51 -11.44 7.37 -51.54 -0.38 -11.82 16 21 H 0.45 7.13 8.96 -213.46 -1.91 5.21 16 22 N -0.28 -6.80 12.55 -53.09 -0.67 -7.47 16 23 C 0.08 1.78 12.28 86.92 1.07 2.84 16 24 C -0.20 -5.30 6.37 -20.24 -0.13 -5.43 16 25 C -0.04 -0.96 9.68 22.27 0.22 -0.75 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.41 12.92 8.54 -92.70 -0.79 12.13 16 31 H 0.13 2.23 8.08 -2.39 -0.02 2.21 16 32 H 0.13 2.28 8.07 -2.39 -0.02 2.26 16 33 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.23 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -74.10 313.80 1.43 -72.67 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -1.58 Total: 23.90 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.09 Total: -9.36 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -3.06 Total: -102.03 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -74.10 1.43 -72.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279649219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.950 kcal (2) G-P(sol) polarization free energy of solvation -74.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds